NONHSAT046977
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT046977 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4700 nt |
Genomic location |
chr15+:69964060..69978037 |
Exon number |
5 |
Exons |
69964060..69964246,69969885..69970095,69971188..69974822,69976635..69977007,69977744..69978037 |
Genome context |
|
Sequence |
000001 tgcagtggaa actccccagg agtttggatg cttcatctct gctgagaccc agtgcctggc actgaaggtg ctcaggaaat 000080
000081 accttctgaa tgaTCGGAAG CCCCTGCCAT CTGCTAAACT GGATCTATGA TGACAGAAGC CGAGGAATGT GAGGTTCATC 000160 000161 TAGAGAGTTC TTGTGAATTT TCCAAGGGAG GCACCTGttg aattcaggca tcggcatgtg acttgatttg gtcaatgaaa 000240 000241 tgtgagagaa gtgacatcca ctttgaggca ggcactttcc gagtgagtat gtacttcccc atgttccccA GTGTGGTTGC 000320 000321 TTAGCCCAGA ATGAGATAAC AGCAACATAG AGCATGACCT GTAATTGCCG TGAAGATGAG AGAGAAACAG ACCTGGAAat 000400 000401 gagccactgc acccagtcaa gaatagactg taaatgtttc ttatcagatt taaagagtct tctatcagta attccaaaag 000480 000481 ggaggagggt ataatgaggc atgtccagct ctctgttccc atcatgtcct gaattcattt ttcaggttaa ctttggaatg 000560 000561 cccttggcca acaggagggg tccattcaga tggctggggg aacttagaat tttatttttg gtttataCAG TCCATCTGCA 000640 000641 TTCTCAAAGC TCCAGGAGGC AGGAGCCATG GTGGGTCCAG GGGAAGGCAA CTGACACTCC AAAACTCCCT TCTCACTGCT 000720 000721 GCTTCAATGC CAGCTTCACA GAAAGATATA TGATGGTTCT ATTTATTTAG TTATCACAAA TGTCACTATT ATCACAGAAG 000800 000801 ACATTAATTT TTAAAAGAAA AGGAAGAAAA TATGTCACAT TTCTGTTTTG TGCATATGCT GATTGAATGA AAAGTTTATA 000880 000881 TCAGATGCCA ACTTAAAATA AGGACATATA AATATTTAAT TGTTTATATG TATGTATACA TTGCTGTATA GACAATATTT 000960 000961 ATCTATACAG TTATAGAGca ctgattctca gctgaggggt gatttttact ttccagggag acatttggca atatcaggag 001040 001041 acatttttgg ttgtcccagc tgagggcttg ggggtactcc tggcatccag tgggtagagg cctgggatgc tgctaagcat 001120 001121 ccttcagtgt acagggcagt ccatattatc tgaactgtgc tgaggttggg agagcctgGC CTGGATGTAC ATCTAAAGCC 001200 001201 AGGAGTTCTG GGGCTGTTTT GTGTGAAGCC ATGAGTGCTG GCATCATTCT TCAGAGCATC ATTGACACAC ATCTGCTTGA 001280 001281 TTCATTTCAC GTCCCCACCT TGGCTGACTC ATCTAGAAGA AACCACAAGT CACAGATCAG CGAGGGGCCA GCCCTCACGG 001360 001361 TCCTTACAAG ACAGCCTCGA TGGCACTGGG GTTCCCCTGG GAACACACAT GGTCAAGCAT AGCTGCCTTG CTCAGCTCTC 001440 001441 AGGATGACAA CTATTTACAC CTAGTGTGCT TTATAGCACA CCTGGGATGG GAGTTGCAAC GGCGGAAAGG TAACGGTGTG 001520 001521 GGAGGAAGGG