NONHSAT055833
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055833 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2454 nt |
Genomic location |
chr17+:72978488..72980941 |
Exon number |
1 |
Exons |
72978488..72980941 |
Genome context |
|
Sequence |
000001 CGCGGAGGTA GGGGATGCAG GCTGGGGGTG AGCAGCAGCG ACGGTGCCAT CGGCTGTCGC ATCGGCGTCC TCAGCCCCGC 000080
000081 CCCGCGCCTA AGCGGCGCTC GCTGGGAGGG CCTGGCCATC TTCGCGCGGT GGCCGGGCGC TCCCGGGGTC CCCTGCCTGT 000160 000161 GCCCCGTTCC CCCATCCAGA ACCTGGGCTG GAGGTGCTAG GGAGCTCTGG GAGCCTGGGC TGCACGCAGG GAAGTGCTCT 000240 000241 CGGCCGCCGG GGTCACAAGA CTCCAGGGCT TCACAGTGCC CAAGGCTTGG TGGACATCGA GCCCACCGGG GAATCTTTGC 000320 000321 CATCAGCGCC GTGTTTTGAT GCCCGCGGCA AGGAACACCA CGAAATAGGT TTCCTGACAC TCAGGTGAGG TGCCAGGTCC 000400 000401 TGGGTTACCA AGGTCAGGTC AGGTGGTCTG TACTTGCCAC CCCTGGGTCG GCTCTCTACC CTGCTTGACT ACATCACAGG 000480 000481 AAAAGGCTGG AAATGGATCC GGGGCTTGTT GACCTGTAGC TCATGGAGGC TGAAGAATTT CCTCCTTGAA GGCAGACCTG 000560 000561 ATTTTCCTCC TCACGGAAGA GTTTAGGCCA GTCATAGGGT Gtttttcttc tatttatttt atgttatgtt atgttatgtt 000640 000641 atgttatgtt atgttatgtt atgttatgtt atgttatgct attttatttt attttagaga cagagtctca ctctgttgcc 000720 000721 caggctggag tgcagtgggg ccatctcagc tcactgcaac ctctgcctcc cgggttcaaa tgattctcct gcctcagcct 000800 000801 cctgagtagg tgggattaca ggcgtgcacc accatgtctg tctaattttt gtatttttgg tagagatggg gtttcgccgt 000880 000881 gttggcaagg ctgatctaga actcctgagc tcaagtgatc cgcccgcctc ggcctcccaa agtgctagga ttacaggcgt 000960 000961 gacccactgt gcctggcTTC TTCTTTAGTA AAtaaactat tttatcaaag tataatatat cttcagaata gtgcacacat 001040 001041 cttaagtgta cagttgggtg aattttcaca aagtgaacac acctgtgtaa ccagcaccca gctcaggaga tagaaTTCTC 001120 001121 CTgaatggga gttagtgttt aatggtacag agtttcagtt ttacaagatg aaaatagcta cggagatgga tggtggtgat 001200 001201 agttgtacgt tataaatgta ttgaatacca ctaaactgta cactcaaaaa tggtaaatgg taaatcttat gtgtgtttca 001280 001281 ccacaatcgt aaaaaaaAAA AAAGAAAAAA GATCAgctgg gtgtggtggc acaagcctgc agtcccagcc atttaggagg 001360 001361 ctaaagcagg aggatcactt gagcccagga ctttgaggtt acagtgaact atgattatga cactacaccc cagcctggga 001440 001441 tcccatctca aaaataagtt taaaaaaTTT TAGAAAAAGA TTCCCAGCCA CTTAGAATTC TCCACATGCC TTCCCAAAGC 001520 001521 CAAACACTAT CTTGATTCAT TTTGCCAGTT TTTAACttta ttattattta tattttatag agacagaggg tggctgtgat 001600 001601 gcccaggctc gtctcaaact catggcctct agtgatcctc ttgcctcacc cttccgagta gctgggattc cagacACATG 001680 001681 AACtttattt ttatttttat tttttgagac agagtctcgc tctgtcaccc agactggagt gcagtggcgc aatctcggct 001760 001761 cactgcaagc tccacctacc cagttcacgc cattcgcctg cctcagcctc ctgagtagct gggactacag gtgcctgcca 001840 001841 ccacgcccag ctaatttatt ttttattttt ttagtagagt cggggtttca ccgtgttagc cagaatggtc tcgatctcct 001920 001921 gacctcgtga tctgcctgcc tcggcctccc aaagtgctgg gattacaggc gtgagccact gcacctggcc Atgaacttta 002000 002001 tataaaatgg aatcatgcag tgctgtgata gaatcataac cactaaagat atccacatcc taacccccag aatctctgaa 002080 002081 tatgttacct tgcccaacat aagggacttt gcagatgtga tttagttaaa gacattgaga cagggagatt atgctgtatt 002160 002161 attcagtgtg cccagtttaa gcagaagagt cctttataag agggaggtgg aaaaggtaag agtgatggga tgtgaaaaag 002240 002241 actccacctt ctgttgctga ctttgaagat tgacaaagag gccatgagcc aaggactatg gggtggcctc tagaaggtgc 002320 002321 aaaagacaag gaaacagata ctcccctgga acctccagaa ggaacacagc ttctaccaat gctttgactt tagccagtga 002400 002401 tccttgtcag acttctacag aattataaaa taataaattt gtgttgtttc aagc |
Predicted Small Protein
Name | NONHSAT055833_smProtein_620:808 |
Length | 63 |
Molecular weight | 7047.5264 |
Aromaticity | 0.129032258065 |
Instability index | 52.1888709677 |
Isoelectric point | 7.54913330078 |
Runs | 11 |
Runs residual | 0.0237788018433 |
Runs probability | 0.025509466686 |
Amino acid sequence | MLCYVMLCYVMLCYVMLCYAILFYFRDRVSLCCPGWSAVGPSQLTATSASRVQMILLPQP PE |
Secondary structure | LEEEEHHHHHHHHHHHHHHHHHHHHLLLEEELLLLLLLLLLLLLEELHHHHHEEEELLLL LL |
PRMN | LLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LL |
PiMo | i??????????????????????????????????????????????????????????? ?? |