NONHSAT047596
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047596 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2469 nt |
Genomic location |
chr15+:79021610..79025225 |
Exon number |
5 |
Exons |
79021610..79021938,79022045..79023417,79024263..79024613,79024714..79024795,79024892..79025225 |
Genome context |
|
Sequence |
000001 gtttgacttc catttgtgaa gtttaaatga gatTCCTTAT GGTTGTTTTT ATGTTAACCC CTAGTATGTG GCCTGCTGTA 000080
000081 AACACCCAGG ATACCCAGGA AATGGTCATT GCTGTTTGAT TTTCCTGATG CCCAGTCTCA AGGGGAAGCT GGGCCAATGA 000160 000161 GTACAGCCAC TTGCCATCAG GCTGTCCCTA TAGGAGTCAC TGAAGGGGGC CCAGggtgtg gtgaggagag ccccagacac 000240 000241 caggagtaag agaagatcta acttgccacc agcttgctgg atgaccacag aaaaatcact tcttcctttg gacctcagtt 000320 000321 tcctcctctG TGGAGGTCTG GAGCTCTACG AGATTCATCA CCCATGTCCT GGGCCTGAGG AGAGGGGACC AGTGAGCATA 000400 000401 TTAAGAGCTG CATTGGTCAG CTGACTCCAC TCTGTGACTG CATCGCTCAG GGGACTTTTC CATCTATTTG TTCCTGCCCC 000480 000481 TGGCAAGGCA GCAGGTGGCC ATTTGGAAGA ATGGCACAGG CCATGGTTTT AATCTCCTCT GCTCTTCTTC AGCGTTTTGT 000560 000561 TTTTCTGAAC CCACATCTTC CTCCTACCCT GACTTTCTTG CTTCTCTCTA AGCCACTTCT GTCTTTCGCC CCCTGCCCTT 000640 000641 GTTTTTCCCT TGTCACCTCC TGTAGATTCA GGACATTCTG AAGGTGCGGG TGTCCAACCT TAACCACTCC AATGGGGTAG 000720 000721 TGCTCCCCCA TTGGACAAGT GGAAGGTGAG GCAGTGCCAA GACCCCTCTC TGGCTGCTGT CTCCAGCTGT GCATGGCCCT 000800 000801 GAGGCTTCTC TGGTTTGGGG GATACTTGGC CTCTGCCTTG TTTTATGTTG CTGCCATTAA CCTTCAGCCT GTTTCTGTCT 000880 000881 GCTTCTTCAC CTGCTTGATT GATTGGGTTT TTTCCTTCCC CGCATCTTTT ATCATCTTGG AAATGTTGAG ACCTTAAAGT 000960 000961 TTAAAAGTAA TTTGGGAATA ACAGACAGTG CAGGCATGTG GGATTTGGGG Cttttttttt tttttttttt tttttttgag 001040 001041 acagagtctc actctgtcac ccagactgaa gtgcagtggt gtgatctcgg ctcactacaa cctctgcctc ccaggttcaa 001120 001121 gtgattctct tgccttagcc tcctgagtag ctgggattac aggcacctgc caccatgccc agctaatctt tgtattttta 001200 001201 gaagagacgg ggttttacca cgtcggccag cctggtgttg aactcctgac ctcaagtgat ccacccacct cagcctccta 001280 001281 aagtgctggg attacaagca tgagccacca tgcccggccC TTGCTGTTTT TATACTTTCT CTATATCCAT AACTGTTTCC 001360 001361 TATGTAATCT TTTTTTGAAT TTCTCATTTT TATAACTCCT GCATCATCTG TTACCCTGAA GGATCTGGAG GTAAGAGGCC 001440 001441 CTGGGCCAAG GTGCAGTGAC CCTGCAGGCC AGCCCTCCAA CCTCCTTTCA CAGCAGGGGC TGGGTGCCCC TCTGCCAGCT 001520 001521 GAAACAGCCC GACAGCCCAC ACACACCCCA GCCCTAATGA TTGTTCTCTC CACCTCTCCC CACAATCCTC CTCCAACTCC 001600 001601 TCCTCTCTGC ATGCGCCTCA GAGTCGGTAC CAAGAACTGG AAGTAGCCCT GAACTCAAGC TCCGCAATAA TCAATCAACT 001680 001681 AAATGAAAAC ATAGAATCAT TGAAACAGCA GAAGAAACAA GTGGAACATC AGCTGGAAGA AGTAACGTGA TTTCTTTGCT 001760 001761 CACAACATGA CTGCTGGGTT TGGGGGGCAC TCAGATGTAG AGGCGCCAAT CTCGTCTCAC CCACTCCCAG CCTGGGGAAG 001840 001841 AAGGCTCACC CCTCAGATTC CACCCCATCC CCACAGGGTC CCTGATAACC TGGTCCCATG GGTGGGCCTG TCCTGGGGCA 001920 001921 TTGGTGGCAT TCTGGGGGCA TGTCTCTTGC TATGCCATGT CTGCCTCCCT GTGGTAAGAG CCCTGTCTTC CTCTTCCTAT 002000 002001 AGGAAAAGAA AGCAAATAAG GAAATACACA AAGCACAAAC GGAGCAGTTA GAGACAATCA ACATCCTCAC GTTGGAAAAG 002080 002081 GCAGACTTGA AGACCACCCT TTACCATACT AAACGTGCTG CCCGACACTT CGAAGAAGAG TCCAAGGATC TGGCTGGCTG 002160 002161 CCTGCAATAC TCCTTACAGC ATATTCAAGA ATCGGAGCGG GCTCTCTGTG CTGTGTCTAC ACAGCAGCAG GAAGAGGACA 002240 002241 GGGTGAGTCC GACCAGCTGC CCCATCCCCT GGCAGCCTGG CTTCCCAGAT GGAGGAGTGA GCCTAAAGGT TCCTTCTCCA 002320 002321 GGATGGAGTG TCCTGCCCAG AAGGCAGCAT GGTCATTTCT CGCTGCTTTT GTGTATGGTT GTTAGAGGCA GCCTGGGGCT 002400 002401 GAGTCAGCTG CTGTGGCTAA TTTGGGGGGC ACTGTTGGGA GTAAGCACTG GATGCAGAGC TCAGAGGCC |
Predicted Small Protein
Name | NONHSAT047596_smProtein_1766:2050 |
Length | 95 |
Molecular weight | 10338.9915 |
Aromaticity | 0.063829787234 |
Instability index | 66.4734042553 |
Isoelectric point | 10.6513061523 |
Runs | 9 |
Runs residual | 0.0330712303423 |
Runs probability | 0.0389899703626 |
Amino acid sequence | MTAGFGGHSDVEAPISSHPLPAWGRRLTPQIPPHPHRVPDNLVPWVGLSWGIGGILGACL LLCHVCLPVVRALSSSSYRKRKQIRKYTKHKRSS |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLHHHHHHHHHHH HHHHLLLLEEEEELLLLHHHHHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTT TTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiii |