NONHSAT058393
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT058393 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1292 nt |
Genomic location |
chr18-:12774649..12775922 |
Exon number |
1 |
Exons |
12774649..12775922 |
Genome context |
|
Sequence |
000001 CTCACCGCGA AGGTCTGTAG TTTCACTTTT GAACCAGCGA GACCATGAAC CCGCCAGAAA GAAAAAACTG CAAACACAGC 000080
000081 CGGACATCAG AAGGAACAAA CTGGGGACAC GCTGCCTTTA AGAAACATAA CAGGTACCGT GAGGGTCCAC GGCTTCATTC 000160 000161 TTGAAGTTAG TGAGACCAAG AACCCACCTA ATCCCGGGCA CAAAACCACC TCAATCTCCC AAAGACCGAA AGCCCTGGTG 000240 000241 TCGCTGGGAC CAGAGGTGAG ACGTGGAACA CGTGGGGAAG ATGAGAAGGC GCTGGAGAAG GAGGGTGGTG GTCGCAGATG 000320 000321 GGAATGTGGT GAAGCCAATG AGCTGTGCGG GTAAAAATGG TTGATAGAAA TTGATGTATA TTTTACCACA ATTGTGTGTG 000400 000401 TGTGTGTTTG TGTGAGAGTT CTGTTTATCT GCACAATAGG AATAATAATT GTACTCGTAG TTTGCAGTGT TGTTGAGAGA 000480 000481 AAGAGGATCT TAAAGTGCTT ATCACAGCAT CTAGCGCCTT TTAAATACTG AAGAATAGTA ATACGATTAG CAGCCGAAGA 000560 000561 ATGTGCTATT TATATTAAAA TAAAAAATAC ATCAGGCCAT CCCTCAGCGA GGCAGCCAAA GTTAGCACCT ACGCAATGAG 000640 000641 CCATGCTGGT GGTGTGTGCT TTCGCATGGG TGTGAAAAGC TATGCTCTCA GCAGACCCAA AACCCCATCT AATCACGAGA 000720 000721 AAAACAGCAG ACACATGCCA GCTGAGAGGA TAGCGGGCCA GGCCTCCTCA AAACTGATGG GCTCATCAGC AACAAGGAAA 000800 000801 GTGTGAGGAA CTCTTAGCTT GGGAGGAGCC TGCGGAGAGT AACTACAACC ACCACCGGCA ACGGGGCATC CTGGGCCGGC 000880 000881 TCCCAGACCA GAAAATGACA TCAGGTAAAA ACTAAAGGAA GCTGAATAAA TGGTGGGCTT TAGTTATAAC AGTGGATCAG 000960 000961 CATGAGTTCA TTAATTGTGA CAAATTTGCC ATTCTAATGT AAGATGTTAA GAGGAGAAAC CGGGTGTGGG GCATATAGGA 001040 001041 ACTCTGTGTT AGCTTGGCAA TTGTTCTATA AATCTACAAC GAATCTAAAA TGTAACAATT ATTGGAAAGG AGGACTGAAA 001120 001121 AGATTCAAGA GAAAGTGATA ATATTGAAGA CAGGGGAAGA AACTGACATA CAGATAATAG GAGTCCCTGA AGAAGAAATC 001200 001201 CAAAGTGAAT AGAACAGTGA AATTTGTAAA TCAAGAAAAG TTTCCTGAAA TAAAATTTGA AACTACATAC TGAGAAAAAA 001280 001281 AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT058393_smProtein_635:805 |
Length | 57 |
Molecular weight | 6029.8983 |
Aromaticity | 0.0357142857143 |
Instability index | 55.9142857143 |
Isoelectric point | 11.0479125977 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.0406877465702 |
Amino acid sequence | MSHAGGVCFRMGVKSYALSRPKTPSNHEKNSRHMPAERIAGQASSKLMGSSATRKV |
Secondary structure | LLLLLLEEEEELLEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLEELL |
PRMN | - |
PiMo | - |