NONHSAT054174
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054174 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2022 nt |
Genomic location |
chr17+:43726626..43729225 |
Exon number |
2 |
Exons |
43726626..43728206,43728785..43729225 |
Genome context |
|
Sequence |
000001 CTAAAAGAAA GAAGACCCCA AGACCCCTGT ATGAAGCTTA GAAGGCAAAG GCCTGTCTTC ACAGAGCCAG CTaaagagct 000080
000081 aggctttggc gccaccacat cctgtttgga atccaagctc caccgtttag catttgtgtg accaggggct tgttaaggaa 000160 000161 ggccccaagg ctcccttccc tgcgtataaa aagaagagat ggtacctgct ttataggatg cagtggtgag ggttcaatga 000240 000241 gaagaggctt gcaataggct tggtatagtg cctggcacat ggggatattc aaatagtgct gactattaGA TCAGGAGCAG 000320 000321 ACATTGGGGT AGGAGGTATC AGCCCGGGGA GGAGACGACA AGGAGAGTTA GGGAGGGAAG GACGTGCCAG GGAAGAGACG 000400 000401 GTGGGCTCTG CAGAGGAAGG CTTCTTGGTA CCTCTCGAAA GCTGCTGTGG GAACACACCT TTACTCTGCT GACATTTTCA 000480 000481 GACAGCCGTG CTGGCAGGGA TCTGGGCACC TGGCAAAGCG AGCTGACCAT CTGGCCGGCT GTTTCTGCAA CAAAAAGAGA 000560 000561 TGGTGTCAAA GGTTTTGGGA GCTGGGCTCC TTTGACCCAC AGTTGGCACC GGAGGCCAAA TAAGTCCTCC TGGAGACCAT 000640 000641 CACCTTCTCA TCAGCAATCT TCCAGCCAGC ACACTGCAGC GGCCAGGGAG TGCAGGATTG TCTCCAGGAA GCCAGTGCCA 000720 000721 AGGCCAGAGG CCCAGAGCCT GCACTGAGCA AATCGCCAGG GAGTAGTGAC AGCCCTTCCT TCCTGGTCAG TGCTCTTGTC 000800 000801 CCATGGGGCT ACTATCTCCT CTGGATCCTA TGAAGACTGC TCCCTGCCAC GGCCATGATT ACGTGTCACA CTGCAtggtt 000880 000881 agaagggcag gttctgaggc caggctgcct gggttcatgc attagctgtg tggccttggg caagttactt agccacattt 000960 000961 tgcctcagtt ttctggacta caaaatggag ttgtgagagt tcaccaagtt catgcttata aggagatggc agcagtgcct 001040 001041 ggcatttaaa aagtgcccca caggtgttAT CTGGGGCTGT TGTCATCTCT GTGGCCAATT GTGCATCGGT TCCAGGTCTT 001120 001121 GGGGTCATGT CTGTGTGCTT GGTGCCCTAG GTGCCCCAAT ATCTAGTCTC TTTTTCTCCC ATTAAAAAAT CAATCTCACT 001200 001201 TCTCTGTCTC CCTATCTTTC TCCCTTTCAT CTTCCCTTTC TTAGCACAtt atttattcaa caaacacgga tgaagtgcct 001280 001281 gccctgtgcc aggcgctggg gagggggagg atggggggct acagagatgg aataaacagt gagccctgca caggaccctc 001360 001361 cgagtgccca cagctagGCA GAACAGCAGT TAGTCCATGC TGATGCAGGA TTCATCATCG TCACGGGGGA GCCAGAATCT 001440 001441 GGAGACACCC AGGCCCTGAA GACGGAGCCT GCCCAGCCCC CACCGAAAAG AGAGCTGCTA TTGGCCTCAG CGTCCAGGAA 001520 001521 GAGCCGGGTG ATTCAGCGGG ATGGAGATCC TCCTTCCCAA GACAAGATGG GGGCAGCAGA Ggaccgagca catagtggca 001600 001601 ctccgcaaat gcgtgctgag gaatggatTG TCATTACTGA TGTCATCATC CACCCCTGCA CAAGTCTTGA CACGGAGCAG 001680 001681 CCTCCCACCC CTGCTGGAAG CCTGGCTTAA AGTGACCAAC CTGCTTTAGT GAAGGGTTGG GGTTTGGAAG GCCCGCTGGA 001760 001761 TACAAGGATC TAGAATGAGG AGGTCTTTTC CTATTGAGGA CCAAAGCTCT CAACTCTTTT TTCCTAATAA ACTAGGAGAG 001840 001841 ACCAGTTTGG AATTGTCTCT AAATGTACAG GATGAGTTTG AGTTTAGGGG TAGCGGAGCC TCTTGTTCCC AACTGAAGGC 001920 001921 ACTCACGAAA CCTGAACTGC ACCCACTTGG AGGAAAGTGA GACGGGGCTT CCCAGTGAGA ACCCAGGGAG ATGCGTCAAA 002000 002001 GGCTACAGAG GGAACAAACA AA |
Predicted Small Protein
Name | NONHSAT054174_smProtein_854:1048 |
Length | 65 |
Molecular weight | 6840.0758 |
Aromaticity | 0.046875 |
Instability index | 49.7875 |
Isoelectric point | 8.49456787109 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0782458929517 |
Amino acid sequence | MITCHTAWLEGQVLRPGCLGSCISCVALGKLLSHILPQFSGLQNGVVRVHQVHAYKEMAA VPGI |
Secondary structure | LEEEELLLLLLLELLLLLLLHHHHHHHHHHHHHHHHLLLLLLLLLEEEEEEEEHHHHHHL LLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL LLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii iiii |