NONHSAT047971
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047971 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
883 nt |
Genomic location |
chr15-:85070012..85113931 |
Exon number |
10 |
Exons |
85070012..85070107,85070850..85070898,85077411..85077469,85081763..85081847,85082935..85083019,85085378..85085515,85089452..85089508,85098192..85098301,85105191..85105292,85113830..85113931 |
Genome context |
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Sequence |
000001 ATGTCCGTGT CAGGGTTCAA GGCCAAGCTG AAGTTGTTGT CCTCTATTTT CCACAAGAAC CAGGAGCCGC CGCGGCAGCT 000080
000081 CAGGCTCCAC TGCAACATCA CGGAATCCTC TTCATTTTCT TTACCAATAT GGTTTGTGGA CTATGATGAG CCAAATCTGA 000160 000161 CATCAGTTCT GGAATGTCTA GAAGATGCTA AGAAAAACAA TTCACTTCAT CAGCAATGGA AGTGGCTGAT ATGTGGACTC 000240 000241 TGCAGATTAT ATAACCTTCC TAAGCACCCG AATGTTGAGA TGCCAGATCA ACCACTACCC ATGGGTCAGG TAAAAATGGG 000320 000321 ACAACAGAAG AAGTGACTTC AAAAGAAGAG GAAGAAGAAG AGATGGATGA AGATATAGAA GACTTAGATC ACTGTGAGAT 000400 000401 GAAAGAAGAG CCTACTAGTG AGAAGAAGTT GGAGGATGAA GGAACTGAAA AAGAAAACTG GGCAATATTA GAGAAAATTA 000480 000481 GGAAGACTGA AAGGCAAGGC CATTTAAATG CTGCAGTGTC TGGGTCAGTG CAAGCTTCAG ATAGACTTAA GAAAGAGTTC 000560 000561 AGGGACTTAT ACAGATCACA GAGTTATAAG ACAGGTTGAC CCTGATAGTT CTTTGCACAG TGATCTTCAG ATCTTAAAAG 000640 000641 AAAAAGAAGA GATAGGAGAC ATTTTGCTTA TGTTTTAAGG ATAACTTTCC ATTTGATCCT CCATTTGTTT GAGTGGTGTT 000720 000721 ACCTGTTCTC TCAGGAGCGT ATGTATTGGG TAGAGGAGCA TTATATATGG AACCTCTCAC AAAACAGGGC TGAAGCAGTG 000800 000801 CCTACTCGAT AGAATCAGTC ATCATGCAAA TAAAAGCCAC CTGAGTCAAA GGCAAAGCCA GAGTGCAGCT TGGAGCAAAG 000880 000881 AAG |
Predicted Small Protein
Name | NONHSAT047971_smProtein_362:598 |
Length | 79 |
Molecular weight | 9101.9165 |
Aromaticity | 0.0512820512821 |
Instability index | 43.8102564103 |
Isoelectric point | 4.91925048828 |
Runs | 9 |
Runs residual | 0.0182926829268 |
Runs probability | 0.030157608589 |
Amino acid sequence | MDEDIEDLDHCEMKEEPTSEKKLEDEGTEKENWAILEKIRKTERQGHLNAAVSGSVQASD RLKKEFRDLYRSQSYKTG |
Secondary structure | LLLLLLLLLLLLLLLLLLLHHHHLLLLLLHHHHHHHHHHHHHHHLLLLLLEEELLLLHHH HHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |