NONHSAT066605
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT066605 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3752 nt |
Genomic location |
chr19-:44090088..44093839 |
Exon number |
1 |
Exons |
44090088..44093839 |
Genome context |
|
Sequence |
000001 cttttgaccc gttgcctgtc ctgttctctg ttgtttcccc agcatctaga acaataggtg cctgacacaa taggtgcttc 000080
000081 gtaaatattt attattatta ttattatttt agagacaggg tcttgctctg ttgccccggc tggaatacag tgggatgatc 000160 000161 atggctcact gccatctcca actcctgggc tcaaacgatc ctcccacctc cgcctacaga gtagctggga ctataggtac 000240 000241 acagcaccaa attttctgta gagacggggg tcttgctttg tagcccacac tagtgttgaa ctcctggcct caagtgatcc 000320 000321 tcctgccttg atgggattac aggtgtgagc caccacaccc agccTAAATG TTTATTTCAT TGGTCAGTGT CAGAACTAGG 000400 000401 ATTGGAATTT AGATTGTTAA TCTCTTGCCA CAAGATAGGA AAATGGAGCA AGATGAGGAG AAAAAAGCAT TTAATGGgag 000480 000481 agaacaccct tgtctgaggt cagggacctg ggaagcaagc acgactttgc cactgtcact gtgtgttact tggacagtgc 000560 000561 cttattttcc catctgtgaa ataaaagagc tggataagaa ccttagtttt gagatcctgt cTCCCTTAAA AGCTGAAGAC 000640 000641 AAAGGTAACT GATCCAAGGG CAGACAAGGG ATGGTACCAT CATCTCCAGC TTGGACTCCC ACTGCTGACA AAATTTGTCC 000720 000721 cttcaaagtt gagatagcta ccatggggaa gagcacttag ttctatactg aatggctcca gGCATTTTCA TGAAAGCTCT 000800 000801 TTCAGCTTTG GGGAAGAATA TTCATCCATA TCTTTACCCC ATCATATTAG TGTCTAAGCC CTGCAATCAG GCATGTCAGC 000880 000881 CACGTGATGG AATGGGAGGG CTGCAGGGca gcactgtcca gtagaaacga aatgcaagcc acatatgtca ttttaaGttt 000960 000961 tctttttttg agatggagtt tcactccatc acccaggctg gagtgcagtg gcacgatctc gcctcactgc aacctccgcc 001040 001041 tcccaggttc atgtgattct cctgcctcag cctcctgagt agctgggatt acaggcatat gccaccatgc ctggctaatt 001120 001121 tttgtatttt tagtagagat ggggtttcac catgttgatc aggctggtct ggaactactg acctcaggcc acccgccttg 001200 001201 gcctcccaaa gtgctgggat tacaggcatg agccaccgcg cccagcTAAT TTTTGTATtt ttattttatt tatttattta 001280 001281 ttttttggga gacggagtct tgctctgtca cccaggctgg agtgcagttg tgcgatcttg gctcactgca acctcagcct 001360 001361 cccaagtagc tgggattaca ggcatgcacc atcatgccca gctaattttt gtatttttag tagagatggg gtttcactgt 001440 001441 gttggccagg ctggtcttga actcctgacc tcaggtgatc caccggcctc agcctcccaa agtgctggga ttataggcgt 001520 001521 gagccactgc acccgtccta atttttgtat ttttagtaga gatggggttt caccatgttg gctaagctgg tctggaactc 001600 001601 atggcctcaa gttatctgcc cacctcagcc tcccaaagtg ctgagTAAGC Caagttttct aatagccaca ttagacaagt 001680 001681 aaaaggaaac aggttaaatt cattttaaca tgttttactt aacccaatgt atccaaaata gcatttcaac atgtcatcgg 001760 001761 ttttttagtt tttttttttt ttgagatagt gcttcgcttt gttgcccagg ctggagtgca gtggcacaat ctcggctcac 001840 001841 tgcaacctcc accttccagg ttcaagtgat tctcctgcct cagcctcccg agtagctggg attacaggca cccgccacca 001920 001921 tgcccactaa tttttgtatt tttggttaga gatggggttt cgccatgttg gccaggctag tctcaaactc ctgacctcag 002000 002001 gtgatccacc cacctcggcc tcccaaagtg ctaggattac aggcgtgagg caccgtgcct ggcgtcatcg gtattattta 002080 002081 aatgaattat gttacgttct tttgtgctgt cttcaaaatc tgttatatat tttacactta caccaaatct caattaccat 002160 002161 ggtacatttt tatctgaaat gcttgacctt tattttgatt tcataaaatt catagttgga gaagtagatt cacatatcca 002240 002241 agttgttcca attatataat agttttccaa aaactgagat gggtgtccat ttttttttTA AGTAAAGATG CAGGTCTGGT 002320 002321 TATGTTGACC AAGTTGCTGG Gttgttttgt tttgttttga gacagagtct cactttgtca cccaggctgg agtgcagtgg 002400 002401 catgacctca gctcactgca acctctgcct cccaggttca actgattctc ttgcatcatc ctcctgagta gctgggacta 002480 002481 caggtgtatg ccaccatgcc tggctaattt tggtattttt ctcagagacg gggtttcacc atgttgggca tgctggtctt 002560 002561 gaactgctga cctcaggtga tccgcccacc tcggcctccc aaagtgctgg tattacaggc atgggccacc acacctggcc 002640 002641 TCAGCTGTtc aattaaaagt aaatacaact taaaattcta tgtttcattg gcagtagtgc aacattaata ctgagtagcc 002720 002721 acatgtgatt agtggctatg gtattggaca gggaaggtac agaatacttc catcaacata gaaaattcta tCAGTCTAGC 002800 002801 TCTAGGGGCA GATAGTCCTT CCACTGACTT GGGCAAGTCA CTCTACAaat ggcatctacc tcacatggtt atggtgagaa 002880 002881 ttcagcgtat gtatgtacat gcaggcacac aatatgcaca cagACACATA ACATAGTACA CCCTTTCCTG AAAAGCCTGA 002960 002961 CACATGGAGC TCAAACATGA GTGCCACCCA CCCCTGGGCA GCACCAAGAT GGCTCTAGTC TGGGTGCCTT TGTCTCACCC 003040 003041 CCATGCCTTT GCTCGGAGTG TGCTCCTCAT TTTTCTGCCA CTTTGACCCT GTCTCTGATT TGGTCCTGTC TGACATCACT 003120 003121 GCTATATGCT TTGCTCCTCT CAATTTCCTC TGCCCTCATG CCAGCAGGAG TCATGCCAGA GATCATATCT GAGAAAGCAA 003200 003201 GACAATTTTG TGTGTGTGTC TGTGCCCATA GAGGAGTGCT GGTTGTGTTG ATATAGTTGT AGATTGGTTG TGTTTACACA 003280 003281 GTTGTATATA TTGACACCCT TGAGTGTTAT GACTTCTTTT GGGGGTGGTC GCCTTTTAAA TCATAACTTT TAATGGGATT 003360 003361 CCATTTTAGT CTTTGTGAAG ACATAAGGTT GTTGGCAGGC ATCTGTCCCT GGGAGCATCC AAGCAGAAAA GACTAAGACT 003440 003441 CCCTTGTAGA CAGATCACTG GCCGCCACTG AAGTGTGTCT GCATGGCACC ACAGGGCTGG AAGACCCTTG AAGGCAGGAA 003520 003521 TTCAAGGAAA TGTATGATGA ATTTTGGCAT TGCCATCAAA AGCAGAACAG GCATGGAAAA CTTGGGTGAG TGGGCGAGAC 003600 003601 AACCTCCTCA CCACAGCAGA GTTCCATCCA TGCCTGGATA ATGATGGAGG GATTTGTGTC CACTGCAGTG GGGAACCATG 003680 003681 AAGGACACAT CAAGGGTGTG GTTGGCCTGT GGTGCTCTTT GGAGGAATGA ATAAAAATGA ATAGAAATCC TA |
Predicted Small Protein
Name | NONHSAT066605_smProtein_3482:3640 |
Length | 53 |
Molecular weight | 5865.7599 |
Aromaticity | 0.0576923076923 |
Instability index | 53.1115384615 |
Isoelectric point | 10.8866577148 |
Runs | 10 |
Runs residual | 0.041938287701 |
Runs probability | 0.014273096626 |
Amino acid sequence | MAPQGWKTLEGRNSRKCMMNFGIAIKSRTGMENLGEWARQPPHHSRVPSMPG |
Secondary structure | LLLLLLLLLLLLLLHHHEELEEEEEELLLLHHHHLHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |