NONHSAT040875

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PWRN2,prader-willi region non-protein-coding RNA 2 of 5128 bp,located between NDN and C15orf2.

Contents

Annotated Information

Name

PWRN2: Prader-Willi region non-protein coding RNA 2(HGNC nomenclature)

NCRNA00199, "non-protein coding RNA 199"[1]

Characteristics

Physical maps [1].

PWRN2,prader-willi region non-protein-coding RNA 2 of 5128 bp,located between NDN and C15orf2 in 15q11.2[1].

Regulation

PWRN2 was found to occur in five copies (sequence similarity of 93–97%) [1].

Disease

Prader-Willi syndrome

Expression

PWRN1 and PWRN2 are derived from testis specific cDNA libraries suggested that these transcripts are abundant in this tissue and low in other tissues.[1]. For PWRN2 the following primers were used,

Primer Sequences
BI561478-F1 5'-GCCCTTTAGTGGGGATCTGT-3'[1]
CD557156-R2 5'-AAGCATGAAGGCTTGGACAT-3'[1]

Allelic Information and Variation

PWRN2 is expressed only in testis and is biallelic[1].


Labs working on this lncRNA

  • Institut für Humangenetik, Universitätsklinikum Essen, Hufelandstrasse 55, 45122 Essen, Germany[1].

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Buiting K, Nazlican H, Galetzka D, Wawrzik M, Gross S, Horsthemke B. C15orf2 and a novel noncoding transcript from the Prader-Willi/Angelman syndrome region show monoallelic expression in fetal brain[J]. Genomics. 2007,89(5):588-95.

Basic Information

Transcript ID

NONHSAT040875

Source

NONCODE4.0

Same with

PWRN2, NCRNA00199

Classification

intergenic

Length

5128 nt

Genomic location

chr15-:24409926..24415053

Exon number

1

Exons

24409926..24415053

Genome context

Sequence
000001 GGGCTTTGCT CCACTTGGAG TCAGCTGATT GACAGGAGGG CATCTGAAAT TGAGAGGAGA TTTCAGGACG TTTACCCAGC 000080
000081 CCTTTAGTGG GGATCTGTCC GGGACTGTGC AGTCTGAACC TGCAACTGTA AAAGGTACAA TATCTACATT TAGGCCCTCA 000160
000161 TCTCTGTCTC TCTCTCCTCC TCCTCCTTTC CTCTGCAGGG TGATCTGCAT AAGCCCCACT CCATCCAGGA TCCGGCCCTG 000240
000241 GAGGGAAACA GCCTCCACTG CCCTAGCAGG GTCACTCTTT TTAGGGCCCT GGAGTACTTC TCACAGCTGT GCCAGTTTTT 000320
000321 ATGGGGAAAG GAAGGATGTG AACAATTCCA TAGGTTATCT AAAGGGCTTG CCACCATGCT TATGGTGCTT AATGTTGTTT 000400
000401 ATGTGAAAAA AAGCTTAACA GCATATGGGA TAAGTATTTA GGCAGTCCTG ACTCCAACCC CTCTGCCCTT TTTATCTGCC 000480
000481 TAATTTACCA TTTAATTTGT TGCCATTCGG TTACCATCTA CTAGGGTACT AAGGACAGCA GAACATGGAC TTGGGATGAA 000560
000561 GTTGATGTGC TGGTGGGCCG GGGCAGGGGG TGGAGCGGGG GCAGGGTGGT GGTGGGGGAG TGCTGTGCTA GCTGGTGCTA 000640
000641 ATCACTAGCC TGCCCAACTA GTTTATTCTC TGGTCTCTTT GGCTGTCCCA GCTGTGTGGT GAGATTTCCA CAAGTCTTCC 000720
000721 TTTTAGGACC ATGAGTGGTA TTAATTGCAC TGCTTATATG AAGCTAGAAA CGTCTTTCCA ACCCATAGAG GTCTGGTTGA 000800
000801 AGGATATGAG CAGTGCAGAA CAGAAGAGAG ACAACAAATA AAAGTTGTCA TCACTGTTTC ACAGGGATGA GCAGTATGGA 000880
000881 CATAGAAACC ACGTCAGGAG GGGAAACAAG GTCTCTATCA CCTCTGGGAG GCCCCTGGGG CATACCCTAG CTAACTGTAG 000960
000961 AGCCTATAGC TATCAGCCCA TGACTAACAG AAAAATGGTC TATTATTGCA GTGCTGTTTG GACTGTGGAC AAGTTAGGTT 001040
001041 ATAAATTTTG ACCTCTGAAT GGACGCAACC AATATTAGCC TTTAATGCAG TTAGACTCAT TTTGTCAGAG GTCTGGAAAA 001120
001121 TTAGGAAAAA CTACCATATG TCCAAGCCTT CATGCTTTTC GAAAATCAGG ATTCATACCA TGAGGGAAGA TGCCAGCTGC 001200
001201 TAGCTATACC AAAGGACAGA ATGGAAAAAA GGCTCTTCAC AAGCCAGAGA GCCAAACTCA GGCAGAAAGC AATGAAGAAG 001280
001281 AATTAGGACT TTTAAATGTC CTACACCCAA GCTGTTTTAG CAGCTCCAAC CACCACAGCC AGAACGCACC TGGCCTCTGC 001360
001361 TCCACCTCAA CAGCTCCCAC TGCAGTACCA CCATACGGGG CCCTTAGCAC TGGCCTCTGC GTTGGACCGG ATTGCCTTGA 001440
001441 TGCTACCAAG TGAGGCATCA GACCAATAAG AGGGAGCTAC TCTGCCGCCT CAGTATAATG AGAGAACAGA GACGGCCTCT 001520
001521 CCCTCCAGTG CTTGACAGGG AACATGATTT AGCAAGGAAT TGCCATGGCC GGAGCAAAGG AATTACCGTT TACAGGGATG 001600
001601 GCCATGGGTG GCTTGGATGA GAGTGGGCAA CCTGTCAGAC ATTACTGGAC ATCCAGCCCA TTTTCAACAT CTAACTTGTG 001680
001681 AAATGGAAAA ACTCCACCCC ACTTTATACA ATGGATCCCC AGAAAATGAC TGATCTCTAT GTGTCTATCT GTGCTACCCA 001760
001761 CCAGCGTACC TGAGCAGATG TGTAGTCTCT CCTAAATATG TTTCTGACTG CAGACCAAAG AAGGTCCAGA GTCTTGGTGC 001840
001841 CTCCATGAAA CAAATCCAAA TACCCCAAAC CTGAAGGGAC CATTCTGGAT GCAAACCCTA ATTGGGGCTC CAATTGATAA 001920
001921 GGGGACATGG CCCATCTGGA ATATTCACAA ACATTCTTCC TGTTTGGACT CAGGAAAGGG GTACCAAAAC AGGAAGCCTC 002000
002001 ACTAGGAATG ACCCCTTCCC CGCTCCAGAG ACAAAGAAAC AGAAGTTTCA ACCATAAACG TGGAATGAAC AAGGAAGCCT 002080
002081 CTGCATCAGA AAAATCGAGG CAAGCCTCTG GAACACAGCC AGTGTGCCTA GTGTAAGGAG AAAGGCCACT GAAAGGATGA 002160
002161 CTGTCCCAAA AGAAAGGACC AAGGGGCCAG AAAAAGGAGG AATATGATGA GGAAAAAGCT CAAAGTCAAA TCATGGAGCA 002240
002241 GGGTCACTGC TCTGACCACA GAGAGTGATG CCTGGGGACT CTCCTTAATC ACTCAGAGAC AATTAAAATT TCCCCACAGG 002320
002321 AACCCTGGGT ACAACTGACA GTGAGGAAAA AGTTAATTGA TTTCCTGGTT GATACTGGGC AAACTATTCA GTTTTAACAC 002400
002401 TTTATGAGCA AAAAGCACCA AAATGATTGT ACCTGTGATA GGAGTTGCAA GAATAATGCA ACAAAAGGCT TTCCTACAAC 002480
002481 CTTTAGAATG CAAACTAGAA AGTTTGGACC TAAGGCACTG CTATTTCTAT ATGTAAGAAT GCCCAATTCC CTTGCTGGGA 002560
002561 AAAGACCCAT TATGCAAATT AAATACTCAA GTAATTTATC CCCAGAGAAA CAACTATGGC TGCAGGTCCT GCTAAAGCAA 002640
002641 GCACTGCAAC TAAGATGTTA CTCACTTGCC TTAAGAAGAA ACAAGAATTC TCCCTCAGAA GTCTATGAGA GAGTGCGTAA 002720
002721 TTGTGAATAG GCAGAAGGAA TCCCAGGAAA AACAAGAAAT ATACAGTGAG TGCATATAGA AAAAATAGAA GGGGCTACTG 002800
002801 TGACCTGGGC GGCGGGGAGG AGGCGAATAA AAAAATCAGT ATACATTAAG AAAGGAAGCC TTAGAAGGAA TACAGCCTGT 002880
002881 CTTTCAAAAA TTTGAGAAGT GGACTGATTC ATCCTTGCAG ATCCCCATAT AATAGCCCTA TCGTGCCTGT AAGGAAGCTA 002960
002961 CACTTCTACA AATATCAATT TGCCCAAGAC CTGAGAACCG TTAATAAAAT AGTCTTGGAT ATTCACCCAG TGGTGCCTAA 003040
003041 CCCAGATACT CTACTGACTG CTATATATAG ACATTATGAA TGCTTTTCAG TGCTAGATCT GAAAGATGTT TTCTTCTGCA 003120
003121 TTCCAATTGA AGAAAAGACC CAACAATTAT CATTATTATT TTTAATGACA GGACCGAGAG ACTAAAACAA CCTTTCAATA 003200
003201 CTGTTAGACA GTGGGGTCTC AATGTGTTAA AAAATGCACC AACAATTTTT GGGGAAATAC TGGCAAAAGA CTTAGGAGAC 003280
003281 CTACAACAAG ATTAAGAAGC CTGGCTACAA CACATAGATA ATTAATAGCC AGCCACAACT ATAGGAAATG CTTAGCTGAT 003360
003361 GTCATTTTAG TTCTAAATCA CCTGGTACAA TATGGATACA AAGTATTCCC AAGAAGCCCC AAATATGTAA GTAGAAAGTA 003440
003441 ACCTGTCTTG GCTTTAGGTT AAAGCAAGGC CAAAGGAGCC TGGTCTGGTA AAAAAAAAAA ACAAAAAACA GGCAATAGCA 003520
003521 GCCATAAAGC TCCAGAGAAT GGGGGCAACC ATGGGGATTC TTAGAAAGGG TTAGCTTCTG CCAGATTTGA TTCCTAAGTT 003600
003601 TGGACTAATG ACTAAAACAC TTTATGAATC CTTAAAGGAT TCACTAGACT CAGAGGCCCT TCTCTGGACA TCTAAAGGTC 003680
003681 AACAAACATT TTATACCATC AAAGAAAAGC TGATATCACC CCCTGCACTG GGATACCAAA TTCCCAAAAG CTGTTCAAAC 003760
003761 TCTATATCCA AGAGAAACAA AGCATAGGTG TGGGTTGTGC TAATGCAAAT GCTGGGAGAT GCCCCACAAT CCATGGCCTA 003840
003841 TTTCTCTAAA CAATTACACC AAAGATTAAG GGATGGCTCC CCTTCCTCTG GGCAAGAGCA CCCACTGTGA AGTCCTACAG 003920
003921 GAAGTAGAAC AATTTACTCT GGGACAGCCA GTTACCTTGT TTGTACCCCA TCAGGTGCTG ACTCTGCTAG AACAAACGGG 004000
004001 AGGCTACTGG CTCACTGTGG GGTGAGTGGG CAGATACCAG GCCATCCTCT TATATGATCC AAATATCACC CTACAAACCA 004080
004081 CCATGGCTCT AAACCCTGCC ACACTGCTCT CAGCCACTGA ACACAATCCT GGGTTAAAGC ATGACTGTAA ATCCTTGATG 004160
004161 CAGCTTATTC AAGCATGCTG AACCTGTCAA ACTAGACAAT GAGTGCTCTG GACTTGAACT ACACTGATGG GAGCAGCTTA 004240
004241 ATGAAAGATG TGCACAGAGC CGGATGTGCC ACTGTGACTA CCAAAAGGGT AATAGTAGTC CATACCCTTC CTGCAGCTAC 004320
004321 CTCCGCACAA AGAGCTGAGT TAATTGCTCT TACCTGAGTC TTTAGAACTG TCCCAGGAAA TGGGAGTAAA GATTTATTCT 004400
004401 GATTCCATAT ATGCATTCCT GGAAATGCAC GCCAATTGGG TGATCTGGAA ACATAGAGGA GGTTGCTTGA AATCAGAAAA 004480
004481 TACAGACATT AAACACCCAA GAGAAATTCT GGACCTAGTA AAGGCAATTG CCTTGCCTGC CCAGGCTTCC ATCATGCACT 004560
004561 TCCCCAACAC CAGAGACATA ATTCACAACC GAAGGTAACC AGGCAGCTGG CAAAGCTGCA AAATGAGCTG CTTGGGAGGC 004640
004641 ACAGGTCCTG GGACATGAAT ACTCCATTTG GAATTACTAG ATTTTAAACC TCATTACACT GAACAAGATC CCAAACGTGC 004720
004721 CCAAGCCAGG GGTTTGAGAA AAGAGATTCC AATTCCCCTA GAAAACTGAC ACCTATAAGA TAACGCCTAC AGGATGATGA 004800
004801 AACCCCAAGG CCTTGGTTTA TCCAATCTCA AAACATCTAC ATAAAGGAAT GCACTATGGG AGTGATGTCC TCGCCAACCT 004880
004881 AGTACAACCA CACCTCAGTA GACCACACTT TCAAAACATC ACTCGGAAAA TTACACAGGG ATGCATCTTG TGCACTACAA 004960
004961 ACAAACAATC CCAAGATGGA ATGTAGTCCT CCTAAAAAGG AGATATAGTA CAAAGAGCTG AGTCCCTTCA AAGACTGAAA 005040
005041 GGCGGGCTTC ACTCAGATGC CTACCTGGTT ATGTGCGCCA AGGAAAGATC TGAAGTTATT AATAAAAGAA AAAGAAGGAG 005120
005121 ATATAAGC
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Predicted Small Protein

Name NONHSAT040875_smProtein_4379:4597
Length 73
Molecular weight 8368.661
Aromaticity 0.0833333333333
Instability index 51.7513888889
Isoelectric point 9.35809326172
Runs 11
Runs residual 0.0118613138686
Runs probability 0.03861347979
Amino acid sequence MGVKIYSDSIYAFLEMHANWVIWKHRGGCLKSENTDIKHPREILDLVKAIALPAQASIMH
FPNTRDIIHNRR
Secondary structure LLEEEELLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHLLLLLHHHHL
LLLHHHHHHLLL
PRMN -
PiMo -
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