NONHSAT047616

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT047616

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1209 nt

Genomic location

chr15+:79165315..79185360

Exon number

7

Exons

79165315..79165399,79170555..79170601,79172854..79172921,79178483..79178569,79183331..79183356,79183826..79183914,79184554..79185360

Genome context

Sequence
000001 AGTCGGGGGT GGTGGGAGAA GGAGGAGGCG GCGAATCACT TATAAATGGC GCCGAAGCAG GACCCGAAGC CTAAATTCCA 000080
000081 GGAGGGTGAG CGAGTGCTGT GCTTTCATGG GCCTCTTCTT TATGAAGCAA AGTGTGTAAA GGTTGCCATA AAGGACAAAC 000160
000161 AAGTGAAATA CTTCATACAT TACAGTGGTT GGAATAAAAA TTGGGATGAA TGGGTTCCGG AGAGCAGAGT ACTCAAATAC 000240
000241 GTGGACACCA ATTTGCAGAA ACAGCGAGAA CTTCAAAAAG CCAATCAGAA AACGAAAAAG AACAAACAGA AAACACCTGG 000320
000321 AAATGGAGAT GGTGGCAGTA CCAGTGAGAC CCCTCAGCCT CCTCGGAAGA AAAGGGCCCG GGTAGATCCT ACTGTTGAAA 000400
000401 ATGAGGAAAC ATTCATGAAC AGAGTTGAAG TTAAAGTAAA GATTCCTGAA GAGCTAAAAC CGTGGCTTGT TGATGACTGG 000480
000481 GACTTAATTA CCAGGCAAAA ACAGGTAACT TGAAAAGCTA CCCAGATTGT TAAGCTATAT GATACATTCT TGCTAGCAAA 000560
000561 AAAAGTTTTT AAAGGAAAAT GTTATATTGA CTTGAATTAT TAAGGTATGA CTGataaaat aatattttaa tttaGAGGCT 000640
000641 GAACACTTTA GAACTACTAC CAGAAAGAGT AAGTTAGAAG AATAAAAGTT CACATATAAA TTTTATGAGG TTATAATGAT 000720
000721 AAAGGTGGAA ATAACTCATT TTTGGAGATT GCTAGGGCAG GAACTCGTTC TGAAAATTCA TAAAGGTGAA GAAGCATATG 000800
000801 TCTTACTGTC ATTGCTAATG GTAGGCCATA gaaagcacac accaccacct gcaaggtatt catgaccctg aaaagaacct 000880
000881 gaatcttact aagcgcctgg atctattgtt agtttgcagg aaataggatg tttaatggag tgacatgttt gtcaatcgtt 000960
000961 gaactctata attgagaatt ttataggaca aatgaagcta tttgaacaaa tggcataggt agggttaggg atagttgggg 001040
001041 gagatgatta gggactgctt gaggattatg agacttaaga gacctatcag tcatatacag tatgtggata tagtttgaat 001120
001121 tctgatttga aTCCTTTGGA GGGTTATGCA GTTACagcta aactgcgaag attcaagcat ggctgtatca cttattattt 001200
001201 gtgagtttg
[back to top]

Predicted Small Protein

Name NONHSAT047616_smProtein_209:346
Length 46
Molecular weight 5461.7781
Aromaticity 0.133333333333
Instability index 49.62
Isoelectric point 6.54681396484
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0329888712241
Amino acid sequence MGSGEQSTQIRGHQFAETARTSKSQSENEKEQTENTWKWRWWQYQ
Secondary structure LLLLLLLLEELLLEEHHHHLLLLLLLLLHHHHHHHHHHHHHHHHL
PRMN -
PiMo -