NONHSAT052630
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052630 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
527 nt |
Genomic location |
chr17-:27031549..27038109 |
Exon number |
4 |
Exons |
27031549..27031634,27031726..27031861,27033698..27033781,27037889..27038109 |
Genome context |
|
Sequence |
000001 AGGCATTTCC AAGGAGACGC GGGCGCACTG CCcctccctt gcttcctcct cttccctcct tcctctccta gtttcttccc 000080
000081 tcccttcccg ccctactcct tccctccctt ccCACCCTAC TCCTTTCGGC TGCTCTGGTG CCCACCCCCA GTGCCTCGAG 000160 000161 GTCGAGGAGA GCTCCTCGGC CCCGCAGGAC GGGGAGGATT CTGTACAGAT GAGCATAACT TATGTAAACA GGTTACCCAG 000240 000241 CTGGGAGAGA GGACATCTGC TGGCTGGTGT GGCGTCCAGC ACTGATGTGT CTACCTTCTC TGAAGGTGAC TGCAAGGAGC 000320 000321 CTGACAAGTG CTGCTGGAGA CACAAGCAGT GCACTGGGCA CATCATCTAC CCTTTCGCCT CTGACTGTGT CCGCCACAGC 000400 000401 CTGCACCTAC ACTCTGTCAA CCACTGCAAC TGTAATTCTA GCTTTGAATT GGTGCTGCCA GCCCAGTCCC AGCTCTGCAC 000480 000481 ACCTTGCTCT GCTCTAAGAG AAATGGGGAG GAGGTCTGTT GGCCTGA |
Predicted Small Protein
Name | NONHSAT052630_smProtein_284:496 |
Length | 71 |
Molecular weight | 7017.0184 |
Aromaticity | 0.0285714285714 |
Instability index | 55.1542857143 |
Isoelectric point | 7.68048095703 |
Runs | 12 |
Runs residual | 0.0265912305516 |
Runs probability | 0.0596994052876 |
Amino acid sequence | MCLPSLKVTARSLTSAAGDTSSALGTSSTLSPLTVSATACTYTLSTTATVILALNWCCQP SPSSAHLALL |
Secondary structure | LLLLLLLEEHHHHHHHLLLLHHHLLLLLLLLLLEEEEEEEEELLLHHHHHHHHHHHHLLL LLLHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo oooooooooo |