NONHSAT056107
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056107 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2168 nt |
Genomic location |
chr17+:75084725..75091068 |
Exon number |
3 |
Exons |
75084725..75085031,75085235..75085353,75089326..75091068 |
Genome context |
|
Sequence |
000001 AAGTTGCTGA CGGAGCTACT TCCGCCCAGG GGAGTGGGAA GTAAGTGGAG ACACGTGCTT TGGCCTGTTG GAGGGGAAAC 000080
000081 CCGCTCTCGC CTCCTGGTGG TCGCCGACTC GCAGTCCGCA GGATGACTCA GGGCAGCCCT GACCACAGTT CCGCCGCCAT 000160 000161 CGGCCCTAGC CTGCGGAATT GGGCTCGCCC CGGGACGATA ACAGAGCTCT GCCGGGGGCT GGAGGCACTG ACCGGGTGAC 000240 000241 CAGAGACCCA GAGACCAGAC CCCCTCCACG GCGCCCGGGA TTTCGGGGAC GGCTTCTCCC ATCGCAAGTT TCAACAGAAA 000320 000321 ATGAGAAATA TCCCCCGACG ATTGGCTGAA AACATGCAGC AACCACTATT TTCTTCCTGC CCCTCGTTGA TGAGAGCATT 000400 000401 CGAAGTGACC TCAGCAGGGC ATCCAGGTCA GTTTCTGGAA GACTTGTGTG TGTGATGAAT GAATATCTGG TTTTGTCTCT 000480 000481 GCTGGGCCTG TGTGCCTGGA AAGGAATTGT TTTGGCCTAG GATCATCCAG GTTTGTTTGG TTTAGTTCTT GACCACATAT 000560 000561 TTTTTGAATG GTGACTGCTT AAGACCCTGT TGTGTATGGC TATAAATAGA TACACGCCAA GGTGACCACA TACTCTGTGG 000640 000641 TTCCTGTGCC CGCCGGCCAT GTGTCTGAGT GTGTAGCCTC TCATCATCTA AAGGAACTTT GGCTGCAGAG GGGAGGCCTG 000720 000721 GTCCCATGGG AAGTTTTGGG AGCGCAGCAG CAGGTGGGTT CAAACGACCC AGCAAGTGCC TCCTTAGCAC TTAGAGGCGG 000800 000801 AGGCCACCAC GTTGTCCACG TGGGGTTTCT GATCCCAGCT CCCCACCAGC CTGCTGGACC TCGGGCAGGT CCCTCCCTGT 000880 000881 TTGTACCTCC ATTACTTCTT CAGTAAGATG GGGACACTGA AGATGACCAT GCCTCCCACC AGATTGGTGC TTTTTTTGTT 000960 000961 TTAATAAGGG ACAGAGTCTC ACTATGTTGC CTATAGGCTG GTCTCAAGCT CTTGGCCTCA GTTTTCCTGC CTCAGCCTTC 001040 001041 AAATATGCTG GGGTGACAGG CATGAGCCAC TGCACTGGCC CAGATTGGTA CATTTGAGGG TTAAATGAGC AAATCCTATA 001120 001121 AAGCACTCAG GAGAGGGCTG TGGGGTTTGG GCTGGGGCCT GGGAGCACTT TAGACGTGGT AGCTATGTTG TTGTCACCTT 001200 001201 TCTCCTCTTT CAAAGCATTT TTTGTTTGTT TGTTTTTGTT TTTGAGACAG AGTTTCGCTC TTGTGGCCCA GGCTGGAGTG 001280 001281 CGGTGGTGTG ACCTCGGCTC ACTGCATCCT CCGCCTCCCG GGTTCAAGTG ATGGGATTAC AGGTGCCTGC CACAACGCCC 001360 001361 AGCTAATTGT TTGTATTTTT AGTAGAGACG AGGTTTCACC ATGTTGGCCA GGCTGGTCTC GAACTCCTGA CCTCAGGTGA 001440 001441 TCCACCTGCC TTGGCCTCCC AAAGTGCTGG GATTACAGGT ATGAGCTACC GCGCCCGGCA CAAAGCATTT TCAGCTGTGA 001520 001521 AATTCCCTGG GGTGCTGCAG TAGAGGAAGG TTTGGGGTCT TGACGGGTGC TATTTGCCAC GGAAAGATGC CTTCCTGCTC 001600 001601 CCAGGGCAGG AGAGCCGAGG TAAGACTTAC TGTAGGCTGT CGTTTTTTTT GTTTGTTTTT TGTCTTTGCG ATGGAGTCTC 001680 001681 ACTCTGTCGC CAGGCTGGAG TGCAGTGGCA TGATCTTGGC TCACTGCAGA ACCTCCACCT CCCAGGTTCA AGCGATTCTC 001760 001761 CTGCCTCAGC CTCCCAAGTA ACTGGGATTA CAGGCACATG CCCCCACAAC CAGCTAATTT TTTATTTTTA GTAGAGACAG 001840 001841 GGTTTCACAT GTTGGCCAGG CTGGTCTTGA ACTCCTGACC TCAGGTGATC CGCCCGCCTC GGCCTCCCAA AGTGCTGGGA 001920 001921 TTACAGACAT GAGCCACTGC GCCCAGCCAG GCTGTTGTTT TTTTACCTCC TTGTTTGCAC AATTTGGGCC ACTCACAAGA 002000 002001 GTGTATACCC TGTGATAAAC AGTTACCTAC ATTCTCCTCT GCATGCTTGT CTTTAGAGGA AGGAAATGTA TTAATTGCCC 002080 002081 AAAGTAATAT ATTGTGTTAA GATGTGATAT ATACTGGGGA AAAAAAAAGT GTATATTGAC ATTTCTGGAA TAAACCACTT 002160 002161 TGATTCCC |
Predicted Small Protein
Name | NONHSAT056107_smProtein_1586:1780 |
Length | 65 |
Molecular weight | 7131.3835 |
Aromaticity | 0.078125 |
Instability index | 66.890625 |
Isoelectric point | 9.13336181641 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0389654360243 |
Amino acid sequence | MPSCSQGRRAEVRLTVGCRFFCLFFVFAMESHSVARLECSGMILAHCRTSTSQVQAILLP QPPK |
Secondary structure | LLLLLLLLEEEEEEEELLLEEEEEEEEEELLLLEEEEEELLLEEEELLLLLHHHHEEELL LLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL LLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooo oooo |