NONHSAT053245
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053245 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2522 nt |
Genomic location |
chr17-:35288324..35293421 |
Exon number |
2 |
Exons |
35288324..35290811,35293388..35293421 |
Genome context |
|
Sequence |
000001 cgcgggggAA GGAGTGGACC GGGAAGCGCC TCGGGTTCCA GAATGACGCT CGGCCCATGG ACAGAGCCTG CCCAGTCACT 000080
000081 CTCGGCTGCT ATTGATCCCG AGGATGATGG CCGCCCCTAG CCATTTCCCT CCTCTCTCTT CGGTTCCAGA ACAGCCCAAG 000160 000161 GAGCAGAAAA GAGTGACAAG GCCGTGAAAG GAGGCGCCTG GGGCGTAGCC GGCTCTAGGA GGTTACCCCA TGCGGAGTAC 000240 000241 ACACCCTGCT ACACCCATCC CGGAGGAGGG AGGAAATAGC CAGCCCGGAG CACCCCTGGA CTCTGCCGGT CCCAGAGGCC 000320 000321 ACGCAAACTC CGCCCAGACT CGGTGAGGCC GCAGTAATGC CACGCAGGGA ACTGCGTGGA TAAGGTCGCT CGGATCTGAG 000400 000401 CGCCAAGGTC TCCCGCCTCT CCTTCCCGTC TAGTTCTCTC CGGACTCAAA TTGCCTTAAT CTCACCCATC ACTCTCTCAT 000480 000481 GGAAATGATC TACTCGTGTG CAGTACTTCA CAGCTTGTAT CACGGTCTCC CCTGAACCGT ATAGCAAGAG GGTGGTGGGG 000560 000561 GGTGGAAGAG AAGGGTACTA TCTCCACTTT CCCGGCCAGG AGGCCCAAGT TAGGAGGCTT GTCCGAGATC CCTAGGTCAG 000640 000641 AGCACTATTT AAGGTGAGAA GTTGGGTGGG GAGCTTGGCA CCTTGCTCCA GTGTGCACTT TGCGCCTGGC CATGTTTTAT 000720 000721 AAGCAAGGGG GGCTTGGGCT GGTTAAGGGG GAGCAGGGAC CGCAGGGCCA GGAAAGGGCA GCATCCGGCA GGCCGGGGCG 000800 000801 TCACGGTATG TGCCTGGCCT GGGTAAACAA CTCTGGCTTC CCACGAGCGC TGGAGGGACC CTGGGCATgg ggcaggggcg 000880 000881 tgggggaggg ggggcagggg cgtggggtgg ggcagggagc gggTGGAACA GCGAGGTCAA GCGTGGAGAT TCCAGTTGCG 000960 000961 AGTCAGCTCC GCACCGCGGA GCAAAGACAG GACGTGGATA ATCTTGGGAG GGAGACGCTG AGCTGAAGAA CAGAAAAGAG 001040 001041 AGATAGAGGC AGAAGTGAGG AGAGAGGGAC AGGAAAAGAA AATAAAGGCA GAAAACCACA GAAAAGATGA GACGGAGTGC 001120 001121 GGAAAAGCAG GCGGGGATAA AGAAAGGAAA GATCTGTCGG GGAAATGCGG GGAGAAGTGG AGGAAAAGAA ACAGAAATTA 001200 001201 GACCCAGAGA GAGACCCTGC CACGAAGAAG GCCGCGGGGA CGGGCGCGGA GCCGAGGGCC CTGCAGGCAC GGAGGGGGCG 001280 001281 TCCCGCGGGT CTGGGGGTGT GCGGCTTTGG GACAGGCGAG TGCGTGCTGA GAGAAAGAGG CAGCGTGTTT GGTGGGAGAC 001360 001361 TCTGCGCCCG TGGAAAAGCG GCTCTGGGCA GGAATCCAAC AAATAAATAA AACGTCTAAG ACGGCGTGAC AACAATGTGT 001440 001441 ATTTGGGTGC GTGCCCGTGT TCCTCTGTCT GAACACCCAG TAAGGAAGAC AAACGGGGCT CGTGCCTCAC AGTAATTAAT 001520 001521 CCTCTCACTA ATTGACTCTC TCCCCTTACC TAATGGCGGC GGTCACTGCC GATATCTGGA GAGACATCAA GTTGGGGGAG 001600 001601 ACAGAGAGAG AGAACCCCAA AGCTAACGAC CTTTGGGACT GAGATTGAGT TTTTTCTGGA CTTGGCAGCT CTAAGCCCTG 001680 001681 CCCCCACCTC CACTTTTGGG CAGAGTTCCA TAGATATTGC TGCCTTCCTT CCCCCTCCAG GTTTTGGGCA GCATTAATAA 001760 001761 AGATCTCCTC AGATTAGGGT GATGTGGTTA CACACACTGA AGCCCTTCTA CCGCCCTCCA CCTTGGGAGA TCAGTTTCAG 001840 001841 AGGCTGAAAG CCACCCCTGT CCCTGGGACA TTTCTTACCT CCCTGCAATA CCAGCTCCCC CTCCCATGTT GTTCCCCCAG 001920 001921 GGGCCCAGAC CCTGCACCCT CTTCTTTCAG GCAGTACTAA CTCTTCCAAG GACCTGGGCG GTGTCCCGCA GTCCCCTAAG 002000 002001 GCAGGTGAGG TTTTGAACGG GCTGAGAAGC AGTCTGGGGT TGATGGAAGG AGAGTGGTGG GAGGTCAGGG CAAGGATGGG 002080 002081 GAGAGGCTTC CAGAGACAAC CTTCCTCAGA CTTGGGTTGA GAGACACAGA GGCGCAGAGA GGCGCAGTTG CCACCAGGCA 002160 002161 AGAGAGAGGC CTCTAGGGAC AAAGGAGGGA AAGGTGGGCT CTATGCACTG TGGGAAGGAG CGCCAAGTGT GTGAGAGGCA 002240 002241 GGAAGGTGGT CATGTCTCTG TGACTGTGAG GGTGACAGTT CTGGTCTCTC TGTGTGAGCA TGGGGAAGCC CCCTATGTTC 002320 002321 CCTCACAGCA CCCTCAGTTC TTAGACTGGG GAGAAGAGGC AGGGGACTGG TCTGGGACTT GATGGTCCCC TTGGTAGCTG 002400 002401 AGTTGGCTGG AAGGGGTCCA ACGCCCACAG TCTGTCTGGT AATGCAGCTT TGAGGCTTAG GTTTGGGAGG TGAATGTCAA 002480 002481 CTCTCACCCC TGTGAGGTGG CAGCTTTGCT CTGTTGGCCT CC |
Predicted Small Protein
Name | NONHSAT053245_smProtein_1106:1405 |
Length | 100 |
Molecular weight | 11026.1819 |
Aromaticity | 0.040404040404 |
Instability index | 57.8929292929 |
Isoelectric point | 11.2041625977 |
Runs | 11 |
Runs residual | 0.0225787284611 |
Runs probability | 0.0462896051131 |
Amino acid sequence | MRRSAEKQAGIKKGKICRGNAGRSGGKETEIRPRERPCHEEGRGDGRGAEGPAGTEGASR GSGGVRLWDRRVRAERKRQRVWWETLRPWKSGSGQESNK |
Secondary structure | LLLLHHHHLLLLLLEEEELLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLEEEEEEEEHHHHEEEEEEEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |