NONHSAT057072

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT057072

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4044 nt

Genomic location

chr18+:5240743..5246490

Exon number

2

Exons

5240743..5241888,5243593..5246490

Genome context

Sequence
000001 GCATTTTTCA TGGAAAGCTC CTCATGCTTT TTAATTCCAG TTTATCCATT TGTGTGGCTT TAACCTCCAC ATCCAGGTCT 000080
000081 TTCTGGCTAA ACTGCAGTAT ATCCACAATG GGGCCAATGG ACACATAAGG GAGGCCCTAT CACAGGAACA CGAACACCCG 000160
000161 GAGTCGCTAG AAATCAGATT CCACCGGCTT TGCTTCAGGC CGACTTCCTA AGGAAGGCAT GGTAGCATCA CAGATGCTGT 000240
000241 TTGTCTCAGT TTCCTGAGAA GCCAGTTTCT TAGAGCTGTC ATTCAAGAGT GGGTCAAATT TGAGATATAA AAACCTTTCT 000320
000321 CAAGGTAGAC TCTTTGGCCC CTATGCCTAG TATGTCAGCT GGGCCTCTGA AGCTCTCCTC TTTGAGGTCC TGGCAGGCTC 000400
000401 TGGCCCCTGT TGAGAAGGGG AAGCAGTCAT GTGAACTCAT GTGCTGGAAG AATCCACTCT ACCCCTTCCC TGGCTTCTCT 000480
000481 GCTGCAATTT TTGTCTTTAA ACGTATTTTC AGGTGATTCC AGTTTGCATA CATAATTGAG AAATATAAGA TTTGGTCCCC 000560
000561 AGTAGAGAGC CAGGTGAACT TAAGAAGGAG TCCATCTAAG AAAATTGCAC AATTATCTAG TTTCACTTGG GTTTAGCTTT 000640
000641 TATGGCTTAC TTGATTTAGT AATCAAATGA TTTTCAAATG ATTTTGATCA GGTGACTCTT CGTAAACTAG AGAATGAACT 000720
000721 TGAGAGCCGA ATTAGCACAG TTTAAAAATA ATCATTTAGT TTTTGTTCTC TATTGTGTAA ATTATTGAGG TTTGACTGTC 000800
000801 TTGGCTAAAC TAAGGCTCAT CTAATATCTT TATTTTTGAT ATCCTAATTT CTTGCCAATT AATTGAAGGT AACATACTAG 000880
000881 CAGACCAGAT AACTACTTAT GCAAACCTCA GATAACCACT AATTTAAACA AAATTAAATC CTTTGCCTTC CCCAGATCCT 000960
000961 TTGCACATGG CCTGCTATCA ACAATCCTCT ACAATGATTC tcagcatcac ctagggagct tatgtaaaat ctcaaattcc 001040
001041 tgggccctat ccccagagtt tcttatcaag taagtctgca ttgggatctg aggatttgca tctctaacaa aaattcctag 001120
001121 gcgatgctca cactgttggt gtaaggTTTC CTTGATGGAG AACTATCAAA GCAGTCAAAG CTATCAAAAT AAAAAAGAAT 001200
001201 TCTGATTggg tgcagtggct cacacctgtc attccagcac tttgagaggc caaggtgggc agatcacatg aggccaggag 001280
001281 ttcaagacca gcctggccaa catggcagaa accccatctc tactaaaaat accaaaatta gccgggcatg gtggaacaca 001360
001361 cctgcaatcc cagctactcg ggaggctgag gcaagagaat cgcttgaacc tgggaggcag aagttgcagt gaaacaagtt 001440
001441 ggtgccaatg cattccagcc tggatgatgg agcgagactc tgtctcaaga aaaaaaaaac aaaaacaaaa aCAGAACTCT 001520
001521 GCCTCATAGC GTCTTTTAAG TTATACACTG GACCTATCCT TTCCTCACTG ACAGACATTT TAAAAATTTT TTGGTAAGGC 001600
001601 CTAGTTCATA TAAAATGTAA TCCAAGCCAA AAGTTAACAA GAATAAGGGG AGGAAAGGGG ACTCCAATAG CAGAGAAAGG 001680
001681 TATTTACCTG GGATATACAC TGCAAGAAAA TCAAAGCTAT AAGAAACGTC CATGAATAGT AGCCATAAGG CATCAGAGTG 001760
001761 ATAAAATTCC TGTCCCTAGG AGGGAATATT Ggagtttgcc agagaaacag aatgagagag acagagaggt ttattgtagg 001840
001841 aattggctca tatgattacg gaggctgaga agacccacga tctgccatct gcaagctgga gaatcaggaa agctggaggt 001920
001921 gtaattcagt caagtccaat ggccagagaa gcaagtgtac tgatatccaa gagcaggaga aaatagatgt cccagaacaa 002000
002001 gcagagaggc tgattttgtc cttcctctgc ctttttgttt catatggggc actgaatgga ctgatgccca tccacattag 002080
002081 tgagggtgga tcttctttac tcagtctacc agtagaaatg tcaatgactt ccagaaacac cctcaccaac acacgtggaa 002160
002161 ataatgtttt accaggtatc tgggcatccc ttggttcact caagttgaca caaaattaac catcacaGAA GGAGACTGGC 002240
002241 CTTACTCTGA AATTAGGAAA CTAAAGAAGT GACCAGAATG GAGACTAGGT AGAGACAACT AGTTCTCTAC CAAACATGTA 002320
002321 cagttattcg ttggtatctg aaggggattg gttccaggaa ctctcaggga taccaaaatc tgcaggtgct caagtcattt 002400
002401 atataaaata ttacagtatt tgcatataac ctttgcacat cttccatata ctttaaatca tctctacatt acttataata 002480
002481 atgaatgtgt aaatgctatg aaaatagtta ctacactatt gtttaTTTGT ATTTTTATTG AATTGTTTTG GGGTGGGGGG 002560
002561 CAGCTGTAtc tttcttagta atagaacccc tggttttagc tgggcacatg actgccctca ataaagatta aagtacccca 002640
002641 gccttccttg agattgtggc catgtgactg aactttagac agtgagatat aagcagatat cttctgtggc agtgttagga 002720
002721 aactattaaa gacagtaaga acattgccct ttgccttctt tttcctttct tcatttttct gcctggaatg caaatgtgat 002800
002801 ggctaacacc ctagcagcca ttttagatta tgaagatgag agtcactccc caggaagggt ggacctgaaa gctggattct 002880
002881 agatgtggaa tgacaatacc agccctggac tacctacctG TAGGCTGTGT GTGTGTGTGT GTGATTGACA GAGAGAGAGA 002960
002961 GAGATAGATA CCACAAGTAA CACAAAGCAT CATACCTGGG ACTGGGAAGG TTAATGTTTA AACATTTTAA atgtggcatt 003040
003041 ggtttgttga agacagtcaa gcagtaggtg ctgcaggctt tgttgaggct agaaagctgt tggtctttat taggtgatgg 003120
003121 caaaacaatg gatcacattt tcatgtgctg tgtcttggga ggcaaatgat gagaatgtag gattggggaa aatggtaagg 003200
003201 aaaatccaaa atgttcatgt tttctaaccc cttcttgcCA ATCTTAAAAG AAGGACAAAC AGGCTAGATT AAGCAAGTCT 003280
003281 ACAGTTACAA TTGGAAGGAA ACACAGCCGT ACTAAGGAAG TACTCTGTCT GTGGCCTGCA GTCTAGTTTG ACTAGGTCCT 003360
003361 GTATTTGAGC TTTGAAAGAG TAAAGAATAC AAGTGCTCGT ATACCCCTGA AGTAGTTACC AGCAGTGACT GCAAGGAGGT 003440
003441 AATCTTATGG GATGAAACTA TAACTCTGTA TTAACCATCA TATATAGCat atatgtgtat atgtatgtgt gtgtgtgtat 003520
003521 atgtgtatat aaatatatgt gtgtgtatat ACACACATGT ACAcacccta caacccagtg atttcaaaaa attaaacatt 003600
003601 tgtttagctc atgaatctgt gggttgggtg aacatttcta ttggtcttgg ctgggctcac ctgtacccag tcagctgcag 003680
003681 ggtctagctc ttcttatctt ggctgggatc tcacacatgt ctaggatcag ctgctttact agtctaggat tgtcttggct 003760
003761 gagacaggtg gactactcag ttctcctcca ctgccttatc cttcagctgg ccagcccaga aatgttgcca tgTTTACAGC 003840
003841 ATAAGAGCAA GCAAGAAAGA ATAATATGCA ACCACTTTTC CAAGCCTAAG GTGAAAGGGC GGGCAGAACC Tgtggtgtta 003920
003921 ggaggcaact cataccagcc catgggtcta ccgtttaatt ttcagaaatt tggcaagctg attgttaaca cagctgttgt 004000
004001 ttaatttatg tacttgtaat taaataattt acattaaaac aaag
[back to top]

Predicted Small Protein

Name NONHSAT057072_smProtein_3716:4003
Length 96
Molecular weight 10687.603
Aromaticity 0.0842105263158
Instability index 51.2147368421
Isoelectric point 9.63934326172
Runs 15
Runs residual 0.0288437629507
Runs probability 0.0431254784197
Amino acid sequence MSRISCFTSLGLSWLRQVDYSVLLHCLILQLASPEMLPCLQHKSKQERIICNHFSKPKVK
GRAEPVVLGGNSYQPMGLPFNFQKFGKLIVNTAVV
Secondary structure LLLEEEEELLLLLHHHHLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEELLLLLLLLL
LLEEEEEELLLLLLLLLLLLLHHHLLEEEEEEEEL
PRMN -
PiMo -