NONHSAT063906
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT063906 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3069 nt |
Genomic location |
chr19-:23581791..23598903 |
Exon number |
7 |
Exons |
23581791..23583851,23584979..23585314,23586481..23586549,23587704..23587910,23588060..23588139,23588802..23588909,23598696..23598903 |
Genome context |
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Sequence |
000001 TTGGAGAGGA GGGCGTGGCA TCCGGCATTT GGCGGGGCTT TTGTCTCTCG CTGCAGCCAG AGCTTGGGAT CGCTTTCTGC 000080
000081 TATTCAACGT CCTCCACCTC TGCCCCCCTC TCGCCCCAGC CGGTGACAGG CTGTTGCCCT GTGATCTGCA GGTCCTGGGA 000160 000161 CGTGCACAGA CAGCTAAGAT GCCAGGACAT TCCAGAAGGT GGGAAAGGAG GAGGAGACTG TAACGTATCC CTAATTGAGC 000240 000241 ACCCAGGTGG TGTGACACTT CTGCCCTGTC CCTGCCCTCA GAGGAGATTC TGACATATCA CTGCCCCAAA ATGCAGAGCA 000320 000321 CCTGAGTAAT TTGACTCTCC TGCCTGGACC CAGCGTACAG ATGGGATTGT GCTTCATTGC TGGACCCAGC ATTTAGGCCC 000400 000401 ACTACCTATG AGATTGCATG CTCCTGCCTG GGCTGTGCCC ACAGTGACCT TGTGACATAT ATCTGCATCC ATGACCTAAA 000480 000481 AGATGTGACA CTTCTTGCCT GCAACCTGCC CTGCACAGGA AAGATTGCGA CTTCTCCCTG GAAGCAGACA CCAGGTGATG 000560 000561 TGGCTCTCCT GCCTCTGTCT TGCCCCCAGG GAGCATTGTG ACAGGATCGT CACTCCCGTG GATGATCAAA GGTCAGTTCC 000640 000641 TGGTCAATAT AAGTAAACAA GCCTGTTTAA GAGTTCTGCT AGCAAGGAAG ACTGAGACAT ATTGTGGGGC TCTACGCCAA 000720 000721 TGTGACATTA CTGTTCTGCC TTGGCCTGTA CCTGAAAAGG CATTGTGACA TATTGCTGGG CCCAGCAACA AGGTGGCATG 000800 000801 AGTCTTCCGT ATGGACCCTG ACAACAGAGC ATTGTGACAT ATCTTTAAGA GCATCAACTA TTTGATGTGA CTCTCCTTTT 000880 000881 CTACCAAGGC TTTCCTCATA TGAGAGATTG TGACACATCT TCTGGCACAG AAATCAAGTG ATGTGTTTCT CCTGCCTGAG 000960 000961 CTTTGCTCAT AGAAAGCATT GTGACATATC TCTGGTCTCA GCACCCAGAG GTGTGATTTT GACGCACACT TCTGCCCAGC 001040 001041 ACCTGAGTAA TGTGATTCTT CAGAATTGGC CCGGCCCACA AATAGGATTG TGCCACACTG CTGGACCCAG TGCCTAAGTG 001120 001121 ATGTAACTCT ATTCTTCTGC CTTGGTGCTA CTCGAAAAAG ACATTGTAAC ATATCTCAGA GCCTTACACC CAGGTAATGT 001200 001201 GAGTCTCCTC TTCTGCCTTG CTGCTGCACA CAGAAGCGGA ATATGTACAG GATTGTTAAT CTCATCTTGG ATCTTCCTGC 001280 001281 ACTTGTGATT GTGACACATG CCTCTGTGTA GAACCTGAGT GAGTTTACTC TCCTGCCTGG ATTTAACCCA TAGATGGAAT 001360 001361 CGTGACATAT CACTGTACCA GAAACTAGGT GATGTGACTC TATTTTCTTG CCTCTGTGTT TTTATATGGG GCATCGTGAC 001440 001441 ATATCACTGG GCCTTGCACC CAAGTGATGG GAGTTTTCTC TCCTGCTTTG GTGCCGTCCA CAATGAAAAT TGTGAAATAT 001520 001521 TGCTGCCCTC CCCACTAGGT TATGTTACTC TCCTGCCTCT GCTTTGCCCA CATGGGTCAC TGTGACATAT TGCTGGGTCT 001600 001601 AAAACCCAGG TAATGTCACT CTCTTGTTTG GGTTCTGCCT GCAGGAGTCA TTGTCACATA TCTCTATGCT CATCACCCAG 001680 001681 GTAATATGAT TCCCTTTTAC TGCTTAGTTC CTTCTCACAA AACAACTTGT GACATATTGC TAGGCCCAAT ACACCTAGCT 001760 001761 GGTGTAACTC TTCTTTTCTT TTCTTTCCTT TTTTTTTTTT TTTTTTTGAG ATGGAGTCTC ACTCTGTTGC CCAGGCTGGA 001840 001841 GTGCAGCGGC ATGATTTCAG CTCACTACAG CCTCTGCCTC CTAGGTTGAA GCGATTGTCC TGACTTGGCC TCCCAAGTAG 001920 001921 CTGGGATTAA AGGCATGTGC CACCACGCCC GGCTAATTTT TGTATTTATA GTAGAGACAG GGTTTCGCCA TGTTGGCTAG 002000 002001 GCTGGTTTCG AACTTCTAAC CTCAGGTGAT CCTCCTGCCT CGGCCTCCCA AAGTACTGGA ATTACAGGCA TGAGCCACTG 002080 002081 CACCTGGCCT GATTCTTCTC TTCTTTCTAG GTTTCAACTG CAGCAGAGAT TGTAACAAAC CACTGGGCCC AGCCGCATAA 002160 002161 TGATGTTACT CTTTTGCCTT GGGCCTGCCC TCAGAAGGCA CTGTCACATA TTCATGGGCC CAACGCCAAG GTGATATGTG 002240 002241 TCTCCAGCCT GGACCCTGCC CACAGGGGGC ATTGTGACAT ATCTCTTGGC CCATCAGATG TTTGATTGTT ATCCCCTCCC 002320 002321 CTCTTCTACC CTGTGTTTGC CTATAAAAGA CACAGTCATA TGTTCCTGGG CCCAGCACCT AGGTGTTGTC TTACTGGAAT 002400 002401 GTGTCCACAT GGGGATTGTG ATATGTCACG TGGCCCAGTA CTTAACTTGA TGTGACTCTC CTCTCATGCC TAGGCCTTGT 002480 002481 AGAGAATCCC CTTCCCCTTT TGTTTTCCTT TTTTTCTTTG CAGATCCAGG AGATAATCAA CTAAGAGCCA GGCACCCGTT 002560 002561 TAGGTCTAAT AAACATTTTA CAAACTGCTC TCTCTTTTAA TTCACCTATC TGAGAGATTC CTCTGTACAA TAAAACTTGG 002640 002641 TCTCCACAAT CCTTTACCTT AACCTAAACC TTCCCTTTCA TTGATCCCAG GTCTTCAGAT TCCACCACTT GTCAACCACA 002720 002721 AAATATTTAA ATTTACCTGG AAGCCGCCCG CTTTGAGTTG TCCCGCCTTT CTGAACCAAA CCAATATATT CCTGCAAAAC 002800 002801 CGGCCATGAT TAAAACATCA AAAAATAATA CATGTTGGCG TGGCTGTGGT GAAAAAAGAA TACTTTTTCA CTGCTGGTGG 002880 002881 GTATGTAAAC TAGTACAACC ACTATGAAAA ACAGTATGGA GATTCATTAA ATAAAAGTAA AGCTACCATT TGATTAAGCA 002960 002961 ATTCTACTAC TGTGTATCTA CATGAAGAAA AAGAAATTAT ATGTGTAAGA CACTTGCACA CACATGTTTA TAGCAGCACA 003040 003041 ATTTGCAATT GCAAAAATAT GGAAGCAGC |
Predicted Small Protein
Name | NONHSAT063906_smProtein_1685:1888 |
Length | 68 |
Molecular weight | 7660.22 |
Aromaticity | 0.179104477612 |
Instability index | 63.5404477612 |
Isoelectric point | 7.71917724609 |
Runs | 11 |
Runs residual | 0.0208642650621 |
Runs probability | 0.0186202245026 |
Amino acid sequence | MIPFYCLVPSHKTTCDILLGPIHLAGVTLLFFSFLFFFFFLRWSLTLLPRLECSGMISAH YSLCLLG |
Secondary structure | LLLEEEELLLLLLHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHLHHHHH HHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL LLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii iiiiiii |