NONHSAT047596

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT047596

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2469 nt

Genomic location

chr15+:79021610..79025225

Exon number

5

Exons

79021610..79021938,79022045..79023417,79024263..79024613,79024714..79024795,79024892..79025225

Genome context

Sequence
000001 gtttgacttc catttgtgaa gtttaaatga gatTCCTTAT GGTTGTTTTT ATGTTAACCC CTAGTATGTG GCCTGCTGTA 000080
000081 AACACCCAGG ATACCCAGGA AATGGTCATT GCTGTTTGAT TTTCCTGATG CCCAGTCTCA AGGGGAAGCT GGGCCAATGA 000160
000161 GTACAGCCAC TTGCCATCAG GCTGTCCCTA TAGGAGTCAC TGAAGGGGGC CCAGggtgtg gtgaggagag ccccagacac 000240
000241 caggagtaag agaagatcta acttgccacc agcttgctgg atgaccacag aaaaatcact tcttcctttg gacctcagtt 000320
000321 tcctcctctG TGGAGGTCTG GAGCTCTACG AGATTCATCA CCCATGTCCT GGGCCTGAGG AGAGGGGACC AGTGAGCATA 000400
000401 TTAAGAGCTG CATTGGTCAG CTGACTCCAC TCTGTGACTG CATCGCTCAG GGGACTTTTC CATCTATTTG TTCCTGCCCC 000480
000481 TGGCAAGGCA GCAGGTGGCC ATTTGGAAGA ATGGCACAGG CCATGGTTTT AATCTCCTCT GCTCTTCTTC AGCGTTTTGT 000560
000561 TTTTCTGAAC CCACATCTTC CTCCTACCCT GACTTTCTTG CTTCTCTCTA AGCCACTTCT GTCTTTCGCC CCCTGCCCTT 000640
000641 GTTTTTCCCT TGTCACCTCC TGTAGATTCA GGACATTCTG AAGGTGCGGG TGTCCAACCT TAACCACTCC AATGGGGTAG 000720
000721 TGCTCCCCCA TTGGACAAGT GGAAGGTGAG GCAGTGCCAA GACCCCTCTC TGGCTGCTGT CTCCAGCTGT GCATGGCCCT 000800
000801 GAGGCTTCTC TGGTTTGGGG GATACTTGGC CTCTGCCTTG TTTTATGTTG CTGCCATTAA CCTTCAGCCT GTTTCTGTCT 000880
000881 GCTTCTTCAC CTGCTTGATT GATTGGGTTT TTTCCTTCCC CGCATCTTTT ATCATCTTGG AAATGTTGAG ACCTTAAAGT 000960
000961 TTAAAAGTAA TTTGGGAATA ACAGACAGTG CAGGCATGTG GGATTTGGGG Cttttttttt tttttttttt tttttttgag 001040
001041 acagagtctc actctgtcac ccagactgaa gtgcagtggt gtgatctcgg ctcactacaa cctctgcctc ccaggttcaa 001120
001121 gtgattctct tgccttagcc tcctgagtag ctgggattac aggcacctgc caccatgccc agctaatctt tgtattttta 001200
001201 gaagagacgg ggttttacca cgtcggccag cctggtgttg aactcctgac ctcaagtgat ccacccacct cagcctccta 001280
001281 aagtgctggg attacaagca tgagccacca tgcccggccC TTGCTGTTTT TATACTTTCT CTATATCCAT AACTGTTTCC 001360
001361 TATGTAATCT TTTTTTGAAT TTCTCATTTT TATAACTCCT GCATCATCTG TTACCCTGAA GGATCTGGAG GTAAGAGGCC 001440
001441 CTGGGCCAAG GTGCAGTGAC CCTGCAGGCC AGCCCTCCAA CCTCCTTTCA CAGCAGGGGC TGGGTGCCCC TCTGCCAGCT 001520
001521 GAAACAGCCC GACAGCCCAC ACACACCCCA GCCCTAATGA TTGTTCTCTC CACCTCTCCC CACAATCCTC CTCCAACTCC 001600
001601 TCCTCTCTGC ATGCGCCTCA GAGTCGGTAC CAAGAACTGG AAGTAGCCCT GAACTCAAGC TCCGCAATAA TCAATCAACT 001680
001681 AAATGAAAAC ATAGAATCAT TGAAACAGCA GAAGAAACAA GTGGAACATC AGCTGGAAGA AGTAACGTGA TTTCTTTGCT 001760
001761 CACAACATGA CTGCTGGGTT TGGGGGGCAC TCAGATGTAG AGGCGCCAAT CTCGTCTCAC CCACTCCCAG CCTGGGGAAG 001840
001841 AAGGCTCACC CCTCAGATTC CACCCCATCC CCACAGGGTC CCTGATAACC TGGTCCCATG GGTGGGCCTG TCCTGGGGCA 001920
001921 TTGGTGGCAT TCTGGGGGCA TGTCTCTTGC TATGCCATGT CTGCCTCCCT GTGGTAAGAG CCCTGTCTTC CTCTTCCTAT 002000
002001 AGGAAAAGAA AGCAAATAAG GAAATACACA AAGCACAAAC GGAGCAGTTA GAGACAATCA ACATCCTCAC GTTGGAAAAG 002080
002081 GCAGACTTGA AGACCACCCT TTACCATACT AAACGTGCTG CCCGACACTT CGAAGAAGAG TCCAAGGATC TGGCTGGCTG 002160
002161 CCTGCAATAC TCCTTACAGC ATATTCAAGA ATCGGAGCGG GCTCTCTGTG CTGTGTCTAC ACAGCAGCAG GAAGAGGACA 002240
002241 GGGTGAGTCC GACCAGCTGC CCCATCCCCT GGCAGCCTGG CTTCCCAGAT GGAGGAGTGA GCCTAAAGGT TCCTTCTCCA 002320
002321 GGATGGAGTG TCCTGCCCAG AAGGCAGCAT GGTCATTTCT CGCTGCTTTT GTGTATGGTT GTTAGAGGCA GCCTGGGGCT 002400
002401 GAGTCAGCTG CTGTGGCTAA TTTGGGGGGC ACTGTTGGGA GTAAGCACTG GATGCAGAGC TCAGAGGCC
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Predicted Small Protein

Name NONHSAT047596_smProtein_1766:2050
Length 95
Molecular weight 10338.9915
Aromaticity 0.063829787234
Instability index 66.4734042553
Isoelectric point 10.6513061523
Runs 9
Runs residual 0.0330712303423
Runs probability 0.0389899703626
Amino acid sequence MTAGFGGHSDVEAPISSHPLPAWGRRLTPQIPPHPHRVPDNLVPWVGLSWGIGGILGACL
LLCHVCLPVVRALSSSSYRKRKQIRKYTKHKRSS
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLHHHHHHHHHHH
HHHHLLLLEEEEELLLLHHHHHHHHHHHHLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHH
HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTT
TTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiii