NONHSAT038056
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT038056 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2015 nt |
Genomic location |
chr14+:81687723..81689737 |
Exon number |
1 |
Exons |
81687723..81689737 |
Genome context |
|
Sequence |
000001 CGGAGGAGGA CTGGTCACGT GGCGTGGCTT CCGGCCTCTG GCGCGTTCCT ATTCGGGAAG GTTTTAAATG CGGAGTCATC 000080
000081 TCTTGATTTG TCAGCGAGGC TTTGACTGTG AGCTTCGCGG CGTTCGCGCC TCACCGCCTC ACCGAGGGTG GGTCTTTCGC 000160 000161 GCGCAGAATT GTGTAGGATT TTCCAAAGGG AGTAAAAGCC GATCGGGGCC TACTTTTAAC ATTCCACAAT TAGTAACGTC 000240 000241 TGATTCGTTT GTTTCCACAG TGGGTACGCT GCGAAGACTA GGCTTATGTT ACCCAGAGGT TAGTCCTCTA CTAGGCCACG 000320 000321 TACTTTAAAT AATTTATCAC GCTAGTGGAA ATGCGGGGTG GAAGAAAACC CCACCAGCCT TTGGATTGTA ACAGCACAGT 000400 000401 AACTTTCCCT GGTTTTTAAA AATATTGCCA AAATACTGCG ACTCCATGTG GCCAACGTAT AGTGACTGAT CACTTTGAAA 000480 000481 TGCATGCCCT TGACCCACCA ACTCGCATGG CCTCTCGCTA TAAGAGAGCA AGCCGGCTGT GTTCCATGTT CAATTCAATA 000560 000561 AGTGCAATTC AATAAGCTTT TGACTTGTTC TGCCCAAGCA AATCCTGCCT TTATATCGAC CTTGCAAGCA GAACAGAGAA 000640 000641 TGCTGTTTGG AAGGCAGAAT TCATAGTACC TAGTTTTCTT GTCCCTGGGA ATTTTGAGGG ACTTGAAATG TCGCGTGGAT 000720 000721 GAGTGAGGGA GTTTGTCTTC CAGAGACAAA GCAAAACGAA ACGTCAAAGT TCTGTGCTGG TGAAACCAGA TTTGAAGAAT 000800 000801 ATCAAAGGCG TCTTACCAAA GAGGAAAAAA AATGCATCTT GCCAAGACTT GAAGAAAGGG ATTAGAGAAA CCAGAGGCCT 000880 000881 TGAATACTCA GAAAATGGGA GATTGTGAAT GGGTGTAGAG GATATCTATG AACCTTGACA TTTCTTTTCA CGCCAAGTCC 000960 000961 ATTCCCCTGT TAACAGTTGC TTCCCAGTTT CCTGCACAGC TGCATGGTCT GGGACACTTA AAGAAAAAAA TCACAGGAAA 001040 001041 TCAGTGTTCT TGGTATATTA TATAAAGTTA TGATTCTATC AACATTTGTA ATTCATTTAA TATTCAGGTG ACAGCCCGAA 001120 001121 AATTTACACT AAACAATACC ATTCCTGTTA AGTTTTACTA CATATTGAGA GGACTTCTTG TTACCTCCCT ATTACATACT 001200 001201 CCCAAACGCT TTGCACATGG AATCCCTCAC CTTCCACCTA GTTTTCCCCC CTACTATTGA TATTCTTGAC TAAAAGGTTG 001280 001281 AGTAGTTTCG CCATCAATTA AAGTTAAAAC CACTGCAGAC AGGACAGGGA AGAAAAGCTA CGAGGTTTGC TCTTCACAGA 001360 001361 ATTAATCTGT GAAATAATGG ATTGTAGTTA CTGGATTAAA ATGGCAGAAA ACCTAGTCTT GGCCTCCTTA AGACCATCAG 001440 001441 ACTCCCTGGA GGCTCTGAGT TGGCTTCTCT CTTTACACCT AGATTGCAAC AAGACCTAAG CACTTGGTTA ATATTTACCC 001520 001521 AGGAACTTAG ATTGCTTGTG TGTCTGGCAT CTAGCCATCA TGGATTCCAT TCCAATATAT TGGTTTTCCA GTCCCTCAAT 001600 001601 AGCTGTTATA TGCCTTCATT GCAACATATG TGTGCCATCC AGTTTAGTTT CGGAAAGAAA TATTTTCTGT TATACCAAAA 001680 001681 TTGTAGGACT GAATACTTGG AAGCTGCAGC CCTTTAATTC ACAAAACAAA ATTTGTGAGA GAAAACTTCT CCCAAGTAAG 001760 001761 ATTACATTTA GCATCATATT TAAATTGTTT CTATCTGAAC TTTTTATTCT TGGTCTCCTA CAGCTTGAAT GACGTTTCTA 001840 001841 ACTTTAACAG CTCTTTCTAC TATATAAAAC ATTTATACAG GATTTGCTGT TTGTGATCTT ACACTTTGTA GCAGCTATGT 001920 001921 ACTTAGATAG ATACATAATA GTACTCTCCT TGTGATGAAT GTTTATGTGT TTTTTTTAAC TTCAAAATGA TTTATACTGG 002000 002001 GAGTTAAAAT GTTGC |
Predicted Small Protein
Name | NONHSAT038056_smProtein_1559:1831 |
Length | 91 |
Molecular weight | 10356.2796 |
Aromaticity | 0.122222222222 |
Instability index | 54.17 |
Isoelectric point | 8.69122314453 |
Runs | 15 |
Runs residual | 0.0268077601411 |
Runs probability | 0.0567861979626 |
Amino acid sequence | MDSIPIYWFSSPSIAVICLHCNICVPSSLVSERNIFCYTKIVGLNTWKLQPFNSQNKICE RKLLPSKITFSIIFKLFLSELFILGLLQLE |
Secondary structure | LLLLEEEEELLLLEEEEEEELLEEELLLLLLLLEEEEEEEEEELLEELLLLLLLLLHHHH HHLLLLLLLHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | ooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiTTTTTTTTTTTTTTTTTTooooo |