NONHSAT041921
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041921 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8797 nt |
Genomic location |
chr15+:41576184..41598727 |
Exon number |
6 |
Exons |
41576184..41576310,41577423..41577563,41578209..41578300,41589002..41589514,41590239..41594189,41594755..41598727 |
Genome context |
|
Sequence |
000001 CCGCAGGGTT GGCCACCTTG AGAAGCTGCG AAGATGGCGG AGTAAGGCGT GCCGCTGCAA ACTGGCCTCT GGGCCGGGGG 000080
000081 CGAGCAGCCC CCGGGAGGCC GAGTGCATCT GTTGGACCGT GCGAGGTGAG AAGAAAAAAA ATATCGGCCA GAGGAGAGGA 000160 000161 ACTAACCGAA CATTCTTCCT CCCTACCTTA TAGAGGGGAG TGGTCATCTA CACTAAAGCA AAGTGTTAGG CGCGTCCGTG 000240 000241 CGAAGAGACC ACCAAACAGG CTTTGTGTGT TCCTTATCAC AGGAAGAAAA TTTTCCTTGA CCTTTAGGTG CTTTTATATT 000320 000321 CATCTCAAAA ACAAAATTCT GAACTCAGGA CTTGGCAAGT GAGGTGCAAG CGAAGATGCA GTGCTACCTT ATTTTTCATT 000400 000401 TTTATTTTTT GGAGACAGAG TCTCACTCTG TTGCCCAAGC TGAGTGCAGT GGTGCAATCA TGGCTCACTG CAACCTCAAC 000480 000481 CTCCAGGGCT CAAGCGATCC TCCTGCTTCA GCCTCCTCCA AAGTAGCTGG GACCACAAGA GGGCACCACC ACGCCCTGCT 000560 000561 AATTTTTTAT TTTTTGTAGA GTGGGGTCTT GATATGTTGC CCAGGCTGGT CTCCAATTCC TGGGCTCAAG GGATCCCCCT 000640 000641 GCCTCAGCCT CCCCAAAGTG CTGGGATTAC AGGTGTGAGC TGCTGCACCT GGCTCAGTGC TACTTTAAAA CACAAATGTG 000720 000721 GCCGGGCCCA GTGGCTCACG CCTGTAATCC CAATACTTTG GGAGGCTGAG GCGAGTGGAT CACTTGAGGT GAGGAGTTTG 000800 000801 AACCCAGCCT GGCCAACATG GTGAAACCCC GTTTCTACTA AAAATACAAA AATTAGCCGG GTGTGGTGGT ACAGTGTCTC 000880 000881 TATGTTGTCT CCTAGAGTGG GTAGTCCTGC TTCTTTTACC CAGTTACTTT CCCGTTTTTG AAATGTGGCT ATCACTTCTC 000960 000961 TACACATTAC CTCCATGATT TGGAATGGAA AAGGCCACTT TTCTTTTTGT TCTGCCTCTC AAATTCAACA CAGAGGAGCT 001040 001041 CCTAGGATTC CAGTTATCCT GCTAACATCT CCAGGAAGAA AGAAGCAACT CACATGGGTC TTTTGCTGTT TGCTTAATTA 001120 001121 TAAAGACATC ATTTTGCAAG CAGAAGGCTG AGTTTCATTT GAAACAGGTG CTTAGGTGGT GGTATTTGTG AATACTTTTC 001200 001201 ATTCCAAGCA AGAAGACTAA AGAAGTAGCA AGTATGAATG ACTTCAGGGT TTAAAAAAAA TGTCTTCCAG TTTCAGCCAC 001280 001281 TACCATGATA AGCACAGTTG AGACTGCAGC AGTAAATTCC AAATATGTGT TTCTAATTTG ACGTGAAAGA TACTAAAAAT 001360 001361 TTATATTTGT ATATTTAAAT CCTGGCTCAT CCTGTGACAT AGATTTACTG AATAGGAACA AAGGCCCAAT TTTAAACAAA 001440 001441 AACCTAGGCC GGGTGTGGTG GCTCACACCT GTAATCCCAA CACTTTGGGA GGCCAAGGCA GGCAAATCAC CTGAGGTTGG 001520 001521 GAGTTTGAGA CCAGCCTGAC CAACATGGAG AAACCCCATC TCTACTAAAA ATAGAAAATT AGCCAGGTGT GGTGGTAGAT 001600 001601 ACGTGTAATC CCAGCTACTC GTGAGGCTGA GGCAGGAGAA TTGCTTGAAT CCGGGAGGCG GAGGTTGCAG TGAACTGAGA 001680 001681 TTGCACCACT GCACTCCAGC CTGGGCGACA GAGTGAGACT CCGTCTCAGA AAAATAAAAA ACAACTTTGG ACATAGAGGA 001760 001761 GTTGGGGGCA GAGGGGGGAG GATGAGAGAA TTTTCCATGT AACTCCTTTT CCTTAAGAAA AAGAAGCAAA AATCCCTCAT 001840 001841 GCAGTGCCAT CTGACTTTAT GGTGTTTCAC ATTATATAGT TACTTTTTTT AATAAACGCA TAAGATTAAC TCTTCCTGCA 001920 001921 ACCCAAGGTG GATACTTGGA TGTTTGATTT TTATTTATTT ATTTATTTAT TTTTTGAGGC AGTCTCTCTC TGTTGCCCAG 002000 002001 GCTGGAGTGA TGCGTGATTT CTGCTCACTG CAGTCTCTCC CACCCGGGTT CAAGCGATTC TCCTGCCTCA GCCTCCCAAG 002080 002081 TAGCTAGGAT TACAGGCGCG CACCACCACG CTCAGCCTGA TTTCTAGGCT GAAAAGGCTG GGACTCAGGT ACTTTCCCCA 002160 002161 GTTGGGACTG AACTTTCTCA TCAGAGAATG GGCCTCAGAA GCAATGTTCC CAAACTTGTG GTTGGGTCAT CGTGGAAAAG 002240 002241 AAACCTCAAA TAAGAAAAAT AATTACAATA AGAAATGGAT TTTCTTTTTT CCCACAACAG TTATACATTA TAAAGAACAG 002320 002321 ACTGTCGTAG AAAACTGTCT TTGCTTCCAA ATCAGCAGAG GACCATTGTA TGTATTGTCA GGTCTTTATA TAAGAGTGAA 002400 002401 ACCTTTATTT ATGCTTCTTG TGAGTAGAGA ATAAATTTTA AAACTAATTA GATGAAATTA AGAACAGAGT ATTGGAACAT 002480 002481 CTCTGTGTTT TCCGGAATGT TTACTCAGGT CCATGAATGC TGTGATGCTG GGAACTTAGG GAAGATTCAC CAAAATTTGA 002560 002561 GAGTGATAAA AATGGCCTAA AATGGGAAAT GGTGAGCACT CTTATTATTA GTGAGATTGG TCAATCAGCC CATTTGAAAT 002640 002641 GGGTAAAAAA TACTTTCAGT AAAATAATTA CATATTATAT ATAAAATATT TCTTTTTTTG AGGGCAGCTA CTGAGTGATA 002720 002721 AAAGCATAGT AGAAATCACT TTGGTTAAAA GTAACTCAAA TTTTTCTCTT AAGTAATCTA CCAACTTCCT GATGTTTTTC 002800 002801 TTTAATATTT TGGAACTGTT CAAGACAGAA TGGAGCCTAC ATATATGGTG TTCCACTAGT ATGTTGAAAA TGTCATATCA 002880 002881 TGGAGAATGG AGACACCTTC CAGGTGTCTG TTAAACCCAT CTTCTCTGTG TACTTCTGGC ATCTTTTTTG GTAGGATCAT 002960 002961 TTGGCAGGGG GTAGAGTACC TGTACTTTTG GCACCATTGA AACCAGCTCT GGCCCACTTG TTTGAATAGC TATCAGACTC 003040 003041 AGCGTCTCTA TATGCTTTAT ATACAGTTGA GAGAACCAGT GTTTAATGCT CTTGAAATTG TATCTTCCAT GCTTCAGACC 003120 003121 AGATGCATTT AACAAAATGG ATATATTCCA GCTGTAGTTG CCCAGTGTTT ACTTAACACA TCTACATTTT TTTCTTGTCT 003200 003201 ATTTTGGTCC CCTTGATAGG AAAAGCTATA ATTTTAGGCA GGACTATACG TCGATTTGTA GCCATGCTTC CTTCCTTTCC 003280 003281 CTTGCTCATC CATGTTAGCT GGCAGTTTTT CTTTTGAAAA GTTAAAACCG GGATATGTGC AATAGAAATA TATATATATA 003360 003361 TATGTATATT TTAATACTTG TGGACAAATG TTACAAGTTG TTTAAGAACA ACAAAATCAC CAATGTCTTC CATTTTGAGA 003440 003441 TGTGTATAGT TTTGTAAGCA TTAGTGCTTG GTAGCATATT GTAGTGCCAT GTTAGGGGTT AGTGCATGAG TCTAGTGATT 003520 003521 TTAAACTTCA GGATGAATTA TTGATAATAA CAAATAGTGT AAAAAGAGTG GAAAATCTAA ACCTTTTCTT TTTCCATAAT 003600 003601 GTCTAAATCT GTTATATTCT TCCTGGGGAA AAGAGATTAA GGCCCAAAAG ACTCATTTAT GAATAGAAAT GTGGGGTCAA 003680 003681 AATCTGAGAT ACTATATTTG AGGACATTTC AGCTTTCCAT AAGGTATCTG GAAACCAGCT GTCTTTGTGT CTTATGAAAC 003760 003761 CTCAAGTCAA AATGAGACCG CATTTAATTA TTCTGCTTTG CTCTTTTTTT GGGGTGGGGG GGAGATAGAG TTTCACTCTG 003840 003841 TCACCCAGGC TGGAGTGCAG TGGCACAATC TTTGCTCACT GTAACCTCTG CCTCTTGGGT TCAAGTGATT CTCGTGCCCC 003920 003921 AGCCTCCCGA GTAGCTGGGA CTACAGGCAC GTGCCACCAC GCCCAGCTAA TTTTTATATT TTTAGTAGAG ACGGGGTTTT 004000 004001 GCTGTGTTGG CCAGGCTGGT CTCAAACTCC TGACCTCAAG TAATCCACCT GGCCTGCTCT TTTCATGTCT TAACATGGCA 004080 004081 TGTCTTTTAG TTTCATTATT TTCCTACTCC TTGTATGTCA AGAAATTACA TTTTGCATGT CTTATGGAGA TGCTGTTAAT 004160 004161 TGCTTCAGTG AGTGCTTTTC TAATCTGCAG ACCATTTACA TTTCCTGTTT GCAGCATGCT GTGTGCAAAC ACTCAGTAAT 004240 004241 TTGGAGTATT CAATTATTTG TTAGGGCTCT TCCTATTTCC AAATGTGCTG AATTGTCTAT TGATGGGATT TTCAGATCTT 004320 004321 TTCATGAGAA CTGGAAATGT AGCTGGGTGG CACCTACCTA GGTTGCTACG TAGTGAGTAG ACTTTCTCTT GGGTATAGTA 004400 004401 AGCCTCAGAC AGCTTTCACT TTTATCTACT TTACTTGTGG AAATAAAACA GTCATTTTGT TCTGAAAGAA TAAGATAGCT 004480 004481 TTCTGTAGAG AAGGAATTCC TACCTCTAAA AGCTGCCTTG AGAACTCAGA ACTGGCAGTT TTCTGAGGTG ATTTTTAAAT 004560 004561 TTCAGTATTA GGGAGAGTCC AGCATTTGCT GACACAGATT CTACATAACT AATGTATGAT AGCAAATGCA AAACTATTAT 004640 004641 AATGTGGTGT ATCTTGCGCA TACACAGGTT AGAACAAGTA GACTCTGGCA GCAGATCTCC AGAGACCCAA GTTTAGGTTC 004720 004721 TCATAGTGTA TTTGAAGTAG TTATACTCCT GGCTTAAGTA GTTTAGTGCC TGGGAGAATC CATTACTGAA AAGCATTTAA 004800 004801 CTTAAAAAAA AAAAAAAAAA AAAATTTAGA ACAGTATGAA TGTATATGAA TTTATCTTTA TGTGAGAAAT AATCTTTTTT 004880 004881 GTAAGTTAAA GGTTAAAGAC CCTGCTTGTT TCCTAAATCA GAGGGTTAGA GCTGTTGAAA TTAAACCTTT ATAGTGCTTA 004960 004961 ACCTGGAAAC AAATGTACTA CAGCCCCACT GAAGCCGCTC TATGGGTTTT TTGCTTACGA TGTTTTAGCA ACAGGCATTT 005040 005041 ATTTTGTAGA ATGGTATACT TTCTGCTTTG TCTCCTCATC TTTCTCCACT GGTTTCCTGG GTACATTTTT TTTAAAGGGA 005120 005121 GAGAAGTTTG TGAGTTTAAT GTTTTAAAAA AACTCCCAAG AACATGGATA AGCCGGATTT CTCTCATGCT TATGATTAGG 005200 005201 GAGTTAGGAT TTAAAGATGC AAAGCAGAAG GACTGAAAGG AATAGCCAGT GAATATGTTT CAGTGGGTGA GGTGTGAAAC 005280 005281 CTTGTCTAAT ATAGATGTGT CCTATGGCCT GTGACTGCTT ATTCTTTATC AATGAGAACT CAGCAAACTA GTTTCTTTCT 005360 005361 TGATCTGAGG AACCACACAG CTCACATCAG AATATAATAG TGGAACTAGG GTGACTTCAC TCCCTTTCAC CTGATGTCTA 005440 005441 TCTTGGCCTT TTAGCACCTT GACTATCCCT GAAAAGACTG GGTCTTTGTT TTCCCAGGGA AAAAACGAAG TGATGTAGAT 005520 005521 CTAAGAAATA GTGCCTCTTT AATATTTAAT TCTTACATGA CAACTAACAC ACAGGGAAAA GGCTATGTTA AGTTGATTAT 005600 005601 AGCTCCTCTT AAAATGTCCT ATGCTGTCAG TTGGTCTTAG AGACATGGGA ATAACCAAGC AATATTCAGA CATCTGCACT 005680 005681 ATCTGGGGAC AGCGCTACAT AGTACAATGA TGTCAGCAGT TCAGTTACTT GGAACAATTA AAGATTACCC TTAACAGCCA 005760 005761 TGTTAATACA TCTAAATGCT AAAATATACT ACGAGTTTTT CATAGTCTTG AAAGTATACA GTTAATTACT TTTCAAAGTT 005840 005841 ACTGTGGTCT CATGTTTACT CTTCTTGTAT CTGTGATATG CAAAAAGATG AAGACTCTTG GCCTCCAGGA GTTTACATTC 005920 005921 TCATGGTGCT GTTGGTTCAA GCAGATTGCT TTAGTTTATT AATGAACATT GCTTGGCTAT TAATTATATC CTATTTGGAA 006000 006001 GGATCCCTTG GTGAACAGTT TTAAAAAGCA GAGGGCTGTG CTAAATTTCA GGGTATTGAT AGCTTGAGTT TACATTGTAT 006080 006081 TAGCCCTGCT CGTTATCATT TTTTTCCCCA GGGAGCTATG CAGGTAATGC TCATTAGCAT GAATCAGAAA AGAAACCATT 006160 006161 CTGCCTAAGA GCATCTTAAC CATCCCCCTA AACCACCTAT GCTCTCCTGT TATAGTTGTC AGTAAATCAC GAAGAAAATT 006240 006241 AACAGCTCCT TAAGACTCTA CATCCCTCAA TTCTCTTTCT TTTCCCAGAG TTTGTACATC ATTCTCTACT CAGATGGACC 006320 006321 AGGATTTGCA TATAAGCCTT TTAAAACTGA CTAGTGGTCC TAATTTTAAC ATTTTTGTGT ATGACTCCTA TCCCTTTTCT 006400 006401 GAAGCAGCAT TGTGATAGAT GTGGAGCTTC TACCTGCATT TCTAAGCAAT TATTAACCCA ACTTTTGAGT TGAAACTTGC 006480 006481 ATGGATCCTT GTTATGTCCC GTAATTCCTC TGAATCAAGG AATTTATTTT GCATGCTTAT TAAACTCAAA CTGGGTCTGA 006560 006561 TTGAAAGTGC AAGCAATAGT GACAGGACCT TAACTCTGGT TTTAGAGTAC GAACATTCTA ATGCATGACT CAAAATGTCC 006640 006641 AGTGTTGTGG TTACTAGTTA TTTTATATAT GCATTTGTTA ATAATGAAGC AATAGAGACT AAGACCAATA GCTTGAATAT 006720 006721 ATTCAGATTA TTTTCATGTT TTAATAAAGG ATTTTTCTTA CTTCCATTGA AAATGGGAAG TAGAAGATAA ACAGGGGCAA 006800 006801 CCACAAGACA TTCAAACTGT CAGGACTAGG GCGTAGCAGT GCCCACCCTC TAACCACTTG CCTGGTTCCA TTAGTCCCCA 006880 006881 AGCATGTTTG AAAACAAAAG ACACAAACTA AGCATGCTGA ATAAAACTAG CTGCTATGGC TGTAATAATC AGAAAGGTGC 006960 006961 AGAGTTTCAG AAAGAGTAGG AAAGTAGGGA ATGCCAGTAT GGAGTATGTA AAATAACTAG ATATGGATAT GGGGTTTGTT 007040 007041 TATGATATGC TTTATGTAGA CAAAGTTTGA GGTCTTTTAA AACTGGGATT TGAGTTGAAA AGAGTCAGGA TGCACATATT 007120 007121 TCCACTATTT CAGGATTTTC AGATGACTAG GCACATGTTG TGGATGATAC TGGTACCAAC TACCAATGAC CAACTATAAA 007200 007201 GTACCCCTGC AATAAGGGAG ACTTCCTTTT TGTAGAATAG TCCTGAAAAT ACTGACAGAT CTGTGGTTAG TTTGTTATTT 007280 007281 TATTGCATAA AAAACAGTTT AAACAAATTT TATAGCCAAA GTTTTATCCT TGATGGGTTT GGCCAGACTG CAATTTCTTG 007360 007361 ACTAAAGCTT TTAATGCCAG GTTAAACAGG AGAAACTTTT TCCACTAGAA GAAAATCCTT GCTATCTATT TTTTCCAATA 007440 007441 GAAGAAAATC CTTGCTATTT ATTTTATTTG ATGAATAAAC AAATTTATTG CAGTAGCTTA AAAAAATTTT TTTTTTAAAC 007520 007521 AGTCTCACTC TGTCGCCCAG GCTGGAGTGA AGCAATGTGA TCTCAGCTCA CTGCAACCTC CACCTCCCGA GTAGCTGGGA 007600 007601 TTACAGACAT GCACCACCAC CCTCAGCTAA TTTTTGTATT TTTAGTAGAG ACGGGGTTTC GCCATGTTGG CCAGGCTGGT 007680 007681 CTTTAACTCC TGGCCTTACG TGATCCGCCC CCCCTTAGCC TTCCAAAGTG CTGGGATTAC AGGTGTGAGC CACTGCACCT 007760 007761 GGCCTGTAGT AGCTTAAAAT TTTCCTTGAG AAAATTCCTG ACTTTAAAAA TAACCCTTAT ATAAGTACAA GTGATTGTGA 007840 007841 CAAATGACGT AAAAATGGCA TTCATGATGT CTGAAACAAG CCTAAATAGA ATTCAAGATT AGACTAAATG ATTTTCACAA 007920 007921 AGCACATTCA AGGTTTTACA TTCTATGATT GAAAAAAATT TTTTGAAAAC TTTTTATTTC ATTCTTTCCT GTAGGATTTT 008000 008001 GCTACAAATA ACTTTGGGAA TGAATAAAGT GGAATGGTAA CTTTCCAGTG GTTCAGAATT GAATTAGACT TCTTGTGACT 008080 008081 GTGATGTTTG GTTTCCATTG AAATATATGA AGTGAGATGT CATATCCTGA ATATAGTTTG TCTTCCCCAA TTACTTGATA 008160 008161 GCATGTCTGT CAGCCAGTAA AGATTAAGAA CAGAGTTTCT CTAAATTCCT CCGATTATTC CACTAAGGCA CATTAAAATA 008240 008241 CTTAATTTTG GGAAACCAGA CATCACAGAT TTCTCCATGA AGTCCTAAAT CTTCTTTAAA GTCAGAATAG GTATCTTAGT 008320 008321 TACTGACAGT ATTCAGGTTT TTTTCTCCCT TGGTGATATG TCATTCCATC AGTGAAAAAA TATTTTCTCC CAGGGATAAG 008400 008401 AAAGGTATTC TGGTAATACA TTATCATCAA TCCTTAAACA GTAACAGTCT TGGCACTTAT CACAAAACCG ACCCATTTCT 008480 008481 TATAACCAGA AAGATTATCT TAGACTGTCC TTCACATTAT ACTTTACCTA CTGCCTTGTA AGAATAAGAG TTGCTCACTG 008560 008561 TGTTTACTTG CTGTCCTCCA TATTCTCCAT TGCACCATTG GTGTATAACG TTAAGAGTTT CATTGAATAT TATTTTAAGT 008640 008641 ATTACAAAAG GCAGCTTGCT TCTTAATCTA TGCATCTTTG GGGTTTTTGA AGAAATTTAA TTCTTTGATG TAAAAAGGAA 008720 008721 CTGTTAAAAA AGTTGGAAGC TCTGCACCTG TGTATATATA TATTTTAGCA ATAAAGCAGC ATGGGCTGAG AATGCAC |
Predicted Small Protein
Name | NONHSAT041921_smProtein_4079:4360 |
Length | 94 |
Molecular weight | 10668.437 |
Aromaticity | 0.150537634409 |
Instability index | 51.5913978495 |
Isoelectric point | 6.23040771484 |
Runs | 16 |
Runs residual | 0.0411190760653 |
Runs probability | 0.0347387829006 |
Amino acid sequence | MSFSFIIFLLLVCQEITFCMSYGDAVNCFSECFSNLQTIYISCLQHAVCKHSVIWSIQLF VRALPISKCAELSIDGIFRSFHENWKCSWVAPT |
Secondary structure | LLHHHHHHHHHHHHHEEEEELLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHHHHH HHHLLLLHHHLHHHLHHHHHHHLLLLEEEELLL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | TTTTTTTTTTTTTTTTTTooooooooooooooooooooooooooooTTTTTTTTTTTTTT TTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiii |