NONHSAT054151
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054151 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4358 nt |
Genomic location |
chr17-:43657904..43662261 |
Exon number |
1 |
Exons |
43657904..43662261 |
Genome context |
|
Sequence |
000001 cgccgcTGCC GCTGCCCACG TCCGGACCCA TCCGGGGTTC CGCTCGCGGC AACGCGGTAG CAGCCCGGGC AGGTGGGTCG 000080
000081 CCGCCAGGCT GAGGTGGCGC CCAAGACGCG CCTGAGCTCG CCCAGGATGG GCAGCAGTAG CCGGAGAAAg ccgccgccgc 000160 000161 cggccccacc ccagcaccag cgccccggcc ggggggaggc gggggcAGCC ACCTGGCCCG GACGGCTGCG GTCTGGAGGG 000240 000241 CTGTCAACAA AGTGGTGTAG GAGGACGCCA GTTACTGCAC GGAAAGCAGC GTCAGGAGCC ATAGTACCTA CAGCAGCACT 000320 000321 CCAGGTACCC ACTCAGCCCA GTTGCTGCAG ACTCCTTCCC CACCTTCTCT GCCCTCCCCC TTTGCTCACT CGTGTGCTGT 000400 000401 GCATCCTGCT CCGATCTCCC CCCAACCCCG CCGACCCCCA GAGGGGAAAT GCGAGGGCAC ATCAAGTGGC AAAAAACCAG 000480 000481 ATTTATAGGA GGAAAGAGGC GCATTGTTCA AAATGGAGAT TGCATTGTTG CAGTTGGCGG GCCACACTCG CTCTCTCTTC 000560 000561 CCGCCTCCCG CCAACCTCCT CTTTTTCCTC CTCAGAATTT GTACCAGTGT AGTGTCTCCA CCGGGCAAGA TTGAAACTTG 000640 000641 GGCAAACACA TATCCATTGC TTTCATTTTT TCCCCTTGTT TTGGTAGTTT TCTGGAATGA AAGAAGCCTC TTGTTTTGCA 000720 000721 AACCTCTTTT CATTTCTAAT GTGGTTCCTT TCGGATTTTT ATTATATATC TGTTCCTTAA AAGGGAATTA AGGATTTGGA 000800 000801 CAGATTGTGT GCCACAATCT GTTTTCACAC CCCTAGCTGT GGTTTTAAAA TTATGTTAAG GAAACGGATC ATTTGGGTTA 000880 000881 GTAGGGGAAC CTTATCTGGT CTTGTGTGTT TGTTTTTATT CTTCGAGTGC TAACGGGCCC GTGCAACAGT TTCTGGTAAA 000960 000961 TGGCTGATTA AAAAGCAAAG CAGAAAGCCA AACAAGACCC AACGAAATTT GGTAATTCAT CTGATTCAAA ATTGTTTTGG 001040 001041 TTAAATCAAA AATTTACAAG ACCGCAGGAA CACGCGTCTT AACTCATTTG ATCGCTTTGC CTTGCTTGGG AAATGCAGGT 001120 001121 TCGTGTCACC TGTTGCAGAA GATGTGTAGT TGATCATCTA GGCATAAGTG CCTAAGATGA ACTTTTGGAC CAACTTCTAA 001200 001201 GTCACACAGC GTCAGTATCA GATTTATTAC ACAACGACTT ATTCTTTTCA CTCTATTTCT GAGGAAAAAG CCCTCCCGAA 001280 001281 ATCCGTAATG AATTTCTCCA TGGTAACCCC TCTTCTGTTT ACACACAGAA AAGTTTCTCT AGGCTGGTGC TGAGATGCAT 001360 001361 TTTGTTAAcc gccccgcccc gccccgcccc gcccAAAGGC TGCTTTGTAT TAAATACGTA GTTGCAGTGT ACTAAATTGT 001440 001441 GAAATTAACA TAACCGAAGC AACAACCGGC AAGACTTGTC CTTTATAATT TTGCAAATCT AAATTAATTA AATTAGAATC 001520 001521 TGGTTTTAAA ATCATTTTTA AAATAAAGTT TATGAGGAAG TATTTGTGAG GAAAAAGGAC CCTTTTTTCC TTGAAGTGAG 001600 001601 GTGTGTCCTG TCTTTCTCAG AGAGACTAGG GTAGTAGAAG TGGTTAAATT GAAAAGTTTC TGTTTTTTAA TAAATGCTTA 001680 001681 AATACTTATT GGAGAAGTAG GGTAGTATTA TATTAAGCCA AATGTAAACC CACGTAGGTT GTCCTAACAT AAACTGAAAA 001760 001761 AAGGTAATTT CTTTTGCCCG ATGGTCAGAA TCCTCGCCAG ACTTGCCCTG GGAGGCTGGC TGGAGAATGA AGGGAATGAA 001840 001841 TCAAATGTCA GATATTTATG TCTTATATGT AAAAAGGAGT ACATGTAAAT TCTTGCCAAC TTAATTTTAG TGCttttttt 001920 001921 ttttttttta aaggagtctt gctctgtcgc ctaggctgga gtgcaatggc gcaatcttgg ctcactgcaa ccttcacctc 002000 002001 ccggactcaa gtgattctcc tgcctcaggc tccccagcag ctgggattac aggcgcccac cagcacgcct ggctaatgtt 002080 002081 tgtattttta gtagagatgg ggtttcacca tgttggccag gctggtctcg aactcctgac ctcatgatcc gcccacctca 002160 002161 gcttcccaaa gtgctgggac taaaggcgtg agccaccgtg cctggGCTAG TACATCTTTT ATAGTAATAA TTTTTACCTT 002240 002241 AAGAAATCAC ATGTTGGTCT TTGTACCCAG AGCCGGTAAT TGAAAcatgg agactggatt gcatacaccc ctggaggaag 002320 002321 ttttttctgg ttagacagag ctgagacatt ttggcagggc agtTCAGCTA ACTTTAAGTC GTATTTGAAG GCCTAGCAAA 002400 002401 TAATATTTAG GATTGATGGC TGTGCATATG CTGACTTAAA TTACAATTTG TAGCTAGGTG TTCTTTAAAA AAATGTGTTT 002480 002481 ACTTTTGATA CTTTTGTGAC Attttgtttt tctttttttg agaaggagtt ttgcttttgg tgcccaggct ggagtgcaat 002560 002561 ggtagaatct cgatcttggc tcaatgcaac ctctgcctcc caagttcaag caattctcct gcctcagcct cccaagtagc 002640 002641 tgagattaca ggcatgcacc accacgcctg gctaattttg tatttttagt agagacgggg tttctccacg ttggtcaggc 002720 002721 tggtctcaaa ctcccgacct caggcgatcc gtctgcctca gcctaccaag gtgctgggcc tacaagcgtg agccaccatg 002800 002801 cctggccTGA GATTTTGTTT TTCTTAATGA CACCTGTAGC CTactgtgtg tctacttgtc ctatccttat atgaaattat 002880 002881 taactctgta gagataggta ttgagcgtat tccctctgca gctcctgtaa gtgttttgca catagcaagt gctcatcaaa 002960 002961 gattggttgg ataaatTATT GTTAGTAGAT GAGAACTTGT AGTACATGAA GTTTCGATAA TTCTACAGTG GGTGTCATAA 003040 003041 CCCCTAAATA TTTTGGATTT AGGAAACTAA AAATTGTCCT AATTGGTTTT TTGTTGTTGT TGTTCTTTTC TAATTGGATT 003120 003121 TTGATGGACA ATTTGATCAG TGAATgtctc gctctgttgc ccagggagga gtgcaatggc acgcacgatc ttggctcacc 003200 003201 acaacctcca cctcccgggt tcaagcaatt ctcctgcctc agcctcctga gtagttggga ctacaggtgc acgctgccac 003280 003281 acccagctaa ttttttgtat tttagtagag atggggtttc accatgttgc ccacactgtt cttgaactcc tgaactcagg 003360 003361 caatccgccc gcctcagcct cccaaagtgc taggattaca ggcatgagcc acctggcctg gccCAGTGAA TGTTTTTCAT 003440 003441 TGCAAGAGTT ACTTTGTTTT TGAGTTGCTA TTTCATATTG CTTGCCAGGC GTTTTCCTTT ATTGGCTGTG ATGTTAATTT 003520 003521 GGATGTTTTA CCTTTTGCAA AGCATTATTT CTTAAGATTA TGGTAAAATG GATGTGACTT ttttttttcc ttatttcttc 003600 003601 taaaaacaaa atggagtaca tgtgcagaac gtgcaggttt gttgcatagg tatacgtgtg ccatggtgga ttgctgcacc 003680 003681 tattgaccca ctctttaagt tccctcccct cgccccccac cccccGGATG TGAGTGACAT TTTGAGTTCC AAACTTTTAG 003760 003761 AACATGCCCA CTTGCCTCGA ATGAGTAACA ACGCGTGACA GTGAGTTGTT TAGGCTAAGT ACTAGTTTCA TTGGTTTTAT 003840 003841 AGTCTGTACT TCCTGGGTGG AAGGCTGTCA GGTAAATGTG TAGATGGAAG AAAAAAATTT TAGAACTGGT TTAAGATATC 003920 003921 TGAATAACAC ACAAAGAAGT ATGATTGATG AATTTGAATC CTGTTGTACT GCAAAGGCTG AAAGAGGAAT TTACTTTATT 004000 004001 GGTAATTTAG AGTAATTTGA TTAATTTTTA TAGTTTACAG CGTTGGCTTA ATTACTGACA TGTGACATTC CTAACATAAG 004080 004081 AAATAACTCC TAATATAAGA AATAACTCAG TATTTTGTAG GTTATATAAC AATGCAGAGG CATTAATTGA TATTACTAAA 004160 004161 GTCATGAAAG GTTTATTTAT TGAAGATTGT TTTCCTTTTA TGGAAAAAAT GTAAGGATGA CAACTTTTTA GTATAAAATT 004240 004241 GCAACCACCT AGTTTTGCTT TAGCCGAAAG CATATGGCTG AATAATGCtt taatttattt ttacttttta aatttaGAAT 004320 004321 TACTTCAGCC TATAGATTTT ATGACATTGC CGATATAA |
Predicted Small Protein
Name | NONHSAT054151_smProtein_512:790 |
Length | 93 |
Molecular weight | 10402.3938 |
Aromaticity | 0.152173913043 |
Instability index | 49.2565217391 |
Isoelectric point | 9.01959228516 |
Runs | 14 |
Runs residual | 0.0169690334689 |
Runs probability | 0.0797309914958 |
Amino acid sequence | MEIALLQLAGHTRSLFPPPANLLFFLLRICTSVVSPPGKIETWANTYPLLSFFPLVLVVF WNERSLLFCKPLFISNVVPFGFLLYICSLKGN |
Secondary structure | LHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHEELLLLLEEEELLLLLLLLLLLEEEEEE ELLLLLLLLLLLEEEEELLLLLEEEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiTTTTTTTTTTTTT TTTTTooooTTTTTTTTTTTTTTTTTTiiiii |