NONHSAT055825

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT055825

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1984 nt

Genomic location

chr17-:72849656..72856964

Exon number

2

Exons

72849656..72851246,72856572..72856964

Genome context

Sequence
000001 GAGTCCCGCT TCTTCCCCTT CCAGCTCTGC CCCATCTCCT TTGCCCCAGC CTAGCTCTCT CCTTCCTGCG ACCTGGGAGA 000080
000081 ATCGGAGTGG GCTTCCAGAG TAGTGGCATC TTGCAGATGC TGGCCCGTGC CCGGCTCCCG GGCTTCCAGA GCGCAAAGGG 000160
000161 AAGGGTAGGC AGAGAGGGCA CTGGGCGAGC AAGACCTGGC GCTGGGCCCT GGCTGCGCAC CAGCCGCCTG CGCCGGTCTC 000240
000241 TGGGGGCTTC GCCCAGGATC CCCGACGGCG GGGAGGGGAA GCCCCGAGTC TCCTGTTTCC TGCCTACGCG GGCAGGGCGG 000320
000321 GGACACGCGG AGCAAAGGCA CCCGGCAACC TGAACCCCCA GGTGCGTCCC GCGACCCTGC AAGGAGCTGC TGGGACCCTC 000400
000401 CGGTGGACAT GGGTGGGGCC CTGGGGCCGG CCCTGTTGCT CACCTCGCTC TTCGGTGCCT GGGCAGGGCT GGGTCCGGGG 000480
000481 CAGGGCGAGC AGGGCATGAC GGTGGCTGTG GTGTTTAGCA GCTCAGGGCC GCCCCAGGCC CAGTTCCGTG CCCGCCTCAC 000560
000561 CCCCCAGAGC TTCCTGGACC TACCCCTGGA GATCCAGCCG CTCACAGTTG GGGTCAACAC CACCAACCCC AGCAGCCTCC 000640
000641 TCACCCAGAT CTGCGGCCTC CTGGGTGCTG CCCACGTCCA CGGCATTGTC TTTGAGGACA ACGTGGACAC CGAGGCGGTG 000720
000721 GCCCAGATCC TTGACTTCAT CTCCTCCCAG ACCCATGTGC CCATCCTCAG CATCAGCGGA GGCTCTGCTG TGGTCCTCAC 000800
000801 CCCCAAGGTG CATGTCCAAA CTCATGTCCC CTCGTGCCTC AGGCCTGGAA CCAGGCTGGG GTCGGGGGTG CTTTGGTTCT 000880
000881 GGGAAGCTGG GATTAGACGG GATGGGCAGG GAGGTGGGGG CTGAGGGCAT GATGTGGGTG ATGGGGAGAT GGTTATGGGA 000960
000961 ATGACATCCC ATGTTCTAGA GGAGAGATAT TCTGGGCTGA CCTCACATTG TGTCTGGATG AGGGGTGGGC AGGGTGCAGG 001040
001041 CCCACCCTCT GGCTGTGGGG CTCAGGCCCC AGCCCTCCTC CTCTCTGCTT CCCTCAGCTT CCTAGGTCAG GGTGAAGACC 001120
001121 CAGAGGGCCA GCCGGGCATG GAGGTGGTGC CATGCCCTCT GGGCAGTGGT AGTTGACCTG TAGGGTGAGC ACCAGGGAAC 001200
001201 CCTGGGAGCC CTGGGGGAGG Cagaaacggc cctgcccttg cagggctcag gggagaacgt tccaaacaca cattcatcag 001280
001281 cagttacaac taggacaagc gttctgaagg aaagacacag gatgctgtga gggagctcac tcatggctca tgcatagggt 001360
001361 gttggccagg gaaagtctct ggagaaatga tgtctaggct gagggcctaa gggcgagccg gtggggaggg ggagaggccc 001440
001441 aggcagagaa gcaggtggga tgaaggtccc aaggcgagga aggagctcag agctttggag gaatagaggg aAAAGCCTGG 001520
001521 AGAAGGAGGC GGGGGCCTGG CCACCTGGGA AGACATTTGG GCTTTTCCCT AAGCAAGTGA GCAGACAGGG CAGCGCAAGC 001600
001601 CGGCTGTGAC AGTGGCCGTG GTCTGTGCCT GCCTTAGCCC TGTGAGCTTC CTGGCCCTGC CCCTGTTGAT CTAGCCACTC 001680
001681 AGGGAAGAGC GGAGGAGAGT TGAGGGAAGA GACTGATCTG ATTCGCCTTT GTTTCATTAA TTTTTATATG AAGAATTTTG 001760
001761 AGTATACATT AAAAAGTATA AGGAAGACTC ATATATCCCC CATTCGCCCT GGCCATCCAC CCCAGCCTCA CCAGcacccc 001840
001841 cttccccttc ttctgtgtta atttgaatca aagcccaggc atcctcttat tccatccata aatatttcag tatgtatccc 001920
001921 tggcagataa gggcttaaga acgtaaaacc accatacatt atcacgtcta aaaaataata aaaa
[back to top]

Predicted Small Protein

Name NONHSAT055825_smProtein_116:352
Length 79
Molecular weight 8353.4651
Aromaticity 0.0384615384615
Instability index 49.0333333333
Isoelectric point 12.1777954102
Runs 7
Runs residual 0.0439337085679
Runs probability 0.0255759961643
Amino acid sequence MLARARLPGFQSAKGRVGREGTGRARPGAGPWLRTSRLRRSLGASPRIPDGGEGKPRVSC
FLPTRAGRGHAEQRHPAT
Secondary structure LLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLEEEE
ELLLLLLLLLLLLLLLLL
PRMN -
PiMo -