NONHSAT046977

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT046977

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4700 nt

Genomic location

chr15+:69964060..69978037

Exon number

5

Exons

69964060..69964246,69969885..69970095,69971188..69974822,69976635..69977007,69977744..69978037

Genome context

Sequence
000001 tgcagtggaa actccccagg agtttggatg cttcatctct gctgagaccc agtgcctggc actgaaggtg ctcaggaaat 000080
000081 accttctgaa tgaTCGGAAG CCCCTGCCAT CTGCTAAACT GGATCTATGA TGACAGAAGC CGAGGAATGT GAGGTTCATC 000160
000161 TAGAGAGTTC TTGTGAATTT TCCAAGGGAG GCACCTGttg aattcaggca tcggcatgtg acttgatttg gtcaatgaaa 000240
000241 tgtgagagaa gtgacatcca ctttgaggca ggcactttcc gagtgagtat gtacttcccc atgttccccA GTGTGGTTGC 000320
000321 TTAGCCCAGA ATGAGATAAC AGCAACATAG AGCATGACCT GTAATTGCCG TGAAGATGAG AGAGAAACAG ACCTGGAAat 000400
000401 gagccactgc acccagtcaa gaatagactg taaatgtttc ttatcagatt taaagagtct tctatcagta attccaaaag 000480
000481 ggaggagggt ataatgaggc atgtccagct ctctgttccc atcatgtcct gaattcattt ttcaggttaa ctttggaatg 000560
000561 cccttggcca acaggagggg tccattcaga tggctggggg aacttagaat tttatttttg gtttataCAG TCCATCTGCA 000640
000641 TTCTCAAAGC TCCAGGAGGC AGGAGCCATG GTGGGTCCAG GGGAAGGCAA CTGACACTCC AAAACTCCCT TCTCACTGCT 000720
000721 GCTTCAATGC CAGCTTCACA GAAAGATATA TGATGGTTCT ATTTATTTAG TTATCACAAA TGTCACTATT ATCACAGAAG 000800
000801 ACATTAATTT TTAAAAGAAA AGGAAGAAAA TATGTCACAT TTCTGTTTTG TGCATATGCT GATTGAATGA AAAGTTTATA 000880
000881 TCAGATGCCA ACTTAAAATA AGGACATATA AATATTTAAT TGTTTATATG TATGTATACA TTGCTGTATA GACAATATTT 000960
000961 ATCTATACAG TTATAGAGca ctgattctca gctgaggggt gatttttact ttccagggag acatttggca atatcaggag 001040
001041 acatttttgg ttgtcccagc tgagggcttg ggggtactcc tggcatccag tgggtagagg cctgggatgc tgctaagcat 001120
001121 ccttcagtgt acagggcagt ccatattatc tgaactgtgc tgaggttggg agagcctgGC CTGGATGTAC ATCTAAAGCC 001200
001201 AGGAGTTCTG GGGCTGTTTT GTGTGAAGCC ATGAGTGCTG GCATCATTCT TCAGAGCATC ATTGACACAC ATCTGCTTGA 001280
001281 TTCATTTCAC GTCCCCACCT TGGCTGACTC ATCTAGAAGA AACCACAAGT CACAGATCAG CGAGGGGCCA GCCCTCACGG 001360
001361 TCCTTACAAG ACAGCCTCGA TGGCACTGGG GTTCCCCTGG GAACACACAT GGTCAAGCAT AGCTGCCTTG CTCAGCTCTC 001440
001441 AGGATGACAA CTATTTACAC CTAGTGTGCT TTATAGCACA CCTGGGATGG GAGTTGCAAC GGCGGAAAGG TAACGGTGTG 001520
001521 GGAGGAAGGG AGTGAGAAGG GGAACCGGAG AAGGGAGGGC CAGTCATGTT AGTTTTATGA AGATATGACA ATTAGCGCAT 001600
001601 CATTTAAAAC ATTGCTCATA AGGATTGCTT ATGCACAATT TGTCTATATA TGAAGATATT GAGATATGTG ATTTTATAGC 001680
001681 TACAGCTATA TGTAATATAT GTGTGTGTGT GTGTGTATAC ACACATTAgt aatgaggtga aacatttact gtcctaacag 001760
001761 ctggaactaa cattccacat ggaatgggaa ctgactttga gacactttct ggataagtca ctggactgga gagagaaact 001840
001841 tggagggcaA ATGCCCCAGC TGGACTCCCA GAGAATAAGC TAGCTTGTTG CTGAAGATGG AAACCTTCTC ACTTTTGCTC 001920
001921 CTGAGAGGGG AGATTagaaa aaaaaataga aaggaaacaa aaaacagaga aaaagaagga ggaagacaga gtagccagaa 002000
002001 agaTGATGAG ATGCTAGGAT GCTTTATGGG TGGCAGAGCC CGTGAGAAAT GTGTGGTGGG TTTTGGGGAC GGGGTGAAGT 002080
002081 GGGAAGGCCT TTAGGAAGCA GACTGTGGTG CTACTTTGCC ACTTTTCTAA GTGGGAGAGA AAAAAAGAAT GAGAGTGTGG 002160
002161 CCCTAGAACA TTTGTCATGC AGTGTGCTCA GAGCTATATT AGGATGTCTT TCCTGTCCTG TCTGATGCTC TATGTGGCAG 002240
002241 GTTTGAGCTG CCCAGGGAAG AGACTCAGCC TCCAGGGCCC TCTCTTCCCC TGTGCCCTGC TCCATACCTC CATGTGGTGC 002320
002321 ATGAGGGAGG GCCCAGGAGG CTGAGGCCAT GCTGGGGCCC TAAGCTCTGG CCTAACCAAG TGAAGTCTCA GGGGAGACCT 002400
002401 TGAACCATAA GGCAGGGTTT AGTGTTTCCA GCCACACGGA TCTAGATGTT AAGGAAGCTA GGGAGCTCCA GCTGACAGGT 002480
002481 GGGGAACCAG ACTTACTCCA CCAAACGATT AGACCAGATG CCAACTCATT TCCAGATCTC ATTGCCAAAG ATACTAGAAA 002560
002561 AGCCCTTAGG TAAAACAAAG CGAGGAATTG GAGGCAGACA CAAATCCACC AAGTGGAGAA TCCACACACT TGCAGCAATG 002640
002641 ACACTAATGC TTTGAAGGAG GCAAATTTCT CAGACTTGTC ACATATTTAT TTGCAGTTTC AGTCTCTAGA GATTCCAGAG 002720
002721 TCTGGGATCT GGACTGGGGT GAAGGGAGGC ATGGTTTTGC CACAGCCTGC CCTGTACTGC TGAATTCTCC TGCGCGTGCT 002800
002801 CAAGTGCTTG CAAATGAAAG GTCATCTGGG CCTTGATCAG TCGTGTGGCC TGTGGATGGT GAGCAGCCTG GCAAAGGCAG 002880
002881 AGGTCTGTGA GGTGGGGGCA GTGGGGCTCC GTGGGCAGGT TTGCCATGCC TGAGCACCAG GTCCCTACTC TGACAcaggc 002960
002961 acaccacaga gatattgcag gtttggttcc aggctaccac aataaagcaa atatcacaat aaaacaagtc acacaatttt 003040
003041 tttggtgtcc cagtgcatat aaaagttgtg tctgcatgat actgttgtct attaagtaag caatagcatt gtctaaaaaa 003120
003121 caatgtacat accttaatta aaaatacttt attgataaaa aatgctaacg atcatcagaa tcttcaagtc gtcataaaca 003200
003201 ttttgctggt ggagggtctt ccttcagtgt tgatggctgc tgactgatct gggtggtggt tactgaagat tgggatgaca 003280
003281 gtggcaattt cttaaaggac aaaaacaatg aagtttgttg catcaattga ctcttccttt caaaaaagat ttctctgtag 003360
003361 cttttgacaa cattttatcc acagcagaac ttctttcaaa attggagtca atcctcttaa tccctgctcc cgctttatca 003440
003441 actaagtttg atattctaaa tactttgttg tcatttgaac gatgttcata gcaccagtag attccacctc aagaaaccac 003520
003521 tttctttgca tatctgtcag aagcaactcc tcatctgctg aagctttatc ataaaattgc aatgattcaa tgtcatcttt 003600
003601 aggctccact tgtcatttta tgtctctgcc acttctgcag ttacttcctg cactgaagtc tgaagccctc aaagtcatcc 003680
003681 atgagagttg gaatccactt cttccaaact cctgttaatg ttgctatttt gaccacgttc tatgaatcac aagtgttctt 003760
003761 atggcatcta gaaggggaaa tcctttccag gaagatttca atttattttt cctagatcct tccaaggaat cactatctat 003840
003841 gactgctaaa acttttaaaa aattatttct taaataataa gacttgaaag ttgaaattac tctttgagct aagggctgag 003920
003921 attggatgtt gtgttagcag gcatgaaaac aacatcaatt gtacatctct ttatacatct ccatcagagt ttttgggtga 004000
004001 ccaggtccat tggcaatgaa cagtcatatt ttggatgcca tcaagctgag atgtgaagcg gaagtgaggc agaggctccc 004080
004081 ttccttttgt ttggcgcagt tttctgtgag agagcagagg tgggagatga ggggacctct gccccagtgt ttctgcatcc 004160
004161 aagctccagc cttgttgaag gtgagaaaag cagctgtgat ggttttatga ccctagtccc tggcttctga tccctggacc 004240
004241 acagctaagg ggctgtgttc ttgaatagat agtggtgatc tcccaattct ccccgtcctg gctgtgtcac agggagcaac 004320
004321 tctctcagtg ggttggttct gtggtgtttg gagagacatt cctggaagcc caggcaagag tctgctgctc cagtccttcc 004400
004401 agtgcttttg aaaaaaaaaa aaaaaaggaa agaaagaaaa GAAAAGAAAA GAGCTACACT GGTTTCTATC TCCCACTAAC 004480
004481 TGACACAGGA CTTTATAAAG ACAACCAGAG GAGTTGTTAA GAACCATTGA ACTAATACCC TGGATTTAGA ACAACAGAAA 004560
004561 GTTCACAACA CACAAACAGC CATAAAGGAG GTAGAGTGGG TTCCTTTCCC AGTCAGCACT TCCTCCTCTC TGAGAGCTAA 004640
004641 GCCTGGATTC TCATACACGA GGGGACTGTC CCGACTCCTC TGGGCCCCAC CACGTTCCTG
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Predicted Small Protein

Name NONHSAT046977_smProtein_500:769
Length 90
Molecular weight 10472.1015
Aromaticity 0.157303370787
Instability index 80.5516853933
Isoelectric point 9.41314697266
Runs 14
Runs residual 0.0141000220313
Runs probability 0.0495243142301
Amino acid sequence MSSSLFPSCPEFIFQVNFGMPLANRRGPFRWLGELRILFLVYTVHLHSQSSRRQEPWWVQ
GKATDTPKLPSHCCFNASFTERYMMVLFI
Secondary structure LLLLLLLLLHHHEEEELLLLLLLLLLLLLHHHHHHHHEEEEEEEEEELLLLLLLLLLEEE
LLLLLLLLLLLLLEELLLHHHEEEEEEEL
PRMN -
PiMo -