NONHSAT054173
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054173 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2546 nt |
Genomic location |
chr17+:43723037..43725582 |
Exon number |
1 |
Exons |
43723037..43725582 |
Genome context |
|
Sequence |
000001 tttacagtag gagtttgcaa tcacacagta aaggtcttgg atatatttag ttggagttaa gagcgttggg ctcccataaa 000080
000081 gcagtagggc tctccttgag tttagtttat atatatttag ttggagttaa gagtgttggg ctcccataaa gcggaagggt 000160 000161 tctccttgag tgctgcatca tctgtcttag atcccgattt ccccataatc atgtttatta tcctttccag gttgaagatt 000240 000241 attctctctt ctaaagaaaa tagaagaata ttaggagaaa agacacttga aaatgttcac tcttttattc acattacatc 000320 000321 atctgtcttg aataatgggt ctatctcttt cctgttgctc tggccctgaa aaaaaaatta gctttttaag gctgcttttg 000400 000401 ttacgtgtgc attttcttgt aatcccgtca ttctgggatt taATAATAAT AGTATtaata ccacctacca tttgttggtt 000480 000481 acttactgtg ttttaggcac tgtgctaaac gccttccatg tattcatctc attAGTAAAC ATTTCTGAAA CTATTCTTAC 000560 000561 AATTTGTCTT TTAGTTTTTC TTGTTCTTGT CCTCTTAAAA TCTGAGCTTA GCCATGAGCT CTCAGTGAAG CTGCTTGTAT 000640 000641 TTCTTTAAAA ACCCTCTTTG CTTCCTCCAA GTGGAGTGGG TTGTACTTCT GAGGTCAGGA CAAACTGGGC ACCGGAGGAG 000720 000721 TTCAGCCTTC CGAGGCTGCA GGAGGGGTGG GTCCCCTGAG GCGAGCAAGA TGATGTAAGG CCTTGACTTG GGGTAACAGA 000800 000801 CAGCCACAGA TGGGAAGAGA GAAGCCAACA TTTAACCACG GAAGGATGTG AAGGGCGGAG AGGTGGGTTG AGCACTGGGC 000880 000881 CCCGGGTGCG GGGAGTGGGA AAAGGTCCAA AGGTGAAACC TGGGAAGCCT GGGCTTGGGT CTGGAAGTGG AGAGAAGGAA 000960 000961 GTCGTTCCAG GGGGAGCTGT GAGCAATGTG AACCCATCAT TTCTGTTTTC ACCAGCGAGg gtgagaattg agtccacagg 001040 001041 agtggctccc tcctctgctt cctcgacctg cagagggcta agtggggcaa cgagcagggt aaaacttttc aagatgctct 001120 001121 gctcttagca gaatgagctg ttctgaccat ttcccaagag ccaaatttcc tcatcagtcc tgaatgttgc ctctgtgcta 001200 001201 tgatttgcgt taaaaaaAAG ATACAgtctc cccactgtgt tgtcaaatct gaaataaggg actgtgtttt tgcaaaattc 001280 001281 tcttccaagg ccaagcacag ggtcaatgtt cagcaaatat ttggtgagtt aatgaatGAA ATgaaagcac tctccttatg 001360 001361 ctccttggct gagtgatgtg gagaagagtt ccagaacaat ataatttagt ttctttctcc ttttAACCGA GCCTAGAAAT 001440 001441 TCTCCACAAG GCATATGCAA ATACCCCAGA CATGTATTTT TCCAGGCGTG TGTTTTATGT GCAAATACTC CTGCATATGT 001520 001521 ATGAttttat tttacttttt gagacaaggt tcattgtcca ggcattgtct aatgcaccag tgcattggtg ccatctcggc 001600 001601 tcactgcagg cttgactttc cgagctcagg tggtcctccc acctcagcct cccaagtagc tgggatgaca ggtgcacacc 001680 001681 accatgccca gctaattttt tgtattttta gtagaggtgg ggtttcacta tgttgtccag gctggtcttg aactcctggg 001760 001761 ctctagcaat ctgcccacct tggcctccta aagtgctggg attacaggca tgagcTTCTG CTCATATACG TTACTTGTTC 001840 001841 ATCTGACTGA AGACCCCAAA AGAGACCAGC ACCCCAAAga agcatgtatt tctctttgga accagaagca aacatccttc 001920 001921 tgtttgcttg ggatgcatgg gatgagcatg cagtaggtgt ttaataaata cttgttgact aattaGGGGG CATAAATATG 002000 002001 TAAAAGTGGT AAATTAGCAA GAAAGAGCTG CAGTGTAGAT AATCAAATAA CAAAGTTGTC TAGGACAAGA GAATCTATCT 002080 002081 CTGAGGGCTC TGTGTAGGAG GAGAGGTGGT GTTGGCTAGT GAGGCAGATC TGCCTTCTAA TTAGGCTCCA ATCAGGATAG 002160 002161 TATTGCAATT AGCTCGGGAT ATTATAGCAG TTAGCTTCTA TTCTTGGAAC AAATTCCTGG GAGATTTAAG TTGGGTGGTA 002240 002241 AAAGAAGGTT GTCCCAGGAA TAAATTTGCT GTGAACCGCT TTGGAGTGAC TACTTCATAT GTGCCTAATT GAACCGCCAA 002320 002321 TGTAAACCTG ATTGGATTGT TTCCTTCTTT ATCAGCGACA CTTAAACATG AGCTCAGGAA TTTGGACAGC CACTTAACAA 002400 002401 CAGAACACAG CTCGGGAAAT TGCAGATTTC AAATTTCAGA AAAGTCGATG AATTTAGACA ACTTGAGTGT CTTCTTTGTG 002480 002481 TTAGGGTAGA CAGGCTTTGG CCTCCAAGAT CTGGCTGACA AGTGCTTGCT GCTGAGACAG GCACTG |
Predicted Small Protein
Name | NONHSAT054173_smProtein_1454:1750 |
Length | 99 |
Molecular weight | 10646.5442 |
Aromaticity | 0.102040816327 |
Instability index | 50.1164285714 |
Isoelectric point | 8.56109619141 |
Runs | 16 |
Runs residual | 0.0242227732214 |
Runs probability | 0.0608991344286 |
Amino acid sequence | MQIPQTCIFPGVCFMCKYSCICMILFYFLRQGSLSRHCLMHQCIGAISAHCRLDFPSSGG PPTSASQVAGMTGAHHHAQLIFCIFSRGGVSLCCPGWS |
Secondary structure | LLLLLEEELLLEEEELLLHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHLLLLLLLLLL LLLLHHHHHHHLLHHHHHEEEEEEELLLLEEEELLLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |