NONHSAT054547
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054547 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
932 nt |
Genomic location |
chr17-:47677671..47679760 |
Exon number |
2 |
Exons |
47677671..47677884,47679043..47679760 |
Genome context |
|
Sequence |
000001 CAGACCATTG AGTTGCCCTG TTGACGTGAA GCAGACTGAT GCCTCACTGT AATTGTAAGT GGTGAAGGTT TAAGAACAAC 000080
000081 TTTCATCACA GTCAGGAGGA GAGTAAACTT CAGGATGCAG ATCTACCCTG TAATTGCCAT TTTTCTAATA GGTAGACTTT 000160 000161 AGAACTCTAA TGGCAGCTTT CCAAGTTACT TTAGCTGTTT ACATTTCAAG CTTAAACATC TAACCTTCAG AAATGGTTAT 000240 000241 GTTTTATCAT TGCAGTAGTA GCTTTTCATG GTCTGTGCAG TTCTATTCAA GTATCTAGTT AATATGATGG TACAGCTAAA 000320 000321 GAAAACAGCT TCAGTAGTGG TCAGCCCAGA ACTATTGCTG CTCTGATGAC AGCAGTGCTT GTGTTTTACA GTATGCCCTG 000400 000401 GAGCGCTTAA AGGTCATGTG TGAGGATGCC CTCTGCAGTA ACCTGTCCGT GGAGAACGCT GCAGAAATTC TCATCCTGGC 000480 000481 CGACCTCCAC AGTGCAGATC AGTTGAAAAC TCAGGCAGTG GATTTCATCA ACTAGTGAGT TGGCATCTTC AAAGTTCTTC 000560 000561 TTTCAAAATA GTTGGATAGC TGAAGAAATG AGAAAGGCTT TGAATTAGTG GGTAAAGCAG GCAAGTAGCT TCATTAACCT 000640 000641 TTTGGCAGTA AGAATAGAGT TTTCATCTTT TCCTTCAGTT GACCGTATGG AATTGACTTC ATGGGTTGAA TCCTATTGTC 000720 000721 ATGCTTCGGA TGTCTTGGAG ACCTCTGGGT GGAAGTCAAT GGTGGTGTCA CATCCCCACT TGGTGGCTGA GGCATACCGC 000800 000801 TCTCTGGCTT CAGCACAGTG CCCTTTTCTG GGACCCCCAC GCAAACGCCT GAAGCAATCC TAAGATCCTG CTTGTTGTAA 000880 000881 GACTCCGTTT AATTTCCAGA AGCAGCAGCC ACTGTTGCTG CCACTGACCA CC |
Predicted Small Protein
Name | NONHSAT054547_smProtein_686:862 |
Length | 59 |
Molecular weight | 6503.3838 |
Aromaticity | 0.0862068965517 |
Instability index | 46.7672413793 |
Isoelectric point | 7.84710693359 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0466268407445 |
Amino acid sequence | MELTSWVESYCHASDVLETSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS |
Secondary structure | LLLHHHHHHHHLLLLLEELLLLEEEEEELHHHHHHHHHHHHHLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |