NONHSAT055941
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055941 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1701 nt |
Genomic location |
chr17-:73774153..73775853 |
Exon number |
1 |
Exons |
73774153..73775853 |
Genome context |
|
Sequence |
000001 GAGCGGTTTG GTCGTTCGTT GGGCGGTGCT GGTTTTTCGC TCGTCGACTG CGGCTCTTCC TCGGGCAGCG GAAGCGGCGC 000080
000081 GGCGGTCGGA GAAGTGGCCT AAAACTTCGG CGTTGGGTAG GCGTTCGTAG GTTTACCCGC GGCTTCAGGT TCTGCCAACC 000160 000161 GTTGGCGCCG CGCGCCGCGG CCGTTGGGAG CCGAGCGGCG GGGGCTGCTC GGGCCGCTGG CGTCGGGTCG GGTATGGGGC 000240 000241 CGGGAGGTTT CCCCTTGGGG CTTTGTTCCG GAACTGTGTC CCCGCCTTTT CCCGGCGGTG ATTCAGAGGT CCCGACGCCG 000320 000321 GGTTCCGGGC AGTCGGGCCT CCGCCCGTCG AGGAAGGGAA GTGACTCCTC CCCGCGCTCC CCCTCCCGGG GGAGGCTGCC 000400 000401 GCTCCTCGCA GCCTGAGTCA TTAGGGGAGG GGGAGGAGGT TGGCGGCCCT CGGCCATCTG CTGCCGCGAG GTGGGGCGCG 000480 000481 GGGAGGCGGG AGGCCCGGCG GTGGGGCCAG GATCTGTTCC TCCCCCCGCA GCCCTGGGGG GCGGCCCGGG TGAGCGCGGC 000560 000561 GGCCTTATCT TCGGGGCGTC TTTCTTAGGT GAAAGAAAAT GGCCCGAACC AAGCAGACTG CTCGTAAGTC CACCGGTGGG 000640 000641 AAAGCCCCCC GCAAACAGCT GGCCACGAAA GCCGCCAGGA AAAGCGCTCC CTCTACCGGC GGGGTGAAGA AGCCTCATCG 000720 000721 CTACAGGTAG GTCGGGCGGG GGAACAATGG CCCGGCGGTG GCCGGCTTTG TGCGGCAGCG TCCGCTCACT CCTCCCCTGC 000800 000801 TCGCTGCAGG CCCGGGACCG TGGCGCTTCG AGAGATTCGT CGTTATCAGA AGTCGACCGA GCTGCTCATC CGGAAGCTGC 000880 000881 CCTTCCAGAG GTTGGTGAGG GAGATCGCGC AGGATTTCAA AACCGACCTG AGGTTTCAGA GCGCAGCCAT CGGTGCGCTG 000960 000961 CAGGTAAGAC AAAGGCCTGG AGCCGGGGGA GGGCTGGGCG GTTTCCGCTC CCCGAGTGGG ATTAATAGTG CGGCTCTCGT 001040 001041 CCTCAACAGG AGGCTAGCGA AGCGTACCTG GTGGGTCTGT TCGAAGATAC CAACCTGTGT GCCATCCACG CTAAGAGAGT 001120 001121 CACCATCATG CCCAAAGACA TCCAGTTGGC TCGCCGGATA CGGGGAGAGA GAGCTTAAGT GAAGGCAGTT TTTATGGCGT 001200 001201 TTTGTAGTAA ATTCTGTAAA ATACTTTGGT TTAATTTGTG ACTTTTTTTG TAAGAAATTG TTTATAATAT GTTGCATTTG 001280 001281 TACTTAAGTC ATTCCATCTT TCACTCAGGA TGAATGCGAA AAGTGACTGT TCACAGACCT CAGTGATGTG AGCACTGTTG 001360 001361 CTCAGGAGTG ACAAGTTGCT AATATGCAGA AGGGATGGGT GATACTTCTT GCTTCTCATG ATGCATGTTT CTGTATGTTA 001440 001441 ATGACTTGTT GGGTAGCTAT TAAGGTACTA GAGTTGATAA ATGTGTACAG GGTCCTTTTG CAATAAAACT GGTTATGACT 001520 001521 TGATCCAAGT GTTTAACAAT TGGGGCTGTT AAGTCTGACC ATACATCACT GTGATAGAAT GTGGGCTTTT TCAAGGGTGA 001600 001601 AGATACAAGT CTTAACCACA GTGTAACTTA CAGTTTCCTT TAAAAAAAAA AAAAGTAAAC CTGGCAGCTA TAGAATACAC 001680 001681 TATGTGCATT TATAATAGCT A |
Predicted Small Protein
Name | NONHSAT055941_smProtein_746:1024 |
Length | 93 |
Molecular weight | 10099.1699 |
Aromaticity | 0.054347826087 |
Instability index | 56.2434782609 |
Isoelectric point | 9.59100341797 |
Runs | 11 |
Runs residual | 0.0156396621833 |
Runs probability | 0.0249875543993 |
Amino acid sequence | MARRWPALCGSVRSLLPCSLQARDRGASRDSSLSEVDRAAHPEAALPEVGEGDRAGFQNR PEVSERSHRCAAGKTKAWSRGRAGRFPLPEWD |
Secondary structure | LLLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLHHHLLLLLLLLLLLLLLL LLLLLLLHHHHLLLLEELLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |