NONHSAT038190
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT038190 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2071 nt |
Genomic location |
chr14+:88551776..88556845 |
Exon number |
2 |
Exons |
88551776..88553367,88556367..88556845 |
Genome context |
|
Sequence |
000001 gcatggcaag aacgattatc ccgatttaca gatgaaggaa ctTAACAAGC ATCTTCCCCA ATTCCTTTAT ACTTCTGGCA 000080
000081 AGAAAAGTAA AGCTgaatgt ctaaataatg cctacacata aatattaaaa taagacaaac aattcaataa gaaataggga 000160 000161 aatccatggg cagatgttct gcagatgaaa cacatggctt gcaaacattc aaagaggtgt tgaacattat cagggagccg 000240 000241 ggaaatgcaa ttaaggccag aatggggtac caattcccat ggctttttca ggcaaaaatg taaaaatcaa tctataccaa 000320 000321 gagataaaat agagcctcag gatctgtatg ttgctgatag aaatgtgaat ttagaaaaat ttgacattct ctactaaagt 000400 000401 tgaaattaat atatcctgtg acccagaaat ttcactccta catatatcct caaaatacat tcttatacat caacaagaga 000480 000481 catgtgcaaa aatgtttgca tcagcatttt cacagtagca aaaaatctag aaacaattca aatgtccatc aacatgagag 000560 000561 tgaattaatt catcgcataa aaattcactt aatggaatat taagtagagt ttaaatgaat ggattataaa aacatatgtc 000640 000641 aatatgggtg aatcttagca gtataatacc aactgactaa aaagcaaatc tcaAGGTAAA TAAGTTGATA GAGAAAGGAA 000720 000721 AGCTAAGGAA TGACGAGATT TGGAGGGAGA GAGTCAGGAG TGTGGGAATT TGGAGGAATT CCATAGGGGT AGtgtggcag 000800 000801 gcagaattct taaatgtccg caggtgaccc acactcttgt ataatcactt ccccttaagt gtaggtggga tctgtaactt 000880 000881 tctcctaacc aatacaatgt gacaaaggtg atggggtatc ccttctgtaa ttaagtcctg ttgtatggta aagatgaagg 000960 000961 aattttgaag atgtaattaa agcccctaac aattggattt aaataatcaa aagataaatt accctgggtg gggcttacct 001040 001041 aatcaggaga gcccttaaaa tgagtttaga agtcaggtac ttaaagcagc agaaactctt tctcttcatt gctgattttt 001120 001121 ttttttactt ttaatttaag ttcaggggta tatatgcagg ggtgtgatat aggtaaaatc gtgtcacaga ggtttgttgt 001200 001201 acagattatt tcatcaccta ggtattaagc ctagtatctt ttagttattt ttcctgaccc tctccctcct cccattctcc 001280 001281 atcctccaga aggcctcagt gtctgttgtt cccctctatg tgtccatgtg ttctcatcat ttggctccca cttgcaagtg 001360 001361 agaacatgca atattggttc tctgttcctg tgttagtttt ctaaggataa tggtctccag cttcgtcaat gttcctgcaa 001440 001441 aggacatgat gctgactttg aagatgcaag cttccacatc tacagcctca aggaaacaaa ttcagccaac caactgaggg 001520 001521 agctttcctt gtcctgcctc aagatgagat cacagtctgc ccaacaccat gatttaggcc ttgtgacacc tgagctcaga 001600 001601 tggaaaagaa tggtgttact gagacccttc aaGATTCCCA GTGTAATTCA ATAAAGAAAA GGCAACACAA AGGGGTTGTA 001680 001681 TAGAATTCGC CACATTATGG ACCCATGTCA TAGAGAGAAT CCACGGTGCA TTTGTTAGCT GCATTTAAAT GACAACACTT 001760 001761 TCAGATCCAA GATTTATTTG GTAGGCAAAT ATATCTGGAT GCAGCCTTTT AAACAATGCC ATTTCACATC TCCATTCTGG 001840 001841 AATGGTTTTA CACTGAGTGG GATCCAAAGC TTTAGTGTTT ATCCTTTAGT GGAGTGAGGA TTTTGGGATC TAAATTGACT 001920 001921 ATTCTCCAAC ATGTACTGTT TTAACATTTA GAAAGTGTCC ATTTTTAGCA AAATCACAGC TGTGTGAATG TAACATATTG 002000 002001 GTGTGGAGGA GGGTTACATT TCAACTTGCT ATATTATAAA aataagaaaa ttactaactt ttagatctgg a |
Predicted Small Protein
Name | NONHSAT038190_smProtein_1409:1516 |
Length | 36 |
Molecular weight | 3842.4879 |
Aromaticity | 0.0285714285714 |
Instability index | 43.6 |
Isoelectric point | 10.2890014648 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.0224720518838 |
Amino acid sequence | MVSSFVNVPAKDMMLTLKMQASTSTASRKQIQPTN |
Secondary structure | LLLLEELLLHHHHHHHHHHHHLLLLHHHHHHLLLL |
PRMN | - |
PiMo | - |