NONHSAT054260
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054260 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1090 nt |
Genomic location |
chr17-:45130882..45144877 |
Exon number |
3 |
Exons |
45130882..45131579,45133826..45134119,45144780..45144877 |
Genome context |
|
Sequence |
000001 ggggaggggg ccaggcagcc gttagacagc acaaccgaac ccaacaccgg ggcccaacgg caggggcttg ggcaggagca 000080
000081 aggtccgagg gctgccaggt ccacgctgct tttatgagct gtaacactca ccgcgaagat ctgcagcttc actcctgagc 000160 000161 ccagcgagac cacgagccca ccgggaggaa caaacaactc cagacgcgct gccttaagag ctgtaacact tgccgtgaag 000240 000241 gtctgcagct tcactcctga gccagcgaga ccacgaaccc accagaagga agaaactccg aacacatctc aacatcagaa 000320 000321 cggacagact ccagacgcac caccttaaga gctgtaacac tcaccgcgag gttccgcggc ttcattcttg aaCAATGAAT 000400 000401 CCTCCAATGT ACCTGACTCT CCCTTTGCGA AGAGCATCTC CGTGGCAGAA ATCTGAAAAT GCCCCTGGGG AGACACATGC 000480 000481 ACAAGACAGT GAGTGATGCA GCCGTTTCCC ACGTATCTCA CAATGTACTT CTCTGGTCTT ATTAGAACTA AATGAGTATC 000560 000561 TCAGTCCATA ATCACAGGGA GAAGAACCAC CACAGACCAC ATACCTGGGG TCTTGAAAAT AATTCCATGC ATGTGGGACT 000640 000641 TTCAGAAGCT CTCCATGTCT GTCCAGAAGG GCCCCACAAT ATACTGGGGG GACTTTGTAT GTggctcagc atggagcagg 000720 000721 ggcaggatgt tcattcccac tcatcccctt ggccaagtgc ccttgtgcag tgaacaaact gcacaaccat gctgggcagA 000800 000801 AGCATTTTAT ATCAGTCCCC TTCGGACTTA GTCTCACAGG CATCATTTGA TGGGGGGTGG GAGATGAAGT GGTTCTTCCT 000880 000881 TTTCTAGATA CTTTATTCTA TAAGTTGGAT CACCTCAAGC AAATGCCTGA GTGCAGCTAG CCAAGTTCTC TATCTCACAG 000960 000961 TCTTCATACA GCTGGCTGTC GCTGATGAGT GAGTGAGCTG CGAAATCAGC TTAAACCACA ACATGTTATT TTTGAATTTG 001040 001041 AATAAAATAG GAAAAGGCAG AGTGCATtgt gtgaccatgg ggtaagacac |
Predicted Small Protein
Name | NONHSAT054260_smProtein_551:772 |
Length | 74 |
Molecular weight | 8204.1221 |
Aromaticity | 0.041095890411 |
Instability index | 67.5191780822 |
Isoelectric point | 6.32611083984 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0446516034751 |
Amino acid sequence | MSISVHNHREKNHHRPHTWGLENNSMHVGLSEALHVCPEGPHNILGGLCMWLSMEQGQDV HSHSSPWPSALVQ |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLEEELLLLLEEELLLLLLLHHHHHHHHLLLLLLLLE ELLLLLLLLLLLL |
PRMN | - |
PiMo | - |