NONHSAT053006
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053006 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1229 nt |
Genomic location |
chr17+:32486078..32492454 |
Exon number |
4 |
Exons |
32486078..32486134,32488444..32488918,32490630..32491175,32492304..32492454 |
Genome context |
|
Sequence |
000001 ACAGGAAGAC TTCCTGGATT AATCTGCTAA TCTTCAGCTC atccacctgt ttaatagGCA AAACCTACAG AACTAGTCCA 000080
000081 CACTGAGTGG ACCTCTGGGG CTCCCAGCTG CCGATTGACC TGAACCCCAG AGTGAACTCG TGTTGCTTTG TGGCTTCAGG 000160 000161 AAACCTTGGA ACATCTCTGT GCTGTTTTTT CATTTGTGCT CAATCATTCC TGAGGCCTCC TCCTCCTGCT GCAATTTGAC 000240 000241 AAGACTTGAC CAAATCATTA ACTCCCAGTT AATGGGATAA AATGAGTTTG AATCTGGGAT TCTGGTCATT AACCCCATGT 000320 000321 CACCATCTGC TCCAGCAGTT TGATGGCAGG GCTAGgtgaa ttctaatcac ccaacacttg ttaaactgct gattcctgct 000400 000401 tccccacctc tgctgactca gcatctctgg ggtggggcct gcaaaGGCTC TCTTCCTTGA CGGGGTTATT GAGGGCAGCT 000480 000481 CTAGGAACCC ACCCAGGACC AGACCTGATG AGGAgttcct cctatgcatc agGTCTACTT CTGTCCCTCT TTCCCCTGCG 000560 000561 AAGGAAAAAT AGAAGAAAGA AGCCATCTCT GTTTGCTTTC TCCCTGTCAC TCAATCTCTG GAGCCAACTG CTTCACAAAT 000640 000641 AAAGAGAAGT GCACAGAGAG TCCCTGAAGC CCACCATCAA CAGACAGGCT TTCAACAAAA CTGTATCAGC ACCGCCTTGG 000720 000721 CCATAGCTAC ACTCTACAGA AAATGGGAGA GAGGAACAGC GCTAGAGAAG TTTGTCCTTG CCTGGTTCCC GGGTGGAACT 000800 000801 TCCTCTCCCC CTTGTGTTCT ATGCGTGTGG TTACAGCTGC CTCTGATCTT TGGTGACCAG CGGTTGGCAG TGGTGGTATT 000880 000881 TCAGCATACC TTGATCATCG TGCTTATTAC ACAGCCTCCT TTACCATCAA CCCTACCTAC CTTCTTCTAG CCATGCCCCC 000960 000961 CACCTCCTCC CGTCTCTATC CATCTCTTCG CTCTTTTAAA AAATACTTAA GTGTGTACAG ATCACAGTGA CTTCATTTGT 001040 001041 GTGCCCATTC ACATTTGATG ACTTCCATAA CCCCCATATT CTCTGTACAG ATTGGATTTC CGTGGAAGAA AGAAAATCAA 001120 001121 CATGTATTGG GAGTCAACAT CTCATTcagt cctgtgagtt tattctgcct atttttcaga caaggagact aaggcttcaa 001200 001201 gacggtaagt aaattgccca cagtgtcac |
Predicted Small Protein
Name | NONHSAT053006_smProtein_281:358 |
Length | 26 |
Molecular weight | 2928.3523 |
Aromaticity | 0.12 |
Instability index | 59.864 |
Isoelectric point | 8.04461669922 |
Runs | 5 |
Runs residual | 0.00830188679245 |
Runs probability | 0.0368839427663 |
Amino acid sequence | MSLNLGFWSLTPCHHLLQQFDGRAR |
Secondary structure | LEELLLLLLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |