NONHSAT055781

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT055781

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

5657 nt

Genomic location

chr17-:72296761..72305929

Exon number

4

Exons

72296761..72298009,72298210..72298376,72299778..72303477,72305408..72305929

Genome context

Sequence
000001 GGTGGTTCCC CAATGCCCCC ACCCTTCCGT GGCCCCAGCC AGTGGGGCTC AGCTCTGGCC ACCCTGACAT GAAGGGGAAG 000080
000081 GTCCAGCAGC CAAACCCCAG GGGCTCTGAA GGAATCGGCC TGTGGGTAGG AGATGCCGGG TACCTGCTTT TGTTTCTTTT 000160
000161 TAAATTTCCC CCAGGTGATT CTGTTGTGCT ACCAGGATGC CAAATCCCCC AGGCCCCTTA ACCTTTGTAG GAGCACACGC 000240
000241 TCGAAAGCAA TCGCTGCAGT CAGCCTGCAC ACGGCTCCCC CACAGAGGCC CAAACACACC TGGCCACACA CTGCACACGT 000320
000321 GCTCACAGCA CCCCACACTC ACACCCACGC CGGGACCTGG CTCCCTGAGG ACCTGGATGC ACAAGGAGGG ACATGCACGT 000400
000401 GACCTTCAAG CTGAGGGTGG GATCGCACTG CTCGAACATG AAGTCCCAGA TATCCAGGGT TCCGTCCATC CTGGTGGTAA 000480
000481 AGAAAACGGT CGGCCTCACG GGGCTCCAGG CAGCATCAGT GAGGAGGAGG ACAAGGGAGA CCCAGGTTCT ATGACACAGG 000560
000561 TCCACCAAGT CCCTCTAGGA ACCAGCCCTG CGAAAGGCCT ATGGGTGCTG TGCTCGACAC CCTGCTCCTT TCACACAGCC 000640
000641 CTGGCAGCCT GCAGGACCTG AAGACATTGG GAAGGCTCCT AAAGCCTGTA AAGGGCTTCA CATCTACTGG GAACCCCCTA 000720
000721 CTTGCTATGA GGCCTGGAAC AATGCACTGC CCTTGTCAGC CAGCGTTCCC ACCCCTGTAG AATGAGGACA TCGAACCAGG 000800
000801 TTTCTGCTCC CAAAGCAAGG ACTGGCTGAG TCACAAGCCT GGGGTTGCTC CTTAGCAAAC CCATTCCTGG GCTAAGCCCA 000880
000881 AGATTCTATG TTAGTACCCC CAGGGTTGGG GCTGAGAATC TGGATTTTAA AAAAATCACT CCTCCACCAG GCACGGTGGC 000960
000961 TCATGCCTGT AATCCCAGCC CTTCGGGAGG CTGAGGCAGG CGAATCACCT GAGGTCAGGA GTTTGAGACC AGCCTGGCCA 001040
001041 ACATGGGGAA ACTCTGTCTG TACTAAAAAT ACAAAAATTA GCTGGGTGTG CTGGCGTGCG CCTGTAATCC CAGCTACTCA 001120
001121 GGAGGATAAG GCAGGAGAAT CGCATGAACT CGGGAGGCGG AGGTTGCAGT GAGCCGAGAT CGCGCCATTG CACTTCAGCC 001200
001201 TGGGTGACAG AGTAAGACTC CATCTCAAAA GCATTTTAAC AAACAAACAA AAACTCCTCC CAAGATATTC TGATGCAACC 001280
001281 AGATTTGGGA AGCACTGGAA CCAAAGATGC TCATTAGGGT TGCTGGTGGC TTTGACGTTG CAGGAGTCTG TGGTTCTGTG 001360
001361 GGCAGGAAAG GAACCCCAGG ATGTTTTTTT TAGCAAGAGA AAAAAGTAAT TATTTATACA TGCAATGCAC AATACACATG 001440
001441 GCAGTGCTCG GTGGTGAATG ACTCAAGGGG GTGGTTAGAA TTCGGGCTTA TTACCTAATT TAGGAGATGA AGGGGAGGAG 001520
001521 GAGAAAGGGC ACTTTTAGAC AAGGTAAATG GGCCCTAAGA AGAATGGAGG GGGATGTGAT AGTCCAAGCT TCTCTGGTCT 001600
001601 AACCATTGTG CTCATAGCTC TGTCTCAAGC TCCCTGTCTG TTGCTCTCCT CAGAGGAGTG GCACTGAGCA AGACAGGCTA 001680
001681 TGCCTCACTG CTGAATCGTG CCAAGGCACC CGCATTTCCC AGCCAAGCTT CCTGGGTTCA CACCCAATCT CGGCTCCTCA 001760
001761 CTAGCTGGGA GAGCAGGAGC AAGTGGCTTG GCCTTTCTGT AGCCCAGTTC CCTAACATGA AAAATGAGAT GAAGAGAAGA 001840
001841 GCAATGCTGC CTCCTCCTGG GGATAGTTTG AGGATTATGA AAATTAAGCC AGCCAGACGC GGTGGCTCAC ACCTGTAATC 001920
001921 CCAACGCTTT GGGAGGCCGA GGTGGGCGGA TCACCTGAGG TCAGGAGTTC AAGACCAGCC TGGCCAACGT GGCAAAATCC 002000
002001 CATCTCTACT AAAAATACAA AAATTAGTTG GGCATGGTGG CAGGTGCTTG TAGTCCCAGC TACTCAGGAG GCTGAGGCAG 002080
002081 GAGAGTCTCT TGAACCTGGG AGGTGGAGGC TGCAGTGAGC CGAGATCACG CCACTGCACT CAGTCTGGGG AACTAAGCGA 002160
002161 GACTGTCTCA AAAAAAAAAA AAAAAAAAAA AAGGAAATAA AATTAAGCCA TGGCCATTAT TTTTAGTAAC TGAGTGTTTG 002240
002241 AAGCTTATCA CTTTGTGGAG TGGCTGGAGC AAGTCACTTG CTAACACGAG CTTGGGTGTT TGTGGAAAGG TTTTTCTCCA 002320
002321 TTTTACATAT GGAGGCTCGG GACTCTCCGG GGCCCAGCTG GGCTCCCTCC ATCCCCTCCT GTCTCCTGCA TCCCCTCCTG 002400
002401 TCCCCAGCAT CGCCTCTTAC TTGGTCCACA TGATGGACGA TTCCCGGCTG TCTTCAGACC AAATGCGGGC TGTCCAGTCG 002480
002481 CCAACCGTCA GGAAGTTCTT CGGGTAGAAG GGGTTTCTCT GGAGGGCGTA GATGGGGCCA TGATGGCCCG GGAAGGTGCA 002560
002561 CACAATCTTC TCAGCTGACG TCTTGGCCTT GCGGTTGCAG GAGATGACGA TGCCCTGCTC GGTCCCCACC ATGAACTTGG 002640
002641 TGGGCTGTGG AAGGAGTGAC ACAGGAGGGG AAGACTCCAC GAACCATCAA TTCTGGGATT AGCGGGCATG GACAGGAGCT 002720
002721 TGCTTGGGGG GTCTGCAGGC GCTAGAAAGG CCCTCAGATC AAGCCTTGGC AAGGGCTGTG GCCCCTCCTG GAGAGCAGTC 002800
002801 CCCACTCTTC CCGGGCTCCT CAGACCCCAT CTTTTTGGAA GCTGCTCAAG GAGCCTGTGT TGAATGAAGC CCTCCCTGGC 002880
002881 TCCTCCAGTC CTGGAGGGTT GTCAGGTCAC TAGCCCCCTC TGCAGAGCAC CACTGTGTCC TCGATGCATT TGGCCATAAA 002960
002961 GATCCTGAAT GTTTGTTTAC AGAGAGAGTA AAGAAGACCC AGGGAGGGGA CGCAGGGTGG CCCACCCAGA TCACTCATGG 003040
003041 GATGGGCAGA GCCTTCCCTG GCAAGACAGT GACATTTGTC ATAGCATTGT CCAGGCTGGT GTCCCTGAGA ACTCAGAGCA 003120
003121 GGTGACCAAC CAGCACTCAG GAAGCTACCT GGCAGTCGAT GATGTAACTC GTCCCCCTAC CACTGGTGGG TGAGCTCTTT 003200
003201 GAGGGGCACG AGCTTGTCTG ACATGGGTCC ATCGCCCACG AACTGAGCTT TAGTAGTTAT TCACTTCACT GCGGACTGAA 003280
003281 TGCACAAAGG CTGGTCTCCT GACTCCTGGT CCAGTGCTCC CCTCGCGTCT CTGAGCATGA CCCCCTCCAT CACGCAATGC 003360
003361 CCTTCCTTGT TTACTGTTCT GTCTTAACTT CTGGGCTAGA CTGAACAACC TCCACCAGCA GGGCCTGAGC CTACAATGGT 003440
003441 GCTGTGTCCT CAGCATTCCA AATGGAAAGA ACAGCTGAGT GAGGTAGGGG AGGGGCACAC TGAGGGGAGG GCCTTTGTCA 003520
003521 ACGGGCTCAG ATGTCCTCTG CAGCTGGTGA ACCTGCCCCT ATAGAACTCC CAGGTTTTAG GCAGAGGTTG CAGTGAGCCG 003600
003601 AGATCATGCC ACTGCACTCC AGCCTGGCCT ACAGAGCAAG GCCCTACCTC AAAAAAAAAA AAAAAAAAAA AAAAAGAAAA 003680
003681 AAGAAAAAGA AAAAAGAAAA GAAAAGAAAA AAGAACTCCT AGTTTATTTA TTTATTTCTC GAGACAGGTT CTGGCTCCAT 003760
003761 TGCCCAGGCT GGAGTGCAGC GGTGCGATCT CAGCTCACTG CATCCTTGAC CTTCTGGGCT CAAGCAGTAC TCCCACCTCA 003840
003841 GCCTCCCACG TAGAGACCAC AAGCACACAC CACCAGGGTC AGCTAATTTT TGTATTTTTG TAGAGATGGA GTCTCCCTAT 003920
003921 GTTGTCCAGA CTGGTCTCAA ACTCCTAAGC TCAAGTGATC TGCACACATC GGCTTCCCAA AGTGCTGGGA TTACAGACCT 004000
004001 GAGCCACTGC ACCTGGCCCC CCAGCTTTTT TATTTTTATT TTTTTAAAAA ACATATTGTT TTATTATGCA GTTTTCTTCT 004080
004081 ACCAGAAAAT TACTAAAATG ATAAATATAA AATCTCTAGA AAATACCCAG AACATGGCCA GGTGTGGTGG TTGAGGCACG 004160
004161 AGAATCACTT GAACCTGGGA GGCAGAGGTT GCAGCGAGCC AAGATCATGT CACTGCACTC CAGGCTGGTC TTGAACTGCT 004240
004241 GGGCTCAAGT GATCCTGCCA CCTCAGCCTC CCAAAGTGCT GGGATTACAG GTGTGAGCCA CGGCGCCTTG CCTCACATTG 004320
004321 ATATTTTTCT TCTTTTTCTT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCTT 004400
004401 TCCTTCCTTC TTTCCTTTTC TTTCCCTCTC TCTCCCTCTC TTTCTTTCTT TCTTTCTTGG TAAAGACTGG GCGGGCGGTG 004480
004481 GGGGGGGTCT CATTATGTAC CCAGGCTGGT CTTAAATTCT TGGCCTCCCA AAGTGCTGGG ATTACAGGCG TGAGCCACCC 004560
004561 TGCCCGACCT GAACTTTGAT ATTTCTTTGT CATTCTCAGT GACTGAACAC CGAGACCATG CTTGTGCTCT GGTTTTCCAA 004640
004641 GGAGCCTGCT TTGACCTCAT TTTCCTCTCC AGTACCTCTT CCTTCCCCAG AGGAAGGCAG GTGACCAGCC TAGGGACCCC 004720
004721 GTGCCAGGCA GGGCCAGGAC CTGGGTTGGA GTCCAGGCCT CCCGATGTTG GTCCTGGGCG TGACCTTCCC CACAAAACAG 004800
004801 GGCTTTTCTG GAATTGTTCT GTCAAAAGAT TGCCCTCTGT GTTCAGCTGG GCCACTGGCC AAAAGATGAC TTGGTGCCAT 004880
004881 GATGACTATG GTGTCCTTCT TCGAGAAGCT CTGCTGCCCC CTGCTGGAAA GTTGTTGTAA AGGCCACACA CGTCTAGGAT 004960
004961 GGCTGCAGTG AGGGTGGCCT CCCTGGGCTG GTGCTGGGTT CCACGAGCAC CTGATATCCT AGCAATGGCC TGTCTTTAGC 005040
005041 CCTGGCTGCC CTGTCAATGC AAGTCGGGGA AGGGACAGCA AGGGACACTC ACCAAAGTAG ATTCGAACTC CAGGGAGATG 005120
005121 GCCCCCAAGG CATTTTCCAA CTGTTCCTTC TTGGTGATGT CCAAGATCAC AACTTCAGTG GGCTCGCTCA TCTTTCGGAT 005200
005201 GTCCCACCAC ATGACCTGGC GGGAGGAGGG GCGACAGTGA GACTTCGAGG CCCTGTATTT CCCCTGGCTT TTGCCTTCTC 005280
005281 CGCCCTCACC CCACCATCCT GGGGTCAGCC ACTGGGCCAC AAAGGATGGA GCTCCCGGCA ATTCGTGGGA GCAAATACAC 005360
005361 TTTGAGGATT GCTGTTCTGT CCACAGTTCC CACACCTGGC TGATCATCAG AGTCGCCGGC AAGCTTCATA CAACCCAGAT 005440
005441 GCTGAGGCCT CGCCCTCGAC CTACTGAATC AAAACCTCCA GGTGCAAGGC CAAGAATCGG TATATGCCAA GACTCCCCAC 005520
005521 AATAAGGCAA TATCCGGCAA TGTTAAAAAT GCATGTGTGC TCCGACCTAG AAGTCCCACT GCCAGCAATG TCTGCTGTAG 005600
005601 ATATATCCCC GCATGTGTGC AACAATCTGT GTATAAAGAA AAAAAAAAAA AAAAAAA
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Predicted Small Protein

Name NONHSAT055781_smProtein_887:1171
Length 95
Molecular weight 10673.3969
Aromaticity 0.063829787234
Instability index 78.5063829787
Isoelectric point 10.1738891602
Runs 12
Runs residual 0.00115633672525
Runs probability 0.0452364128834
Amino acid sequence MLVPPGLGLRIWILKKSLLHQARWLMPVIPALREAEAGESPEVRSLRPAWPTWGNSVCTK
NTKISWVCWRAPVIPATQEDKAGESHELGRRRLQ
Secondary structure LLLLLLLLEEEHHHHHHHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLEELL
LLEEEEEEELLLLLLLLLLLLLLLLHHHLLLLLL
PRMN -
PiMo -