NONHSAT053541

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT053541

Source

NONCODE4.0

Same with

,

Classification

intronic(AS),antisense

Length

1516 nt

Genomic location

chr17-:38497224..38499531

Exon number

3

Exons

38497224..38497952,38498248..38498942,38499440..38499531

Genome context

Sequence
000001 GGCGGGGGGG CCTTCCCCCG GGAGCAGACA AACCCACACA GACAGGACCT TTACCCCACC CTCCAGCCTG CTGTGAAGCT 000080
000081 GTTGGATTCC AGGCAAGAGG TCCGAGCTGG GAAGTCCTGC GCGCCGCCCC CGTCACTCAG CCGGCGGCGC CATCCGAGCA 000160
000161 GAGCAGCTGG GGGAGAGGAG ACGTCCCCTC GCCCCGACTG GTGACCCGGG CAGGGGGCGC CCCCTGCCCT GAAGTCCCCG 000240
000241 CGTCTAAGTC CGCCGGCCGC TCCGCCAGTC CCGGTGAAAA GCAGGGAAGT TGTGTGTGCT GGGAGGGGGG GTCCGTCGGC 000320
000321 TCTCCCAGGG AAGCCTGGCG GGGCCCGGGA ACTCAGCGGC TTCACCTCGA GGGGACTCCC GTCTAGAGTC TCGTGGCGTC 000400
000401 CGAGGCAGAG TACAGCGGCT CCCCAAGTCC GCAGGCCGGG GGCGGGATCA GCGCGGGGCT GGGGGTCAAC GAGCACTTCC 000480
000481 TCCTCCCAGC CGGGGATCCG GGGCTTCTCC AGGGATTCTC CGTGGCGAGG ATTCCGGGTG GGGGTGGGGA TCCCGCGCGG 000560
000561 TTCCGCCCCC GCCAGGCCAG GGGCAGCTGG CGACTCGCTC GGTCTCTGGT GGTACGCGCC ACGGCCCCCC CACCCCAGCT 000640
000641 CTGCGCGCCC CCTCCCCTCC GGGCACCACC CCCTTTCCAC CGCCCCGCCC CGTCCAGGCA CCGCCCCTGG CTTAACCCAT 000720
000721 TCCCGGCGCG TCCGGCTGCA GCGGGAGAAA CGCAGGGAAC CGAGAGGGAG AGGCGGCATG TGGACAGGCC GGGCCTCATT 000800
000801 TGCCTAATGC AATGCGGCTG AACTCTCGCT GAACTCGCCT GGCGGCGCCT CACCTCCGAG TGACCCACCC ACCGCTGCCC 000880
000881 GTGACATcac ccgctcgcca gcccgcccgc ggggctcgcc cgccagcccc ctgcccggcc gAACCGGGCC ACCTCCCCCG 000960
000961 GAGACGCGGA GAGCGGCGGC AGGAGGCGTA GGGCCGGGTC GCGCGGGGCC AAGTGTTTGG CACCCGGGTG TGACATTGTG 001040
001041 CAGCTCGGAC GCTGTGTCGG AATGAGACAC CGGCTTGTGT CATTGTCTGT GACATCATGT GTGACTCCGG CCGCCGGAAC 001120
001121 CCGACGCGGC AGCGCGGGTG CTGTTGGCAC AAACACAGGC AGAGGGGGCC CTCCTCCCCA CGCTCTGCGT GCTTCCGGCG 001200
001201 AGCAAAGCCC CGCCCAAGGT GTCTCCTAGC TGGGGAACCA GTACCGGCCC CTGGTGCACT GTCCAGCTCT GGAGAGATAA 001280
001281 AAGGAAGAGC TGGTGCCTTC CAGTGGACTA CTTCATCCTA GAAGCCCTCG GGATGCACGT TTCACTGGAA GAAAGGCCTA 001360
001361 GCTTGGGTAG GTCCCTAGAA AGAGGGGATA CCCCTGGAGG AGGGGGTATC CTATTACCCC CACTCTCTAA AAGGAAGGAT 001440
001441 GGAAATGTAC ATGCTACCCA AGGACATTCT TCTAGAAGAA GCCTGgctct ttatatatgt tgtcatttta tcctca
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Predicted Small Protein

Name NONHSAT053541_smProtein_1061:1228
Length 56
Molecular weight 5409.9934
Aromaticity 0.0
Instability index 46.6127272727
Isoelectric point 12.0003051758
Runs 7
Runs residual 0.0242424242424
Runs probability 0.0456633103691
Amino acid sequence MRHRLVSLSVTSCVTPAAGTRRGSAGAVGTNTGRGGPPPHALRASGEQSPAQGVS
Secondary structure LEEEEEEEEEEEEELLLLLLLLLLLLEEELLLLLLLLLHHHLLLLLLLLLLLLLL
PRMN -
PiMo -