NONHSAT055825
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT055825 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1984 nt |
Genomic location |
chr17-:72849656..72856964 |
Exon number |
2 |
Exons |
72849656..72851246,72856572..72856964 |
Genome context |
|
Sequence |
000001 GAGTCCCGCT TCTTCCCCTT CCAGCTCTGC CCCATCTCCT TTGCCCCAGC CTAGCTCTCT CCTTCCTGCG ACCTGGGAGA 000080
000081 ATCGGAGTGG GCTTCCAGAG TAGTGGCATC TTGCAGATGC TGGCCCGTGC CCGGCTCCCG GGCTTCCAGA GCGCAAAGGG 000160 000161 AAGGGTAGGC AGAGAGGGCA CTGGGCGAGC AAGACCTGGC GCTGGGCCCT GGCTGCGCAC CAGCCGCCTG CGCCGGTCTC 000240 000241 TGGGGGCTTC GCCCAGGATC CCCGACGGCG GGGAGGGGAA GCCCCGAGTC TCCTGTTTCC TGCCTACGCG GGCAGGGCGG 000320 000321 GGACACGCGG AGCAAAGGCA CCCGGCAACC TGAACCCCCA GGTGCGTCCC GCGACCCTGC AAGGAGCTGC TGGGACCCTC 000400 000401 CGGTGGACAT GGGTGGGGCC CTGGGGCCGG CCCTGTTGCT CACCTCGCTC TTCGGTGCCT GGGCAGGGCT GGGTCCGGGG 000480 000481 CAGGGCGAGC AGGGCATGAC GGTGGCTGTG GTGTTTAGCA GCTCAGGGCC GCCCCAGGCC CAGTTCCGTG CCCGCCTCAC 000560 000561 CCCCCAGAGC TTCCTGGACC TACCCCTGGA GATCCAGCCG CTCACAGTTG GGGTCAACAC CACCAACCCC AGCAGCCTCC 000640 000641 TCACCCAGAT CTGCGGCCTC CTGGGTGCTG CCCACGTCCA CGGCATTGTC TTTGAGGACA ACGTGGACAC CGAGGCGGTG 000720 000721 GCCCAGATCC TTGACTTCAT CTCCTCCCAG ACCCATGTGC CCATCCTCAG CATCAGCGGA GGCTCTGCTG TGGTCCTCAC 000800 000801 CCCCAAGGTG CATGTCCAAA CTCATGTCCC CTCGTGCCTC AGGCCTGGAA CCAGGCTGGG GTCGGGGGTG CTTTGGTTCT 000880 000881 GGGAAGCTGG GATTAGACGG GATGGGCAGG GAGGTGGGGG CTGAGGGCAT GATGTGGGTG ATGGGGAGAT GGTTATGGGA 000960 000961 ATGACATCCC ATGTTCTAGA GGAGAGATAT TCTGGGCTGA CCTCACATTG TGTCTGGATG AGGGGTGGGC AGGGTGCAGG 001040 001041 CCCACCCTCT GGCTGTGGGG CTCAGGCCCC AGCCCTCCTC CTCTCTGCTT CCCTCAGCTT CCTAGGTCAG GGTGAAGACC 001120 001121 CAGAGGGCCA GCCGGGCATG GAGGTGGTGC CATGCCCTCT GGGCAGTGGT AGTTGACCTG TAGGGTGAGC ACCAGGGAAC 001200 001201 CCTGGGAGCC CTGGGGGAGG Cagaaacggc cctgcccttg cagggctcag gggagaacgt tccaaacaca cattcatcag 001280 001281 cagttacaac taggacaagc gttctgaagg aaagacacag gatgctgtga gggagctcac tcatggctca tgcatagggt 001360 001361 gttggccagg gaaagtctct ggagaaatga tgtctaggct gagggcctaa gggcgagccg gtggggaggg ggagaggccc 001440 001441 aggcagagaa gcaggtggga tgaaggtccc aaggcgagga aggagctcag agctttggag gaatagaggg aAAAGCCTGG 001520 001521 AGAAGGAGGC GGGGGCCTGG CCACCTGGGA AGACATTTGG GCTTTTCCCT AAGCAAGTGA GCAGACAGGG CAGCGCAAGC 001600 001601 CGGCTGTGAC AGTGGCCGTG GTCTGTGCCT GCCTTAGCCC TGTGAGCTTC CTGGCCCTGC CCCTGTTGAT CTAGCCACTC 001680 001681 AGGGAAGAGC GGAGGAGAGT TGAGGGAAGA GACTGATCTG ATTCGCCTTT GTTTCATTAA TTTTTATATG AAGAATTTTG 001760 001761 AGTATACATT AAAAAGTATA AGGAAGACTC ATATATCCCC CATTCGCCCT GGCCATCCAC CCCAGCCTCA CCAGcacccc 001840 001841 cttccccttc ttctgtgtta atttgaatca aagcccaggc atcctcttat tccatccata aatatttcag tatgtatccc 001920 001921 tggcagataa gggcttaaga acgtaaaacc accatacatt atcacgtcta aaaaataata aaaa |
Predicted Small Protein
Name | NONHSAT055825_smProtein_116:352 |
Length | 79 |
Molecular weight | 8353.4651 |
Aromaticity | 0.0384615384615 |
Instability index | 49.0333333333 |
Isoelectric point | 12.1777954102 |
Runs | 7 |
Runs residual | 0.0439337085679 |
Runs probability | 0.0255759961643 |
Amino acid sequence | MLARARLPGFQSAKGRVGREGTGRARPGAGPWLRTSRLRRSLGASPRIPDGGEGKPRVSC FLPTRAGRGHAEQRHPAT |
Secondary structure | LLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLEEEE ELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |