NONHSAT044223

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT044223

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3910 nt

Genomic location

chr15-:60820272..60884716

Exon number

2

Exons

60820272..60824050,60884586..60884716

Genome context

Sequence
000001 agctgctgct gtggctcggg cggcggcggc gcggcggcgg cagagggggc TCCGGGGTCG GACCATCCGC TCTCCCTGCG 000080
000081 CTCTCCGCAC CGCGGCTTAA ATGATGTATT TTGTGATCGC AGCGATGAAA GCTCAAATTG AAATTATTCC ATGCAAGATC 000160
000161 TGTGGAGACA AATCATCAGG AATCCATTAT GGTGTCATTA CATGTGAAGG CTGCAAGGTA AGCCTTTTTA ATTGTTGTTG 000240
000241 TTTCTATTAA TGTTTGTTAG AATATATCTT TGTGATTTGT ATGTCTCCAC TTATGTCTTA AAATTCAACT CCTTAGAATT 000320
000321 TTGAATGATA AGAAATTACA GGATAGAAGA AATATTTTGG TGTTAAATTA CAATTAAAGA AGTTATATAT ATTTTTACTC 000400
000401 CTTCCTTCAA AATAATAGGA GATTACAAAA AGGTATTTGA GCATTGCTTG TTTATCACTT TCAACCCCAG AGTTGAACTC 000480
000481 ATGAGCAATC TCTGTGGCAA TCTTTTTTAA AAAAGAGCTA ACTCCAGACT TCTACAATGT CCCTGTCATA AGCTTATAAA 000560
000561 AAGACATCTC CAGTAAGTTT AATTGGAATG TCACTGAGTT GAGTCTTATT GTTAGCACAC ATAATGTTAA CACATCTGGC 000640
000641 AAAATTGTGG GAAAGCTAtc aggaagacct gagttccagt cctattgcct ccacttgtcc atattgtttt gaatgtgtct 000720
000721 taatctcttt gtcactcagt tgcttcattt ttaaagtggg tataacacct gatctttcta ctggttagga ctattccaag 000800
000801 aatagaagga gaacctgtac ataaaaaagt ccttacaaac agaaaagtgc tatttaactc taaatattat cagtattATT 000880
000881 TCTGCTATGA CTATTTTATT ATTTCTGACC TTGGTCATGG GGCAATGTGT ACAGCACATG CATAATGTGC AGATGAGAAA 000960
000961 CAGAGATGTT TATCCCAATA ATTCAAGACC CCCCAAGCCC AGATTACCTC TGTTATTCAA ATCTCAATTT ATTAAGATTT 001040
001041 AAATCCTCAT GCTTATATTG GAAGGGCCTC GAGACAGCTT ACAGGATAAA ACAGTGCAAA ATAAACAGGA GAGAAGCTAT 001120
001121 TTAAACATGC AGGAGGCCTT TGAGACAGCC GATTGCTACA ACCAGGCCTG AATCAGCCCT AAGGCTTTTT GAGGCTGAGG 001200
001201 CAAAAAATAA AATCCACGAA TTTGGTTAGC TTTCCTTTCA TGAAATTAGA AAATACAATG TTGTAAAATA CAAAATCACC 001280
001281 TATAGACACA AATGACTACT GAGAGACTTC AAGGAAATTA ACCTTATAAT TTCCTTAATT CTTCATTTTA CTGTTAGTCA 001360
001361 TGGTAACATT TGCTAATTTG TACATGTACA GATGCTTCAT GTTGATCCCA TCTTAGCAAA GCTTCAGATT TCCGCATACT 001440
001441 ACAGAACCAT CTATGCCCTT TACTTCCAAA ATCTGCCCTC CCTCAAAATT AGTTGACTAA TTAAATAAAT TAAGCAAAAT 001520
001521 GAGAGgcccg gtgtagtggt gtgtacctgt agtcccagct actcagggaa gacagctgca ggtttatcac ttgagtccag 001600
001601 gagttcaagg ttacagtgag ctatgatcac accactggac tccagcctgg gcaatggagt gagaccctct ctccaaaaaa 001680
001681 gtaaataaaa aTAATGAAAA AACAAAATGA AATAATCTGT CTGGTCTGTG CCATCCCAGG TTATAAGgtg agagtgatct 001760
001761 gcctgtgacc actgtcatcg cattgatttt tggagctgat ttggctgacg tggccaggta gccattgctt ttcaccctca 001840
001841 ccctgtcttg tgttctgcct cccaaatctg tgtccctggt agacatgtca tggcctttct caatagaggG TTTATAGACT 001920
001921 GCAGTGCTTG CCTGCTGGGA GTTCCAGTGC TTTTTGTGCA TTGCGTATCA CCTGGGTGTC TTCTTAAATG GACAGGGTTC 002000
002001 TAGGCAGCAT CCCGGATACC AGTTCACCAT TTGTCCCTTC ATTCTGCCCA AAAAACTGAT GGCTTCCTCT GAATCTGTCA 002080
002081 GTAAGGCAAG TGATTATCTA GGAATTGACA GAAGTGATTA TCTAGGAATG GAGTCTGGGG AAAGGACAAG GTGGGGGTAG 002160
002161 GGGCTACTTC ATATGAAATA CCCCAACAAT TTGGAAGATT AATTAACAAC ATGCTATTGA GTAAAACCTA AGTTGACTGA 002240
002241 GTACCATGGC ACAAACAATG TGAATTTTCT TTTTACTCTT AATATTTATC ATGACAAAAA TAAAAGCGAT AAGAAAACAA 002320
002321 AAGGTATCTA TTATTCCAAA GTTGCCATTT TTCTAGATTC CCTTCCAGAT CTTGTCTGCA TACCTCCTCA GTGCCAAAGT 002400
002401 GGTTTTCAGT TATCTGTGGC TCTGTTCCTC TGCTCTGTTG ACTTTATCCA ATGAAAACCA CAAAATAAAT AAAACATAAT 002480
002481 TTTATTAACA GATTGGGCCT ATGCCTAGCC AGGGACTTGA ACAATGTTTC ATGTTTATAT TTGATACATA TACTCTTTGT 002560
002561 TCTCCATTAT AATTTCTCTC TGCTATAACT AACACTTTTA TTCCTAGTTA TAAAAATAGA AGTCAAAAGA CTTCTATTTT 002640
002641 TGCCATTTTA TGTTAATTAT TTATCATGTT CTAACCAGGT AAAGGTGGTT CTATCATGAT CAATTGTAAA TAACTTTGCT 002720
002721 GAGATAGTGT AATTAAACAT AAGAAAAATT TCACATTAGA CATATCAAAT AGATATCTAA TGAGAGAAGA AAGGTGATCA 002800
002801 GTCATCTTCT GAGCTAATCA TTTTGTGAAC GTATTTTAAA TTGCATTTTT AAATTAACAA GCTGACACCA TAAGAAACTA 002880
002881 GAGGACCTGT TTAATTGCTG AAATAATTAT TTTGGCACAT AGTTGCTAAG CATTGCACAT GAACAGCAAA AATGGTAGAA 002960
002961 GCTTTAGTAG CTCTTTCTGT CATTTCTGGC TCTTCCTAGT TCATCCTCTC CCCAACCCCT TTGCTGTCTG Tagagagaca 003040
003041 gcaggtgcca tgcttctgct ctgactctgg aaccagactg tccgagttga aatcccagct ctgctattta ccagcttgag 003120
003121 cacctatacc actgctctgt gcctcagttc ccccatctgt aaaatgagga ctgtaattgt aataacttca tagggttgtc 003200
003201 acatgcattt aaggaaagta cctggaagaa tgccagatgc atcacaagca cttactaagt gttagctgtt gttatCATTG 003280
003281 TCATTACTAG GCAGACTTCT TGGTGGCTTG GTAATGCTGC TCTGTATAGT CAGATATTAT TTCTGGGACA TCTATGGATA 003360
003361 TAGTCTTGAT TGTTGTGACC ATTTGCAATG TGTTATGTAG AATCTGCCAA TAAAAAAGAA TACTATGAGC ACTCCCTTGG 003440
003441 GACCAAGCac tatgtaagca ctgtaaggga tccaaagaca tagaagacca catctttccc tcaagcagtt tatggtctag 003520
003521 ttgtagagat gaggcctgtg tagggaaagc taaatagcaa tgcaagaact aatatagagt aaggccacaa tctatgatat 003600
003601 acataagaag cacatatagg ctgggcacag tggctcacac ctgtagcccc agcagtttgg gaggctgagc tgagaggaag 003680
003681 atgtgagcac aagagttcaa gaccagcctg agcaacacag caagactctg tctctacaaa aaaattaaaa ataaaaaaaa 003760
003761 ctggctaggc atggtggtgt ttgcctgaag tcccaactac tcggaaggct gaagcaggag gattgcttga gcccaggagt 003840
003841 tcaaggctcc tggtgagcta tgatggtgcc actgcattcc agcctggcaa cagagcaaga cccctgtctc
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Predicted Small Protein

Name NONHSAT044223_smProtein_623:787
Length 55
Molecular weight 5946.859
Aromaticity 0.111111111111
Instability index 44.4740740741
Isoelectric point 4.50103759766
Runs 7
Runs residual 0.0330623306233
Runs probability 0.0771696065813
Amino acid sequence MLTHLAKLWESYQEDLSSSPIASTCPYCFECVLISLSLSCFIFKVGITPDLSTG
Secondary structure LHHHHHHHHHHHHHLLLLLLLLLLLLLEEEEEEEEELLLEEEEEEEEELLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooo