NONHSAT067993
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT067993 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4141 nt |
Genomic location |
chr19-:55622744..55626884 |
Exon number |
1 |
Exons |
55622744..55626884 |
Genome context |
|
Sequence |
000001 GTTCTCAGTG GCCACCCTGC GCTACCCTCT CCCAGAACCT GAGCTGCTCT GACGCGGCCG TCTGGTGCGT TTCACTGATC 000080
000081 CTGGTGCTGC AGCTTCCTTA CACTTCCCAA GAGGAGAAgc agtttggaaa aacaaaatca gaataagttg gtcctgagtt 000160 000161 ctaactttgg ctcttcacct ttctagtccc caatttatat tgttcctccg tgcgtcagtt ttacctgtga gataaggcca 000240 000241 gtagccagcc ccgtcctggc agggctgtgg tgaggaGGGG GGTGTCCGTG TGGAAAACTC CCTTTGTGAG AATGGTGCGT 000320 000321 CCTAGGTGTT CACCAGGTCG TGGCCGCCTC TACTCCCTTT CTCTTTCTCC ATCCTTCTTT CCTTAAAGAG TCCCCAGTGC 000400 000401 TATCTGGGAC ATATTCCTCC GCCCAGAGCA GGGTCCCGCT TCCCTAAGGC CCTGCTCTGG GCTTCTGGGT TTGAGTCCTT 000480 000481 GGCAAGCCCA GGAGAGGCGC TCAGGCTTCC CTGTCCCCCT TCCTCGTCCA CCATCTCATG CCCCTGGCTC TCCTGCCCCT 000560 000561 TCCCTACAGG GGTTCCTGGC TCTGCTCTTC AGACTGAGCC CCGTTCCCCT GCATCCCCGT TCCCCTGCAT CCCCCTTCCC 000640 000641 CTGCATCCCC CAGAGGCCCC AGGCCACCTA CTTGGCCTGG ACCCCACGAG AGGCCACCCC AGCCCTGTCT ACCAGGCTGC 000720 000721 CTTTTGGGTG GATTCTCCTC CAACTGTGGG GTGACTGCTT GGCAAACTCA CTCTTCGGGG TATCCCAGGA GGCCTGGAGC 000800 000801 ATTGGGGTGG GCTGGGGTTC AGAGAGGAGG GATTCCCTTC TCAGGTTACG TGGCCAAGAA GCAGGGGAGC TGGGTTTGGG 000880 000881 TCAGGTCTGG GTGtggggtg accagcttat gctgtttgcc caggacagcc tagttttagc actgaaaccc tcagtcctag 000960 000961 gaaaacaggg atggttggtc acTGTCTCTG GGTGACTCTT GATTCCCGGC CAGTTTCTCC ACCTGGGGCT GTGTTTCTCG 001040 001041 TCCTGCATCC TTCTCCAGGC AGGTCCCCAA GCATCGCCCC CCTGCTGTGG CTGTTCCCAA GTTCTTAGGG TACCCCACGT 001120 001121 GGGTTTATCA ACCACTTGGT GAGGCTGGTA CCCTGCCCCC ATTCCTGCAC CCCAATTGCC TTAGTGGCTA GGGGGTTGgg 001200 001201 ggctagagta ggaggggctg gagccaggat tcttagggct gaacagagaa gagctggggg cctgggctcc tgggtttgag 001280 001281 agaggagggg ctggggcctg gactcctggg tccgagggag gaggggctgg ggcctggact cctgggtctg agggtggagg 001360 001361 gactgggggc ctggactcct gggtccgagg gaggaggggc tggggcctgg actcgtgggt ctgagggagg aggggctggg 001440 001441 ggcctggact tctgggtctt agggaggcgg ggctgggcct ggacccctgg gtctgaatgg ggagaggctg ggggcctgga 001520 001521 ctccttcatc tgagggcgga agggctgggg cctggcctcc tgggttgaat ggggaggggt tgggcctgga ctctggagtc 001600 001601 CCTGGTGCCC AGGCCTCAGG CATCTTTCAC AGGGATGCCT GTACTGGGCA GGTCCTTGAA AGGGAAAGGC CCATTGCTCT 001680 001681 CCTTGCCCCC CTCCCCTATC GCCATGACAA CTGGGTGGAA ATAAACGAGC CGAGTTCATC CCGTTCCCAG GGCACGTGCG 001760 001761 GCCCCTTCAC AGCCCGAGTT TCCATGACCT CATGCTCTTG GCCCTCGTAG CTCCCTCCCG CCTCCTCCAG ATGGGCAGCT 001840 001841 TTGGAGAGGT GAGGGACTTG GGGGGTAATT TATCCCGTGG ATCTAGGAGT TTAGCTTCAC TCCTTCCTCA GCTCCAGTTC 001920 001921 AGGTCCCGGA GCCCACCCAG TGTCCACAAG GCCTGGGGCA AGTCCCTCCT CCGACCCCCT GGACTTCGGC TTTTGTCCCC 002000 002001 CCAAGTTTTG GACCCCTAAG GGAAGAATGA GAAACGGTGG CCCGTGTCAG CCCCTGGCTG CAGGGCCCCG TGCAGAGGGG 002080 002081 GCCTCAGTGA ACTGGAGTGT GACAGCCTGG GGCCCAGGCA CACAGGTGTG CAGCTGTCTC ACCCCTCTGG GAGTCCCGCC 