NONHSAT056405

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT056405

Source

NONCODE4.0

Same with

,

Classification

sense

Length

6185 nt

Genomic location

chr17-:78440635..78448592

Exon number

2

Exons

78440635..78443998,78445780..78448592

Genome context

Sequence
000001 GGCGGAGCAA GGCCACGTGA CCCTGCTCAG ACCGCAAAAT GTGCCGGACA GATTTAAACA GTGCCATCTT AAGGCTTGTT 000080
000081 ATGTAACTGA AAAACAGATC AGAAGGAAGG ACCTCAGGAG GGAGGGAGAG GGAAGGAGCG GAGATTGGGG AATGAAGGAC 000160
000161 ACCCGGAGAA AGGCCAGGGG CTGGGCCCCT CCCTATCCCC CACTGCAGGC CTCAATGGGT TGGGGTAGCC GCTGGGGTGC 000240
000241 TGCACTGAGG GGGCCTGCCC TGCTCCGCTC CCTGCCAGTT GGTTTAGAGG AGGGGGTGGT TGCTGACCGG GCAGGATGTC 000320
000321 TTCTAGAAAT AATTTTTGGC CTGGGGAACT GGTTTCTTTC TGGGCTTCCT GGCAGGACCA CGGCTGCTCA CCCAGGGATT 000400
000401 GACCAAGGGG TGTGTGTTCC TGGGCTCTGG GCCTGCTACT GTGCCCATTG CTGGCCAGGA ATGTTTTGCC TGGAGTCAGT 000480
000481 CACACCATAC CCAGGGTGCC ACAGTATATA GATGGGCTAT GGGGGTTGGC GCTTACGGGA GAAGTGGCCG GTGGGGAGGG 000560
000561 AGAAGGTGGG CCTTGTGGAA AGGGAGGCCA CCAGGCCTGG AACCTGAGCT GTGAGGACAC TTACTCACCT GAGAGTGTGG 000640
000641 CGGCATCCTA GAGCAGTCAC CTTGGGGAGC CCTGGCGCCC AGAGTACTCC CAGCTCCTTG CTGCCCTGCC CTCTCAGCAG 000720
000721 AGCTCCAGGC AGAGTCCCTG CTCCAAGGAA GGGCCTTGGA GGTGGGGAGC TGCCCAGCCT CACACCCAAG AGGCATTGGT 000800
000801 GGGTCAGAGG CACATCTGGC CTGGAGGGAA GTGTGTGGGC ACCAGGGCCT GGCTGTCGGG TGGGGAGAGG CAGGAGCAGA 000880
000881 GCCTGGGATT GAGCGAGGAG AGGCTCTGAG CCCCGCCCCA TCCTGGAATC AGGTCGGTTA CTCTCAGGGT AGCTAGCCTC 000960
000961 GTTCCTCCTC TGCAGCCACC CCTGCTCCTT GGGTTGACTT GGCTTGGCGG CTGTCCCCAT TCCCTTCTCA TGCCCACCAC 001040
001041 GCAGCCCAGT GTTGATGCAG CAGCCCACCA GGCACTGCCC CCCACCCCCA TCTCCCCGAG GATGCCAGCA CATGGGCGTG 001120
001121 ACAGCAGGCC AGACCTGGAG CATGAAGAGC TTGGGTCAGC TCTTTACAGA CTGGCCCTGT GCCTTGGGGC AAAGTACTTG 001200
001201 ACCTGGGAAG CTACCCGCTC TGCGTCTCCA GAATGGAGAC CGGAGCCTGC CCTGGCCACG CATCACAGAG CTTGGTGGGG 001280
001281 ACCGAACTCA ACTCAGACAC CGATAAGCAC TTCACGCAGG TGCAGATGTC AGGACTGTGT CTTCCGCAGG TCAGAAAGAC 001360
001361 AACCGCCCTG GAGACAAGTT CCAGCTCACA TTCCCACTGC GGACCAACTA TATGTATGCC AAGGTGAAGA AGAGCCTGCC 001440
001441 AGAGATGTAC GCCTCCACTG TCTGCATGTG GCTCAAGTCC AGCGCCACGC CAGGTGTGGG CACGCCCTTC TCCTACGCTG 001520
001521 TGCCCGGCCA GGCCAACGAG CTGGTCCTCA TTGAGTGGGG CAACAACCCC ATGGTGATCC TCATCAATGA CAAGGTAGAG 001600
001601 CAGCCCCCGG GCTCACAGGG CGGCAGGGCG AGGCCCCAGG GCCCCAGCTC ATGTTGCATG CTGAGACAGG GCTATGGTGG 001680
001681 CCTCAGATGT TGATGGGGCC CCAAGGAAAG TGTTTGCCAG GTGGGACTGA GGGAGGAGGA GGGTGAAGAC CAGGAGAAGT 001760
001761 GGTAGGAGCC CCCTCACCTG TACTGGGAGA GCAGGGAGAG CTGGACCTTC CCGGATGCCT CCTGGGGTGG GTACGGGAGA 001840
001841 TGACGGAGAA CGAGCCATGG GGCCTGGCCC TGCCCGATGA TGTGATCTGG ACTCCTCCAC CAGCTGGCCT TGGAACTGGC 001920
001921 TTTGCCCCTC CATAGCAGGG ACCCAGAGAT GCTCTAGCGG GGTGAGGGGT CCTTAGAGAT TTTTCCTGAG TCCAAGTCTA 002000
002001 TCCCACTCAG CCCCCTAACT CTCGGGAGGA GGACAGGTCT GTGTGATCCC TTGGAACAGG ACAGCACAGG CAGCCTTTCC 002080
002081 CTCTAGTGAA CATTCTCCAT CCTCCCCTGT TAGCTATGGA ACTAGCTGCC AGCTTTCAAA CTGTCTCAAG TCCAGGCCAG 002160
002161 CAGTGGTAGT CAATGGCTAA AACCTGGGCT GGGAAGTGGA TTCCACGCCC TTGTTCCTGT TGCTCTTCCC CACAAAGGGC 002240
002241 TGTGCCATTC TGGGCCCCCT TTCCCCAAGC GGAAAGGGTG TGAAGTTTCT TTCCTCACTG TCTGCTGGAC CATCATCCTC 002320
002321 CCGACCTGGA ATGGCAGTGG GAGAGTGAAA TTCCAGGTTG GAGGCTGGTC TGAGCTTTAA AAGGCATCGT GCTCCATGAC 002400
002401 ATCTCTCAGA TCCTCGGCAA AAGCTTGCCG TGTTGTAGAG TGAGAGGGTG TAACAGCTAG AGATGGGACA TCGGAAGAGA 002480
002481 GAGGAGAGGC CAGCAAGGAG GCTGCACAGA TGTCGCACGG AGCCTTGAGA GGCAGCAGTG AACTCAGACA CCAGGGACGG 002560
002561 CTCTCCCTGG TGTAGACTAG GGCTTGTTGT GTAGACTAGC AAAGAGGGAG GAGGGTGAGT AGGAGTGAAG AGACTGCACA 002640
002641 CCCACATGGC CCTTGGGGGT TCCCTCGGTA GAGCCTTACA TTTCCTGTGT GATTCTGTGC CCCACGCCCA GGCGGGGCTG 002720
002721 ACAGACGCTG AAGTCTGGGG CAGTAGGTGC TGTGAGAATT CAGTAATAGT TATTGACATT TACTTTGCAA GTAGAGATAG 002800
002801 GAACAACTGA GGCAGTGAAC TGTCTCTGAA GGGTGAAGGC AGGCCGTCCT GGGATGGTAC CCTGTGCTCT CCCGTGGAGG 002880
002881 AGAGGGGATG GCTGAGGACA CTGGCCCTTA CCCCAGGGCC AGACAGCATC CATCCCTGCT GTTTGCATCT GAGAGCAGCA 002960
002961 TGGGGCCTGG GAGGTCGGCC TGTGTGCCCA GCTCAGCTAG CTCTGCCCCA GGACGGCCCT GCCCTCGACA ATCCCACATC 003040
003041 CTCAGATCCT GCAAGGCTGG GGTCTGCCCC TCCCTTCTCA CCTCTGGAGC TGTGCTGCAC TGCTTCAGCC CAGAGGGCCC 003120
003121 TGAGAGAGGA GCGTGCCACC CACAGCCCGG GAAGCCGGGC CCCAGCACCC CTCTCCTTTG GCCTCCGGCA GTGCAGACCA 003200
003201 GAGGGGACCT TTTAAGGAAA GAAGCCGTGT TTCGATGAAG ACCTGGCCAC ATGGGGCCAC TGGGACTTCA ACCCAGCCCA 003280
003281 TCGGTGGGAA GGTCCTTTTT GGGGGCCTTT GACAGCCATA TCCCTCCCAG CACACCAGGC GCCAGGTGAG CTGGTTCAGA 003360
003361 CCCCTCCAGG GGTACTCCAG AGACCTCACG TGTGGAGCCA GGCCTGGCCA GGGCAGGGGC CTGAAACCCA CTCCCCCATC 003440
003441 TCATGGGGCT CACGGCCTAC AGCAGCCCAC AAGCTGCCAC TGGCCGGCGA CACTGACACC TGAGCAGTGT CCAGAACCTT 003520
003521 TTTGCCTTTT TTTGTTCCCC GTGAAAAGCA ACATGGACAT TTCCTTCTAG TCCTTCCAAG GAGGGGAGAG AAGTGTATGT 003600
003601 GCATTTGTGT GTGTGTGTGT GTGTTGTGTG TGTGTGTGCG CTAAGTGAGA AAGAGAGCAG GCTCGGGAGG CCCTGCCCAG 003680
003681 GGTAGGAGGA GCTTCCTGCT TTGCACCATC TGGTGGTCGC ACGCCCTGAG GGCACCCCGA CTCTGTCTCC AGGAGTCTCA 003760
003761 TCAGCAAACC GCTGACAAGT CTTTCTAGAA ATTCTACTGC ACTGCCTGGC TCAGCTGCAG CTGCAGACAT TTCTGCAGGA 003840
003841 GGAGCAGGTG TTTCTGTCTT CTGTTCCTTC TAGGGCCACC TGTCCCCTTA AACACAGGTC CACGTTGTGT CAAGAACCTA 003920
003921 GTGCATCTGT GTGTGTCTGT CAGTGTCTCT GTGTCAGTGT TCTTGTGGGT GTCTGCACGG TACCCGGCCG CCGTTCTGCA 004000
004001 ATGCATCACT CCCGCAGAGG GGGGTGCAGA TCAGGCGCCG TGCTGCGCGT TGTTGTTCAA CAGTGGCTTT TTCTTAGATA 004080
004081 ATCGTGCTTC CTCAGCGCCC GTCGGGTTGT GGCATCCTTG GATCTGCAGG GATCTTCTCC GTTTGCATGT TCCTCGGGGT 004160
004161 GGCGTGTTCC TTGCTCCCTG GGTCCGACAT GTGTTCCCGC ACCTGCATGG ACTGCCCCGG TTCTGTGTTG TGTGCCGAGT 004240
004241 GCCGCCCAGT GTTCTGTGAC CACCCGTGTA GCTACTGAAA ATGGCTGGGT AAGCAAGTCA AGGGTGTTGG AGGAGGTCAA 004320
004321 GAGAGAGCTC AGTTTCCCTC TCCCCCTCCC CAAACACACC AAGAAGCATT TTTAACGTGT AGGTTGAGAA CAAGCCTAAA 004400
004401 GGATTCCCAC AGCTGGGAGC CAGCAAGAGA GCTTGGAGTC GCCTCTCTAG ACCAGATCTA GCCCCACCCT CACTCCAGCC 004480
004481 ATCTCGGAGC CCTTGTGTAG CAACGCCCGG TGCGGGCTGT GTGGGGTGCT CCCCTGCCAG CACCTCCGGC CAGCCCCGCC 004560
004561 CCTGCCGATC TACTGGACCG CAGACCACCT TCTGCCCCCG TGGGCCAGGT GGGAGCTGTC CGTTCAGGAC CATGAGCCAT 004640
004641 CCTCTGCCCA GACTAGCGAG GGGCAGAGCA CACCCCAGTG CTTACGCCTC CACCCCTGCA GCCTCCTGGC CCGCTCACCT 004720
004721 TCCTCACCCC TCCTCTGACC CACCCATGGT GCCAGGGCCG AAGCTGACCT TTAGCTCCCT CCTGCCCCTT GCTAGGGTCT 004800
004801 GAGCCAAGCC CCTCGACTCC CTCACTGTGT TGACACTTGG CACTTTGCTG GCCCCGAGAA AGGTCGATGA CACAGCCGCA 004880
004881 AATCTAATCC ACGTAGTTCC CATTTACTCC TTAATCTGAT TGATGTTCCC TCTTGCACTG AATAATACAT GCCTCTCTCA 004960
004961 GGTAAGCCAT TTTATAAAAC AAGAAGATAA AAAGCACCGT TGAGGCAGTG TTTGCTTTTG CCGAGCTGGT GTCCGACAGC 005040
005041 TCCCTGGGTG TTCGGGGTGG GAGAGCTGTT GACAGAAGCT CTCCGGGCCC TCAGGGGCTT AGATCCCACT TGAGTCGTAA 005120
005121 GCCTTCTTGC TTTTGATAAC ACAGTATTAT TTCTCTTACT GTAGAAGAAA AAGTTTATTA CCAAACAAGA GTATTTTTAT 005200
005201 GAAAGAAAAG GACAAACCTA TAAATTAACT CAACCTATAT CTCCCTTGAA AATACTTTCA GGCTCCACCA AAACGTAGAA 005280
005281 CTGAAAGCAT GTATTTTGGA AGAAAGAGAT ACATTTTGTA TGCTTTCTTT TCCTTTTGTA GATTCCCAGT TTATTTTCTA 005360
005361 AGACTGCAAA GATCACTTTG TCACCAGCCC TGGGACCTGA GACCAAGGGG GTGTCTTGTG GGCAGTGAGG GGGTGAGGAG 005440
005441 AGGCTGGCAT GAGGTTCAGT CATTCCAGTG AGCTCCAAAG AGGGGCCACC TGTTCTCAAA AGCATGTTGG GGACCAGGAG 005520
005521 GTAAAACTGG CCATTTATGG TGAACCTGTG TCTTGGAGCT GACTTACTAA GTGGAATGAG CCGAGGATTT GAATATCAGT 005600
005601 TCTAACCTTG ATAGAAGAAC CTTGGGTTAC ATGTGGTTCA CATTAAGAGG ATAGAATCCT TTGGAATCTT ATGGCAACCA 005680
005681 AATGTGGCTT GACGAAGTCG TGGTTTCATC TCTTAAACAC AGTGTGTAAA TTTATTCAAC TAACGATGGG AAATGTATTA 005760
005761 CTTCTGTACA CAGTGGACTG AAGTGCAATT TGTTGAAAGG GAACAAGTCA TTGAAGAGAA AAAAAAAGCC CAATACTTAG 005840
005841 AGTCCCAATT TTGTCTCATT TGCCAAAAAA AAAAAAAAAA AAAAAAGCAA ACCCCCTATG GTTGATATTG TTATAATGTA 005920
005921 TATACTGTAT AATATGAAAG AGAATCGATG TATCTCACTT TTTCATTATT TGCTAACCAA AGCTGTACAT TTTTCATATG 006000
006001 ATCTGCAGCC TTTTGGGTAT CAAATGGGTC AAAACCATGG GACCTGCCAC CTCCCATCAG CAATTCTGGA AATACACTAT 006080
006081 TTCTACTGGT ATTCTTGCTT TTTTTTTTTT TTCATTTTCT TGCTGAAATG ACATGAATTG TTGAGTTTAT TTTTACACAG 006160
006161 TAAAGAGTGG AGAAAGAAAA AAAAA
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Predicted Small Protein

Name NONHSAT056405_smProtein_5897:6130
Length 78
Molecular weight 9423.0305
Aromaticity 0.246753246753
Instability index 53.0780519481
Isoelectric point 6.94146728516
Runs 10
Runs residual 0.00621118012422
Runs probability 0.0517311429077
Amino acid sequence MVDIVIMYILYNMKENRCISLFHYLLTKAVHFSYDLQPFGYQMGQNHGTCHLPSAILEIH
YFYWYSCFFFFFIFLLK
Secondary structure LLLEEEEEHHHHLLLLLHHHHHHHHHHHHHHHLLLLLLLHHHLLLLLLLLLLHHHHHHHH
HHHHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH
HHHHHHHHHHHHHHHLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTT
TTTTTTTTTTTTTTTii