NONHSAT063908

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT063908

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3007 nt

Genomic location

chr19-:23582038..23590900

Exon number

8

Exons

23582038..23583849,23584979..23585314,23586008..23586295,23586522..23586549,23587753..23587910,23588060..23588137,23588802..23588907,23590700..23590900

Genome context

Sequence
000001 TCTCCAGCCT GGCTCTTTCA CAGGGGGCAT TGTGTCATAT TGCTGGGCCC CACACATAGG TTATGTGAGT CTCCTGCCTG 000080
000081 TGCCCTACCC ATGTAGGCCA TTGTGACATA TTGCTGGGTC CAACACCCAG GTGATGTAAC TCTACTGCCT CGGTCCTGCC 000160
000161 TACAGCGGAC ATTGTGATAT AACCCTGCAC CCATCACACA GGAGGAGACT GTAACGTATC CCTAATTGAG CACCCAGGTG 000240
000241 GTGTGACACT TCTGCCCTGT CCCTGCCCTC AGAGGAGATT CTGACATATC ACTGCCCCAA AATGCAGCAC CTGAGTAATT 000320
000321 TGACTCTCCT GCCTGGACCC AGCGTACAGA TGGGATTGTG CTTCATTGCT GGACCCAGCA TTTAGGCCCA CTACCTATGA 000400
000401 GATTGCATGC TCCTGCCTGG GCTGTGCCCA CAGTGACCTT GTGACATATA TCTGCATCCA TGACCTAAAA GATGTGACAC 000480
000481 TTCTTGCCTG CAACCTGCCC TGCACAGGAA AGATTGCGAC TTCTCCCTGG AAGCAGACAC CAGGGATCGT CACTCCCGTG 000560
000561 GATGATCAAA GCTACTCCGG GGGCTGAGGC AGGAGAATCG CTTGAACTCG GGAAGCAGAA GTTGCAGTGA GCCAAGGTCG 000640
000641 CACCACTGCA CTCCAGCCCA GGCGACATTG TGAGACTCCA TCTCAAAAAA AAAAAAAAGA AAAAAAGTGT ACTAACAAGA 000720
000721 CCCAGCACAC AGAGGAGACT TTTACCATTG TATGAACACC CATCAAACAG TACACATCAT CATTGTGAGT TCTGAATCTC 000800
000801 ACACATAGAG GAAGTCAAAG GTGGAAAACT TGACTCTCAT ATTTGGATCC AGTCCACAGG TTCTGCTAGC AAGGAAGACT 000880
000881 GAGACATATT GTGGGGCTCT ACGCCAATGT GACATTACTG TTCTGCCTTG GCCTGTACCT GAAAAGGCAT TGTGACATAT 000960
000961 TGCTGGGCCC AGCAACAAGG TGGCATGAGT CTTCCGTATG GACCCTGACA ACAGAGCATT GTGACATATC TTTAAGAGCA 001040
001041 TCAACTATTT GATGTGACTC TCCTTTTCTA CCAAGGCTTT CCTCATATGA GAGATTGTGA CACATCTTCT GGCACAGAAA 001120
001121 TCAAGTGATG TGTTTCTCCT GCCTGAGCTT TGCTCATAGA AAGCATTGTG ACATATCTCT GGTCTCAGCA CCCAGGTGTG 001200
001201 ATTTTGACGC ACACTTCTGC CCAGCACCTG AGTAATGTGA TTCTTCAGAA TTGGCCCGGC CCACAAATAG GATTGTGCCA 001280
001281 CACTGCTGGA CCCAGTGCCT AAGTGATGTA ACTCTATTCT TCTGCCTTGG TGCTACTCGA AAAAGACATT GTAACATATC 001360
001361 TCAGAGCCTT ACACCCAGGT AATGTGAGTC TCCTCTTCTG CCTTGCTGCT GCACACAGAA GCGGAATATG TACAGGATTG 001440
001441 TTAATCTCAT CTTGGATCTT CCTGCACTTG TGATTGTGAC ACATGCCTCT GTGTAGAACC TGAGTGAGTT TACTCTCCTG 001520
001521 CCTGGATTTA ACCCATAGAT GGAATCGTGA CATATCACTG TACCAGAAAC TAGGTGATGT GACTCTATTT TCTTGCCTCT 001600
001601 GTGTTTTTAT ATGGGGCATC GTGACATATC ACTGGGCCTT GCACCCAAGT GATGGGAGTT TTCTCTCCTG CTTTGGTGCC 001680
001681 GTCCACAATG AAAATTGTGA AATATTGCTG CCCTCCCCAC TAGGTTATGT TACTCTCCTG CCTCTGCTTT GCCCACATGG 001760
001761 GTCACTGTGA CATATTGCTG GGTCTAAAAC CCAGGTAATG TCACTCTCTT GTTTGGGTTC TGCCTGCAGG AGTCATTGTC 001840
001841 ACATATCTCT ATGCTCATCA CCCAGGTAAT ATGATTCCCT TTTACTGCTT AGTTCCTTCT CACAAAACAA CTTGTGACAT 001920
001921 ATTGCTAGGC CCAATACACC TAGCTGGTGT AACTCTTCTT TTCTTTTCTT TCCTTTTTTT TTTTTTTTTT TTGAGATGGA 002000
002001 GTCTCACTCT GTTGCCCAGG CTGGAGTGCA GCGGCATGAT TTCAGCTCAC TACAGCCTCT GCCTCCTAGG TTGAAGCGAT 002080
002081 TGTCCTGACT TGGCCTCCCA AGTAGCTGGG ATTAAAGGCA TGTGCCACCA CGCCCGGCTA ATTTTTGTAT TTATAGTAGA 002160
002161 GACAGGGTTT CGCCATGTTG GCTAGGCTGG TTTCGAACTT CTAACCTCAG GTGATCCTCC TGCCTCGGCC TCCCAAAGTA 002240
002241 CTGGAATTAC AGGCATGAGC CACTGCACCT GGCCTGATTC TTCTCTTCTT TCTAGGTTTC AACTGCAGCA GAGATTGTAA 002320
002321 CAAACCACTG GGCCCAGCCG CATAATGATG TTACTCTTTT GCCTTGGGCC TGCCCTCAGA AGGCACTGTC ACATATTCAT 002400
002401 GGGCCCAACG CCAAGGTGAT ATGTGTCTCC AGCCTGGACC CTGCCCACAG GGGGCATTGT GACATATCTC TTGGCCCATC 002480
002481 AGATGTTTGA TTGTTATCCC CTCCCCTCTT CTACCCTGTG TTTGCCTATA AAAGACACAG TCATATGTTC CTGGGCCCAG 002560
002561 CACCTAGGTG TTGTCTTACT GGAATGTGTC CACATGGGGA TTGTGATATG TCACGTGGCC CAGTACTTAA CTTGATGTGA 002640
002641 CTCTCCTCTC ATGCCTAGGC CTTGTAGAGA ATCCCCTTCC CCTTTTGTTT TCCTTTTTTT CTTTGCAGAT CCAGGAGATA 002720
002721 ATCAACTAAG AGCCAGGCAC CCGTTTAGGT CTAATAAACA TTTTACAAAC TGCTCTCTCT TTTAATTCAC CTATCTGAGA 002800
002801 GATTCCTCTG TACAATAAAA CTTGGTCTCC ACAATCCTTT ACCTTAACCT AAACCTTCCC TTTCATTGAT CCCAGGTCTT 002880
002881 CAGATTCCAC CACTTGTCAA CCACAAAATA TTTAAATTTA CCTGGAAGCC GCCCGCTTTG AGTTGTCCCG CCTTTCTGAA 002960
002961 CCAAACCAAT ATATTCCTGC AAAACCGGCC ATGATTAAAA CATCAAA
[back to top]

Predicted Small Protein

Name NONHSAT063908_smProtein_1127:1234
Length 36
Molecular weight 3942.529
Aromaticity 0.114285714286
Instability index 53.9171428571
Isoelectric point 6.22711181641
Runs 5
Runs residual 0.0382566585956
Runs probability 0.048436671966
Amino acid sequence MCFSCLSFAHRKHCDISLVSAPRCDFDAHFCPAPE
Secondary structure LLLLLLLHHHLLLLLLEEELLLLLLLLLLLLLLLL
PRMN -
PiMo -