002160 002161 CAGGCCCCTG AGTCTGTCCC AGCACAGGGT GGCCTTCCTC CACCCTGCAT AGCCCTGGGC CCACGGCTTC GTTCCTGCAG 002240 002241 AGTATCTGCT GGGGTGGTTT CCGAGCTTGA CCCTTGGAAG GACCTGGctg ggtttaaggc aggaggggct gggggccagg 002320 002321 actcctggct ctgaaggagg aggggctggA ACCTCTTCCC TAGTCTGAGC ACTGGAAGCG CCACCTGTGG GTGGTGACGG 002400 002401 GGGTTTTGCC GTGTCTAACA GGTACCATGT GGGGTTCCCG CACCCAGATG AGAAGCCCCC TCCCTTCCCC GTTCACTTCC 002480 002481 TGTTTGCAGA TAGCCAGGAG TCCTTTCGTG GTTTCCACTG AGCACTGAAG GCCTGGCCGG CCTGACCACT GGGCAACCAG 002560 002561 GCGTATCTTA AACAGCCAGT GGCCAGAGGC TGTTGGGTCA TTTTCCCCAC TGTCCTAGCA CCGTGTCCCT GGATCTGTTT 002640 002641 TCGTGGCTCC CTCTGGAGTC CCGACTTGCT GGGACACCGT GGCTGGGGTA GGTGCGGCTG ACGGCTGTTT CCCACCCCCA 002720 002721 GGCCTGCATT GATGAGAACC TGGAGGTGGT GCGCTTCTTG GTGGAGCAGG GCGCCACTGT GAACCAGGCA GACAACGAGG 002800 002801 GCTGGACGCC ACTGCACGTG GCCGCCTCCT GTGGCTACCT AGATATCGCC AGGTGAGGCA AGGGAGGGCC GGGCAGGACC 002880 002881 TGGTCGGGGT GGGGGCCTGG ACCCTCAGCC CTGACCAGCC CCCACCCCCA GGTACCTCCT GAGCCACGGG GCCAACATCG 002960 002961 CCGCCGTCAA CAGTGACGGG GACCTGCCCC TGGACCTGGC CGAGTCGGAC GCCATGGAGG GGCTGCTGAA GGCGGAGATC 003040 003041 GCCCGCCGAG GTGGGCTCTG GTGTGCTGTG TGTGGGGTGG GGGACACCTC CTCACCCGTG GTCTCCAGGC TGAGAGCTTT 003120 003121 AGAGGCGGCC TGGGCACCGA GGCTGACCCT GCTTCCTAGG ATTGTCTTtc tttgtgcctc agtttcctca cctgtgaaat 003200 003201 gggggtgtag gggcctgcct ccaggattgc ttggagCCCA GCACACGCAC AGGATGAGAA CTCAAACCCC TACCAACTGG 003280 003281 GACTGTCAAT CCCCCTGAGT AACTGAGGGG ATTGGAATGC CGGGGCGGGG TGGGTGGGTG GAGGGACTCA CCCAGGAGTG 003360 003361 CGTTAGGTAG GATTGCTGGA ACCCTGCCGC AGGTCTTTCT GGGAGGGGAT GCGTTTACTT GGGGGGGAGT AGGGGCATGC 003440 003441 AGGGGTTGCC AGGGACTGGT CTCCCTGTCC TCTGAGACTC ATCGTACCCC AGGAGCCTTC ATATGGGGTC CAGGAGCCCC 003520 003521 TGAAACTGTG TCTGGCCAGG TTCATTTTTC TAGGGAAGGG GTGTTGCTTC TAGCAGGTGT GTGATGGCCA CACAGGATCC 003600 003601 CTGGGTCCCC AGCATGTCTT CTAAagtcct gggcttgcct cccagctctg cctgtgactg gtgactccag gcacgtccct 003680 003681 gaagcttgct tccctgattt cctaaaacag gaccactggt gccgcttcat ggggtggttg tcagggtctg gctgggttgg 003760 003761 agtggaaggg tgtgagcatg gttcccggca gacTCCAGGG GACCGTGTGG AAGGAAAGGG AGACTGACGA GGAAATGAGA 003840 003841 TACCGGCAGC CTCCGAGACT TCTGACGCGG CTGTCCTGAC GGGGCCGCTG GCCAGGCTGA AAGGATAGGA TTCCGCGTGG 003920 003921 GTTCAGGGGT CCACGAGAGC CATGCGGGAG GACTAGCTAG TGGGACACGT GACGGCGGAG ATCTGAGGTT CGGGAGCCCC 004000 004001 TCTTTGGTTG AAATGGGGAG TGGGTCAAAT CAGCCCTGGA CCTGGATTCT GTCTCCTTCC TCCTCCAACt ttttattttg 004080 004081 ggaaagcttc agatttacag aaaagttgaa gcaatagcat gtgactaccc atatgacttt c |
Predicted Small Protein
Name | NONHSAT067993_smProtein_1568:1723 |
Length | 52 |
Molecular weight | 5463.4481 |
Aromaticity | 0.078431372549 |
Instability index | 51.1117647059 |
Isoelectric point | 11.7339477539 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0408685996921 |
Amino acid sequence | MGRGWAWTLESLVPRPQASFTGMPVLGRSLKGKGPLLSLPPSPIAMTTGWK |
Secondary structure | LLLLHHHHHHHLLLLLLLLLLLLLLLLEELLLLLLEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |