NONHSAT057123
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT057123 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1960 nt |
Genomic location |
chr18+:6896759..6898718 |
Exon number |
1 |
Exons |
6896759..6898718 |
Genome context |
|
Sequence |
000001 TACGAGAATA AAAAGAGAAT GAAGTTAGTA GATATATGAT TGCTAACAAC AAAAGTTGTT TTTCAAAGGA ATTTCTAGAA 000080
000081 ATGGGATTCT TAATAGGTAT TGTCTATCTT CGTAGCTTCA TTTATTCAGT GAGTTTTACC ttttatttta ttttatttta 000160 000161 tttatttttt gagatggagt ttcgctcttt ttgcccaggc tggagtgcaa tcgcgcaatc ttggctcact gcaccctccg 000240 000241 cctcctgggt tcaagtgatt ctcctgcctc agcctcctgg gtagctggga ttacaggcac gcaccacatg cctggctaat 000320 000321 atttttgtac ttttagtaga gacgaggttt caccatgttg gccagcctgg tctgaaactc ctgacctcag gtgatccgcc 000400 000401 caccttggcc tcccaaagtg ctgggattac aggcatgagc cactgagccc agccGAGTTT TACCTTTTAT TCGAATGAAA 000480 000481 ATATAGCAAG TTAGTTTTGT AGATATCTTG ATAGTCCTTC AGGAATAACA TTTTCCTAGG CTTGCATTGA CTTTAACATG 000560 000561 CCTGTATCAG ATAGACATTA TGTAGTTAAG TGGATACCAT AGCTGTTACT TTCCTTTAAA CATACTAATA ATAATTCTTA 000640 000641 GAATCAGAAT GATACTTACA AAAATTATTT TTGCAAATCT GCCATGATCA CCTTAAAGGG GCGCAGATCA TGACAATTTT 000720 000721 TGTCTGGACA TGCTTACTAA AGAATAAACA TTTGTCTTCT TGTTTATAAA GGATGAGAAG CACTCATTTA TCCATTGTAG 000800 000801 AGCATGTATG ATTTGCTGTC TCTAGTGAGA CTGATGGATG GCCTTAAAAT GAAGCATTCC AATCATGTTG AAAAGAAGTA 000880 000881 GCCTtgttga gcaaaaaagc caactgtaaa agttaacata ttgcatgatt ccacttatat aacatttttt aaattaaatt 000960 000961 ttattgatgg agactagatt agttgccaga ggttgggagg gatgatttgg aagggagatg gttttggtca ctaaaggcca 001040 001041 acatgaagga cccttatggt gttggaactt gtggtgctgg gatcttgact gtggtgatgg ataactgacc ctctataaaa 001120 001121 ttctactgaa attaatacac acacacacaa atgagtataa gtaaaacttg gaaatctgaa taagataggt aggttgtatc 001200 001201 aatatcagta tcctgattgt gacattatgc tgtagttctg tgaattgtta ccattgtgga aaatggcaga atacaaagaa 001280 001281 tctctctgta ttatgtctta aaaccacatg tgaatctaca attatctcaa taaaaattta atttaaaaga aAAGTAGCCA 001360 001361 GTAAAAGTCA TCTATGGTGT GAGGTAAGGA CGGTAGTGTT TCTACCATCA GGAGAAAAAc ttgagagatg ggtgcaccaa 001440 001441 aatctcagaa attaccacta aagGGTGTAG TGGAAggtag ggggtggagg aaggcatagt gaccaggaag gcatgctgat 001520 001521 ggcctcaaac gttttttttc tccttttggt attagattat atgatgtgtt cactttgtga aaattcatca agttgtatac 001600 001601 ttctgacttg tacattttat atataatata tACACATATA CACACACACA TTaacccgtt ttccacttgc tccaagaata 001680 001681 ctgcactggc agcgagctgc actttccttc ctaaatggaa aatgggttAA AAAAGAAAGA GAAGAGTCGA CAGAGACCAA 001760 001761 CAGGAGCCCC AAACATGTAT TCCTCTTCAC TATTGGCCTG GACATCTCCA CATAGGCAGT CATATAGAGA CTTGAAATAT 001840 001841 CATTCAAGGG ATTTGGGTAT CCAGTAGACT TTTAGTTACA TATACTACAA AACTGACTTT GTACTCTCAA GTAGACCTTT 001920 001921 CGTAGAAAGA AAATGTTTCT AATAAAAATG TATTAGAACT |
Predicted Small Protein
Name | NONHSAT057123_smProtein_35:283 |
Length | 83 |
Molecular weight | 9529.1015 |
Aromaticity | 0.231707317073 |
Instability index | 63.8258536585 |
Isoelectric point | 6.04400634766 |
Runs | 12 |
Runs residual | 0.0104397634885 |
Runs probability | 0.0552832244008 |
Amino acid sequence | MIANNKSCFSKEFLEMGFLIGIVYLRSFIYSVSFTFYFILFYLFFEMEFRSFCPGWSAIA QSWLTAPSASWVQVILLPQPPG |
Secondary structure | LLLLLLLLLLHHHHHHLEEEEEEEELEEEEEEEHHHHHHHHHHHHHHHHHHHLLLHHHHH HHHHLLLLLLEEEEEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHH HHHHHHHHHHHLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiTTTTTTT TTTTTTTTTTTooooooooooo |