NONHSAT052939
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052939 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1005 nt |
Genomic location |
chr17+:30677217..30688352 |
Exon number |
5 |
Exons |
30677217..30677345,30678805..30678931,30685522..30685660,30687617..30687784,30687911..30688352 |
Genome context |
|
Sequence |
000001 GCCGTTGGGT TGGGAAAGTG AGGGATTTTT GGCCTCGTTT CTCCTGCTTC TTTTCTCCTC CCTTTTACTT TGCCGGTAGA 000080
000081 ACACAGTTAT GGGTCGCAAG AAGAAGAAGC AGCTGAAGCC GTGGTGCTGG TATTGTAATA GAGATTTTGA TGATGAGAAG 000160 000161 ATCCTTATTC AGCACCAAAA AGCAAAGCAT TTTAAATGCC ATATATGTCA CAAGAAATTG TATACAGGAC CTGGCTTAGC 000240 000241 TATTCATTGC ATGCAGGTAC ATAAAGAAAC AATAGATGCC GTACCAAATG CAATACCTGG AAGAACAGAC ATAGAGTTGG 000320 000321 AAATATATGG TATGGAAGGT ATTCCAGAAA AAGACATGGA TGAAAGACGA CGACTTCTTG AACAGAAAAC ACAAGAAAGT 000400 000401 CAAAAAAAGA AGCAACAAGA TGATTCTGAT GAATATGATG ATGACGACTC TGCAGCCTCA ACTTCATTTC AGCCACAGCC 000480 000481 TGTTCAACCT CAGCAAGGTT ATATTCCTCC AATGGCACAG CCAGGACTGC CACCAGTACC AGGAGCACCA GGAATGCCTC 000560 000561 CAGGCATACC TCCATTAATG CCAGGTGTTC CTCCTCTGAT GCCAGGAATG CCACCAGTTA TGCCAGGCAT GCCACCTGGG 000640 000641 TAAGAAAATT CTTTTAATTG CCCTGTAGGC TTGTGCCTAG TAATGATCTT TTTCAATTTG GATGTTATAT GAATGAAATG 000720 000721 TTACTTTCCA TTTTTTGCTT CTAGAAGGTA TGGGCTCTAT ATATCTTGTC TAATAAAGGG ATCAACCAGT AAATTTAAGG 000800 000801 AATATAAATT TGCCTCTGAG TAATAGATTT TTGGGTTTTA GGGTATATGT AAGCAACCAT CTACTTCAAT TGCATTTACT 000880 000881 GTGATTAAAG TAGTTGGTTA TTTATAGATT TGCGTTTCTG AGATTCAGAA TTATCTGTGA CACTTTGTAG TTGTGACAAG 000960 000961 AAGCAGAGAA ACTCTGTAAA TGATTTATTT GTCAAAGCAT CAAAA |
Predicted Small Protein
Name | NONHSAT052939_smProtein_326:577 |
Length | 84 |
Molecular weight | 10322.0597 |
Aromaticity | 0.120481927711 |
Instability index | 63.7674698795 |
Isoelectric point | 9.69805908203 |
Runs | 12 |
Runs residual | 0.0045515394913 |
Runs probability | 0.027733615969 |
Amino acid sequence | MVWKVFQKKTWMKDDDFLNRKHKKVKKRSNKMILMNMMMTTLQPQLHFSHSLFNLSKVIF LQWHSQDCHQYQEHQECLQAYLH |
Secondary structure | LEEHHHHHLLLLLLHHHHHHHHHHHHHHLLHHHHHHHHHHHLLHHHHHHHHHHHHHHHHH EEHHHHHHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |