NONHSAT063958
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT063958 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3167 nt |
Genomic location |
chr19+:24286988..24290154 |
Exon number |
1 |
Exons |
24286988..24290154 |
Genome context |
|
Sequence |
000001 CCTGGGGACA AAAAGAAGAG AAACTTATAT TTTTCTCTCT GTGGAGCAGC TCATTGTTCC TGAATCTTTT TTGTTGTAAA 000080
000081 GGACAGAAAT GGGTAGAGTT TTTGTGTCTT GAGCCTTCTG ACTTTGAGTG TGGTGGTAAC AGGTGAACAT GTGCTCAAAT 000160 000161 TTTTAAAGGC ATATTGTCAA GATGCAGGTG TAATTAGTCC AGAATATCTC ATCTGAGAAA GAATTCTAGA GGAGGAGGAG 000240 000241 AGAGAAAAAG TGACTTTTTT TTTCAGCTAA ACGTGTCCCA GATCAAGAGC TGTGTCTACT CTGCTTTCTG GAATGCCTTG 000320 000321 CATTTAGTAC TTGCAAATCT TCACTTCTAT ACCTGTGTTT TTTCTCCCTA ATAAGTTTTT CTTAACTACT TTTAAAAATG 000400 000401 CTTATGATAG TCGAGGGTGT CTGAAAAATT TTTCTATATA CAAGAATCTT CTCTACATCA TGGCTTTTTA TATGCCATGT 000480 000481 AAGATTCTCA CCATGAATTT GTGATCTGCA ATATTAAAAA TGTTCTCCTT GTGGCTGATG AACATGGAGA GGGGTGGATA 000560 000561 CTCAATATTT CTGTGGGGAA AACCTGGGGT TCTTAGTAAA GACATAGAAT ATGTAATGTT GAGGTTCTAT CTGTGTTCTT 000640 000641 TATTATCTGT ATGCATTACA CAATTAAGAA AATACTCATT TAAACAGGAT GGCATTTATT ACCCAGAAAG CTCTGAAAAA 000720 000721 ATTATCAAGA GATACCTCCT TATTAGGGTG CTATAGAAAG ACTACTTAAA ATCACTATTA CAAATTACAG AACATGAAAG 000800 000801 ATATCTGTAT CTTGAACTTC CCATAAAAct gatgttttct tatgattaaa ttcagactgt aatttagtgg gtacaatatc 000880 000881 tcagtagtaa tgtcgtgtcc ttctgggtgc atcagcacac tataaaaacc tgtcctagtg cagttgatgt tgatgctaat 000960 000961 aactcaataa gctctcttac agattttttc actatagaat tatttttctc ttcatcatta gatatcttta tggagCTGAT 001040 001041 GTGCATAAAC CATCACGTTT AATCTGGCTG CCttttgttt tttgtctttt tctttttttt aggttttctt tacatttatt 001120 001121 tttctttGGT AAATGAAAGC TCTCATCTTT GTTTACAGGC TAGAAAAACT AAAAAAAAAA ACAAAAAACA AAAACAACAG 001200 001201 GCTCTTCCAC TTACTGGATG TTTGACAAAA TAGTCTTTTG gggccaaaac attggcatta ctggtgagct tggtagagat 001280 001281 tcattaactc agactttatt tcagatctcc ccaaaaaata atctgcatta acaagatgtc cagtttattg tacacgttaa 001360 001361 aatttgagtg gtacCTTCTA ACTCAAGATG TCTATTTTGT CTGAAAAATA TAAACAACTA TGTCTTTTTC ATCTGAAAAA 001440 001441 TATACATAAC TCATTCTGCA TTATGTAAAC GTAGCACTCA AAAATGTATG TTAGTGTTTA TGCCTTCAAT TTTACATGTT 001520 001521 ATCTTCCAGA CAAGTATCAC ATATACACTG ATGTGGATAT TTTGCCACTC TATTTTCTCA GAGTTAGAGA ATACATTAGA 001600 001601 AAATGTTCAT GTGTTGACAA TTATTTTATT GGATAATTTC AATCACTCTT ATAAGTCAGA ACCAGTTCTA TTTACTCTAA 001680 001681 TTTTACCTTG AGTCAAATGA AAAATTCTGC CGATAGCCAC TTTGTAAATA TGTGTGTTTG TGTGTGTTTT CCAGGGACTG 001760 001761 TTGACATTTA GGGATGTGGC CATAGAATTC TCTCTGGAGG AGTGGCAACA CCTGGACATT GCACAGCAGA ATTTATATAG 001840 001841 AAATGTGATG TTAGAGAACT ACAGAAACCT GGCCTTCCTG GGTGAGGATA ACTTTAATAC AAAATTCCTC ACATAAACTA 001920 001921 AAGCTTTTAT TTTTCTTTAG AATGTTTTCT GGTAATTTAC GCATTCAGAT TTCTGTTTTC AAGAAAATAC TGGGGATTTG 002000 002001 TCTGTTGAGA AAGGAATTTC TTCAAGATGT TTCATCTTGA CCTGAACTTT CCACATTCCT GAGCTAATCT GTGTCCTGCA 002080 002081 CTTTAGATTA AGGCTAATTT CAGAAGTTTA GTGGCATAAA ATATTGTTAC ATCTTAAAAT CCATTTGGCA TCACCAATTT 002160 002161 TTGATTCAGT AGTACCAGGC AGTGAAATTA AGAACCtaaa aaattaaaat atttcctaaa tatttaaaaa tttCTGTTAT 002240 002241 AAATTAGTGT ATTAGAATAA CTTTGTTAGC ATATTCTATT ATATCCTCCT TACTGAGCAC ATTACTAAGT TGGTAATTGG 002320 002321 AGAATATAAG CAAGATTCAT TTAGTTATTT TTAATAAAAC AGGTATTGCT GTCTCTAAGC CAGACCTGAT CACCTGTCTG 002400 002401 GAACAAGGGA AAGAGCCCTG GAATATGAAG CGACATGAGA TGGTGGATGA ACCCCCAGGT AGGTGAGAGT GAATACAACA 002480 002481 GATGACATGG ATGAGAGGTC CAAAGTCAAG AAGAAAGCCA CTCTTTAAAG TGATTTAAGA AGCTGTGATC CAAAGGAAAT 002560 002561 AGTTTCTGGG AAGCCtaaat ttttttttta aattataCTC TCACATAGGG GCATCTTCTG CTTATGCCTA TAAAATCTAA 002640 002641 GAATTCTACT TTCCCTTCAA TGATCTTCCT CCAAGTTTAC AGTGACAGCC GAAGTACTGT TCATGGCATA CAAAAGAGTG 002720 002721 TACAATCTGA CTTCTTTTTT CTTGTTTTGT GGACAGACAG ATCTGTCTCC ATAATTTTGA GATACTGTAT GTTAAACTGT 002800 002801 TTTTTAAGTT CTCTTTTTGC ATCATGTCTG AAATGTGTGA GAGTAGTAGT ttctgttata ttgggttttt tctttttggt 002880 002881 ttatttttct gcacatttca tcctgttttc attactgtag tcttgaaata tagtttgaaa gtacaaagta ggatgtcctt 002960 002961 ctgctttgtt ctttttcctc aagattgctt tgactattca aagtttattg tagtttcatg tccattttag gattggattt 003040 003041 ttcattactg tgaagaaaaa cactggaatt ttgataagga gttctttaaa tctacaggtc actttggata atatggcagt 003120 003121 ttcataatac ttattctttc aatagaaata aaacatttta aaattta |
Predicted Small Protein
Name | NONHSAT063958_smProtein_1487:1690 |
Length | 68 |
Molecular weight | 7869.24 |
Aromaticity | 0.134328358209 |
Instability index | 42.3686567164 |
Isoelectric point | 5.24224853516 |
Runs | 10 |
Runs residual | 0.0059388919278 |
Runs probability | 0.0385974209504 |
Amino acid sequence | MLVFMPSILHVIFQTSITYTLMWIFCHSIFSELENTLENVHVLTIILLDNFNHSYKSEPV LFTLILP |
Secondary structure | LEEEELLLEEELLLLHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEELLLLLLLLLLLE EEEEELL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL LLLLLLL |
PiMo | iiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiii iiiiiii |