AGTGAGAAGG GGAACCGGAG AAGGGAGGGC CAGTCATGTT AGTTTTATGA AGATATGACA ATTAGCGCAT 001600 001601 CATTTAAAAC ATTGCTCATA AGGATTGCTT ATGCACAATT TGTCTATATA TGAAGATATT GAGATATGTG ATTTTATAGC 001680 001681 TACAGCTATA TGTAATATAT GTGTGTGTGT GTGTGTATAC ACACATTAgt aatgaggtga aacatttact gtcctaacag 001760 001761 ctggaactaa cattccacat ggaatgggaa ctgactttga gacactttct ggataagtca ctggactgga gagagaaact 001840 001841 tggagggcaA ATGCCCCAGC TGGACTCCCA GAGAATAAGC TAGCTTGTTG CTGAAGATGG AAACCTTCTC ACTTTTGCTC 001920 001921 CTGAGAGGGG AGATTagaaa aaaaaataga aaggaaacaa aaaacagaga aaaagaagga ggaagacaga gtagccagaa 002000 002001 agaTGATGAG ATGCTAGGAT GCTTTATGGG TGGCAGAGCC CGTGAGAAAT GTGTGGTGGG TTTTGGGGAC GGGGTGAAGT 002080 002081 GGGAAGGCCT TTAGGAAGCA GACTGTGGTG CTACTTTGCC ACTTTTCTAA GTGGGAGAGA AAAAAAGAAT GAGAGTGTGG 002160 002161 CCCTAGAACA TTTGTCATGC AGTGTGCTCA GAGCTATATT AGGATGTCTT TCCTGTCCTG TCTGATGCTC TATGTGGCAG 002240 002241 GTTTGAGCTG CCCAGGGAAG AGACTCAGCC TCCAGGGCCC TCTCTTCCCC TGTGCCCTGC TCCATACCTC CATGTGGTGC 002320 002321 ATGAGGGAGG GCCCAGGAGG CTGAGGCCAT GCTGGGGCCC TAAGCTCTGG CCTAACCAAG TGAAGTCTCA GGGGAGACCT 002400 002401 TGAACCATAA GGCAGGGTTT AGTGTTTCCA GCCACACGGA TCTAGATGTT AAGGAAGCTA GGGAGCTCCA GCTGACAGGT 002480 002481 GGGGAACCAG ACTTACTCCA CCAAACGATT AGACCAGATG CCAACTCATT TCCAGATCTC ATTGCCAAAG ATACTAGAAA 002560 002561 AGCCCTTAGG TAAAACAAAG CGAGGAATTG GAGGCAGACA CAAATCCACC AAGTGGAGAA TCCACACACT TGCAGCAATG 002640 002641 ACACTAATGC TTTGAAGGAG GCAAATTTCT CAGACTTGTC ACATATTTAT TTGCAGTTTC AGTCTCTAGA GATTCCAGAG 002720 002721 TCTGGGATCT GGACTGGGGT GAAGGGAGGC ATGGTTTTGC CACAGCCTGC CCTGTACTGC TGAATTCTCC TGCGCGTGCT 002800 002801 CAAGTGCTTG CAAATGAAAG GTCATCTGGG CCTTGATCAG TCGTGTGGCC TGTGGATGGT GAGCAGCCTG GCAAAGGCAG 002880 002881 AGGTCTGTGA GGTGGGGGCA GTGGGGCTCC GTGGGCAGGT TTGCCATGCC TGAGCACCAG GTCCCTACTC TGACAcaggc 002960 002961 acaccacaga gatattgcag gtttggttcc aggctaccac aataaagcaa atatcacaat aaaacaagtc acacaatttt 003040 003041 tttggtgtcc cagtgcatat aaaagttgtg tctgcatgat actgttgtct attaagtaag caatagcatt gtctaaaaaa 003120 003121 caatgtacat accttaatta aaaatacttt attgataaaa aatgctaacg atcatcagaa tcttcaagtc gtcataaaca 003200 003201 ttttgctggt ggagggtctt ccttcagtgt tgatggctgc tgactgatct gggtggtggt tactgaagat tgggatgaca 003280 003281 gtggcaattt cttaaaggac aaaaacaatg aagtttgttg catcaattga ctcttccttt caaaaaagat ttctctgtag 003360 003361 cttttgacaa cattttatcc acagcagaac ttctttcaaa attggagtca atcctcttaa tccctgctcc cgctttatca 003440 003441 actaagtttg atattctaaa tactttgttg tcatttgaac gatgttcata gcaccagtag attccacctc aagaaaccac 003520 003521 tttctttgca tatctgtcag aagcaactcc tcatctgctg aagctttatc ataaaattgc aatgattcaa tgtcatcttt 003600 003601 aggctccact tgtcatttta tgtctctgcc acttctgcag ttacttcctg cactgaagtc tgaagccctc aaagtcatcc 003680 003681 atgagagttg gaatccactt cttccaaact cctgttaatg ttgctatttt gaccacgttc tatgaatcac aagtgttctt 003760 003761 atggcatcta gaaggggaaa tcctttccag gaagatttca atttattttt cctagatcct tccaaggaat cactatctat 003840 003841 gactgctaaa acttttaaaa aattatttct taaataataa gacttgaaag ttgaaattac tctttgagct aagggctgag 003920 003921 attggatgtt gtgttagcag gcatgaaaac aacatcaatt gtacatctct ttatacatct ccatcagagt ttttgggtga 004000 004001 ccaggtccat tggcaatgaa cagtcatatt ttggatgcca tcaagctgag atgtgaagcg gaagtgaggc agaggctccc 004080 004081 ttccttttgt ttggcgcagt tttctgtgag agagcagagg tgggagatga ggggacctct gccccagtgt ttctgcatcc 004160 004161 aagctccagc cttgttgaag gtgagaaaag cagctgtgat ggttttatga ccctagtccc tggcttctga tccctggacc 004240 004241 acagctaagg ggctgtgttc ttgaatagat agtggtgatc tcccaattct ccccgtcctg gctgtgtcac agggagcaac 004320 004321 tctctcagtg ggttggttct gtggtgtttg gagagacatt cctggaagcc caggcaagag tctgctgctc cagtccttcc 004400 004401 agtgcttttg aaaaaaaaaa aaaaaaggaa agaaagaaaa GAAAAGAAAA GAGCTACACT GGTTTCTATC TCCCACTAAC 004480 004481 TGACACAGGA CTTTATAAAG ACAACCAGAG GAGTTGTTAA GAACCATTGA ACTAATACCC TGGATTTAGA ACAACAGAAA 004560 004561 GTTCACAACA CACAAACAGC CATAAAGGAG GTAGAGTGGG TTCCTTTCCC AGTCAGCACT TCCTCCTCTC TGAGAGCTAA 004640 004641 GCCTGGATTC TCATACACGA GGGGACTGTC CCGACTCCTC TGGGCCCCAC CACGTTCCTG |
Predicted Small Protein
Name | NONHSAT046977_smProtein_500:769 |
Length | 90 |
Molecular weight | 10472.1015 |
Aromaticity | 0.157303370787 |
Instability index | 80.5516853933 |
Isoelectric point | 9.41314697266 |
Runs | 14 |
Runs residual | 0.0141000220313 |
Runs probability | 0.0495243142301 |
Amino acid sequence | MSSSLFPSCPEFIFQVNFGMPLANRRGPFRWLGELRILFLVYTVHLHSQSSRRQEPWWVQ GKATDTPKLPSHCCFNASFTERYMMVLFI |
Secondary structure | LLLLLLLLLHHHEEEELLLLLLLLLLLLLHHHHHHHHEEEEEEEEEELLLLLLLLLLEEE LLLLLLLLLLLLLEELLLHHHEEEEEEEL |
PRMN | - |
PiMo | - |