NONHSAT048219
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048219 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1794 nt |
Genomic location |
chr15+:89559560..89561953 |
Exon number |
2 |
Exons |
89559560..89560016,89560617..89561953 |
Genome context |
|
Sequence |
000001 CTGGGATTAC AGGCGTGAGC CACCGCACCT GGCCAAAACC TTTATTTTCT CAATGAAGCA GACATTCACT CCACAGACCT 000080
000081 TATGTACTAT ATGCAGAACA CTCAATAAAT GCCTCTTGGC CCAGCTGAGG CTCAGTAGCT GATCATTCAC TAAGAAGGCA 000160 000161 GAGGGCTCTG CTGATGCAAA AGGGATACCG GGTTCAGGAT TTCAACTGGG GGAAGTTTCC ATTGAGCCTT CTAAGTGCAG 000240 000241 GGAGCCTCCT GACCTCAAGT GATCCGCAGA TCTCGGCGCC CCCATAGAGT GTTGAAGCAT CCCGGGCCAC CATCTGTGGC 000320 000321 CCAAAAGGTT TTTTAAGGGG CAAGAATCCT TTTCTTGGCT TCTGCAGTCA GTCTCCTTGC CAGTGACAAC ATCAGGGCAG 000400 000401 CAGTGGAAAA AGACACGCTT TCAGTTGCTG GATAAAGTGT CTTCACCGTC TTGGCAAGAA TCCCTTCACT GCCTGAGGGA 000480 000481 CCTGTCCTAG GTGCCAGAGT GAGCAGGGAG GAACACAGGT GTGTCTCGGT GGCTGGAGAA CCCAGCCAGG ACGACGCCCA 000560 000561 GTTTGGAACT GTACCGAAGC TGAGCCCTGC CTTGCACGGC TGAAGCTTAG CCACAGAGGC GGAACTTCCC TGGCTTTTCC 000640 000641 TGGAAGCGGA AGCCGTGAAA TGGCCAAAGC ACAAGACAGG GTGGTGCAGT TTTGCTCCCG CGCGATCACC GTTGGCCACG 000720 000721 CGCCTCGGTC TCTATCTGTA AAAGAGATCC GCATCTCTGG TATTTGATGC TGGAGAGAAA AATGTGCGGC CTCCGCCCAA 000800 000801 CCTTGAGTTT CCTGCTCCAC CGCGCCCTCT CGTGGTTAAC TGGACTCACG GCTTTCTCGC CCCCAACCCC AACCACCTAA 000880 000881 ATTGCGGTTC TCAACCTTGG CTGAGCGTGG GAATCACCCG GGGACCTGCG AAACACCGAT GCCTGGGTAC CGGACTCTAT 000960 000961 CCGCGCCTCC CCCTGCGAGA GATTCTGACT TAATTGGCCT GATGCAATCC GGGCGTCCCC TGGGGATCAC AGTGTGCAGT 001040 001041 CAAGGCTGGG AAACACTGAC CCACCTCTGC TCTGCCAGGG ATCCTGCGTT TGGCTGACGA CATTTCTCTT GTCAGAGCCC 001120 001121 ACCGGACTCT GCTTTCCGGA TATAAAGGAT CCTTTTGCAA GTCTAAACAC CTCAATGTCG GCATCACACC CTCAAGCATC 001200 001201 CACCCTCTAC TCCTGAAATA CTCATGATTA ATATGTGCTT TTAATTTCTA TTGCTGGAGA AAATGTTTCT GAAAAATTGC 001280 001281 ACTTACATAA ATAGATAAGG CATATTATTT GTATTATCTG CTGACAACAT CCGTGATGTG TGCATGTGTG TGCTGCGTAT 001360 001361 GCACAGAGCT TCCTCACTAT AATTTCAGGA GCTTCTCAGG GCCTTAGGTC AGAGATCCGC TAGCCGTGCC AGGGCACTCT 001440 001441 GGCCCTAATG TTAAAAATAG ACCATGGCTT TAGCCACTCC TGTCAGTATC TTGTCTCACT GCCCAGTGCT CCATTCATCA 001520 001521 GGAGAAATTC CTGAGCTGCT GCCCAGCCAG TCAGCCAGGC CCAACTGAAA TTCCCAGGGG GCCTGTGAGG GGGGTCACAC 001600 001601 GTACTCTTAG CTTCTAGGCT GGACCTCAGG ACTCCTAGCA GAAGGATATC CACTGTGGCC CTGCGACCTT GTCAATCGTT 001680 001681 TGATTCACAG CCTCTCAGTG ACACTGGCAC TCAATGAGAT GGGCTCCTTT CATGACACGG TCACCACCAT CATCACAATC 001760 001761 TCCAGCATTT TTGGGTTCCT ACTATGTGTA CAGC |
Predicted Small Protein
Name | NONHSAT048219_smProtein_938:1096 |
Length | 53 |
Molecular weight | 5529.2712 |
Aromaticity | 0.0576923076923 |
Instability index | 50.7442307692 |
Isoelectric point | 6.50628662109 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0331465919702 |
Amino acid sequence | MPGYRTLSAPPPARDSDLIGLMQSGRPLGITVCSQGWETLTHLCSARDPAFG |
Secondary structure | LLLEEELLLLLLLLLLLLLLLLLLLLLLEEEEELLLHHHHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |