NONHSAT053541
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053541 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS),antisense |
Length |
1516 nt |
Genomic location |
chr17-:38497224..38499531 |
Exon number |
3 |
Exons |
38497224..38497952,38498248..38498942,38499440..38499531 |
Genome context |
|
Sequence |
000001 GGCGGGGGGG CCTTCCCCCG GGAGCAGACA AACCCACACA GACAGGACCT TTACCCCACC CTCCAGCCTG CTGTGAAGCT 000080
000081 GTTGGATTCC AGGCAAGAGG TCCGAGCTGG GAAGTCCTGC GCGCCGCCCC CGTCACTCAG CCGGCGGCGC CATCCGAGCA 000160 000161 GAGCAGCTGG GGGAGAGGAG ACGTCCCCTC GCCCCGACTG GTGACCCGGG CAGGGGGCGC CCCCTGCCCT GAAGTCCCCG 000240 000241 CGTCTAAGTC CGCCGGCCGC TCCGCCAGTC CCGGTGAAAA GCAGGGAAGT TGTGTGTGCT GGGAGGGGGG GTCCGTCGGC 000320 000321 TCTCCCAGGG AAGCCTGGCG GGGCCCGGGA ACTCAGCGGC TTCACCTCGA GGGGACTCCC GTCTAGAGTC TCGTGGCGTC 000400 000401 CGAGGCAGAG TACAGCGGCT CCCCAAGTCC GCAGGCCGGG GGCGGGATCA GCGCGGGGCT GGGGGTCAAC GAGCACTTCC 000480 000481 TCCTCCCAGC CGGGGATCCG GGGCTTCTCC AGGGATTCTC CGTGGCGAGG ATTCCGGGTG GGGGTGGGGA TCCCGCGCGG 000560 000561 TTCCGCCCCC GCCAGGCCAG GGGCAGCTGG CGACTCGCTC GGTCTCTGGT GGTACGCGCC ACGGCCCCCC CACCCCAGCT 000640 000641 CTGCGCGCCC CCTCCCCTCC GGGCACCACC CCCTTTCCAC CGCCCCGCCC CGTCCAGGCA CCGCCCCTGG CTTAACCCAT 000720 000721 TCCCGGCGCG TCCGGCTGCA GCGGGAGAAA CGCAGGGAAC CGAGAGGGAG AGGCGGCATG TGGACAGGCC GGGCCTCATT 000800 000801 TGCCTAATGC AATGCGGCTG AACTCTCGCT GAACTCGCCT GGCGGCGCCT CACCTCCGAG TGACCCACCC ACCGCTGCCC 000880 000881 GTGACATcac ccgctcgcca gcccgcccgc ggggctcgcc cgccagcccc ctgcccggcc gAACCGGGCC ACCTCCCCCG 000960 000961 GAGACGCGGA GAGCGGCGGC AGGAGGCGTA GGGCCGGGTC GCGCGGGGCC AAGTGTTTGG CACCCGGGTG TGACATTGTG 001040 001041 CAGCTCGGAC GCTGTGTCGG AATGAGACAC CGGCTTGTGT CATTGTCTGT GACATCATGT GTGACTCCGG CCGCCGGAAC 001120 001121 CCGACGCGGC AGCGCGGGTG CTGTTGGCAC AAACACAGGC AGAGGGGGCC CTCCTCCCCA CGCTCTGCGT GCTTCCGGCG 001200 001201 AGCAAAGCCC CGCCCAAGGT GTCTCCTAGC TGGGGAACCA GTACCGGCCC CTGGTGCACT GTCCAGCTCT GGAGAGATAA 001280 001281 AAGGAAGAGC TGGTGCCTTC CAGTGGACTA CTTCATCCTA GAAGCCCTCG GGATGCACGT TTCACTGGAA GAAAGGCCTA 001360 001361 GCTTGGGTAG GTCCCTAGAA AGAGGGGATA CCCCTGGAGG AGGGGGTATC CTATTACCCC CACTCTCTAA AAGGAAGGAT 001440 001441 GGAAATGTAC ATGCTACCCA AGGACATTCT TCTAGAAGAA GCCTGgctct ttatatatgt tgtcatttta tcctca |
Predicted Small Protein
Name | NONHSAT053541_smProtein_1061:1228 |
Length | 56 |
Molecular weight | 5409.9934 |
Aromaticity | 0.0 |
Instability index | 46.6127272727 |
Isoelectric point | 12.0003051758 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0456633103691 |
Amino acid sequence | MRHRLVSLSVTSCVTPAAGTRRGSAGAVGTNTGRGGPPPHALRASGEQSPAQGVS |
Secondary structure | LEEEEEEEEEEEEELLLLLLLLLLLLEEELLLLLLLLLHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |