NONHSAT035645

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT035645

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2862 nt

Genomic location

chr14-:21510241..21514097

Exon number

2

Exons

21510241..21510531,21511528..21514097

Genome context

Sequence
000001 CGTTCAATGA GCTTTCACAT AGGAAACATA TCCAGACCAA GAATAGAATA TTTCCAGGTC CTCAGAAGGC TCCCCCATGC 000080
000081 CCCTTCACAG TTATACTTCC CCAAGGCTAC AACTATTCTG ACCTGTATCA CCACAGGTTA CTTCAGAACT TTCTAGTTAT 000160
000161 TTAATGCTAT TTAGGTCAAC TTTTAATGCT ATATTAGGTC AAGTTTCAAG AAAAAGTTTT AGTTGGAAAT TCTTCTTATT 000240
000241 TTGGGAGGAT GCATTGAAGG CATAATTTTA GCCACTTTAA ATTTTGTGAG GAGAATGTCT CTAAAACCAT ATTATCCATA 000320
000321 AGAAAGATCA TCAATAAAGA AGATAGAGTT GTGAAAAAAG AATAAAATGA AGAGAAAAAT CGGCTGCCCC AAGTATCTTG 000400
000401 CTTTTCTGTG CACCACAAGT GAAAATCATC TCTTTAGGAT GGTAAATGTA GTATACTGAC CACAAGAGTT CAAAACAAAT 000480
000481 TCAGATTTTG GATAAACTTC AGATTTATTC AAGAATCCCA GAAGTCCATT CGATGATGGC AATGTTCTGT TTTCAGGTAA 000560
000561 CAGTTGTTTT TACACTCAGT CGTTTGGCTG TTGTGACCAA CTCATCCACT TATTGGCCCT CATTCTGTTA GAACTGTTTA 000640
000641 ATGATCTGCT CTCCTTTCCT TTAATCATCC TTTCCTTACT TTCTCTCCTC ATCATCTCAG ACAACCTGGC TGCCCTCCCA 000720
000721 GGACTCTGCC TGCGGGCTTG TCCTCTAACC CACTCATGAT CATCACTCTG GCAGAAGGAA GTCTCTCGGG AGACCTTAGT 000800
000801 GGGGGTATTT GCCTTGGTCT GCGTGTTTTC CAAAGATGGA TATTGCTACT ACTAGTTATG ATCTAACACC TGTCAGTACT 000880
000881 TGGGGCTGAC AAGCGTTTCA TAGATAGCAT TTCCACATCT TTACCTGGAA TCCTATTTGG CAGGTAGGAT TCCTCACATT 000960
000961 TTGCTGTAGA GAAACAGACA AGCCAATTGT TCGAGGTCAT GTAGACGGGA GTCAGGATTT ACACCTGATT CTGTCTGGCT 001040
001041 CCAAAGCTTA CTCTGACTCT GGTCAGTAGT AAAAAAGCAC AGGAGTTGAT GGGGAGGGAT AGGTAGAGTG GAATCCTCAG 001120
001121 CAGGGTTGGG AATGTCTTAT AATGAATTTG GGTTTGAAAT AGAACAGGCA TGGGACACAA TGCAGCTTGT TTGGGACTGA 001200
001201 GATAAAGGAA GAAAGAAGGG GATGGTGCTG GTCAAGCAAT GTTGGAGAGA CCATCAGGAC TGGCCAATAC CAAGCCATAC 001280
001281 CTTCTCCAGC TCCAGTCCCC AGAACGAGAG AAATGGTATC TGTAGCCCAG GGGGACAGGG AAATGGCATT TTCGCATCTC 001360
001361 AACCCCTCAG GCCTGGGCAG ACTGCCAGAG TGGAGAGCCA GGGTAGCAAT GAGGCAGGGG AGATCATTAT CGGGAGGAAG 001440
001441 GAAGCTCTGG CAGCTCCCAC CAGCCTGTTT GTGACAAGCA GGCTCAGGGC CACGGAAGTC CCTTAAGGTC AAAGGAAATG 001520
001521 TGATCCTGGA TCTGGGGGAT GAAGCTCAGA CACTCCCTTT ACCTTATGTC TTCAGGCCAA GGGGATCTGG CCAGAGCCAG 001600
001601 GTCCAGGGCC TAGGTTGGAA GAGCAGTGGT CTAGAGAAAC GGGAGGGGCA GTTAGAGAGG AAGAGAGAGA AGGAATAAAA 001680
001681 TGCCAGAGCA CCTCATAAAC AATCTCTTGG CTAGAGAGGT AATGACCTTT ATTGCAGCCA ACACAGGGTA ACTGGCTCTT 001760
001761 CAGAGCACTC GTTTCTTCAT GAGTGAACTC TTACCTAGTT CACCGCTTGC CTCTGTAACA GTGACTTCTT TCTTGCGCAA 001840
001841 CTGGTAGAGT AGAAGGTACA CTGTATTTAG AGCAAGGAGA CCTAGGTTCA AGTCCAGGTT CTGCTACTAA CTAATTAGAC 001920
001921 AAGCTCTTTA ATTCATTAAG CTTTCTAAAA CCTTAATTTC CTCATCCATA AAGAAGGCAT ACAATCCCTG TCAAGTCTAT 002000
002001 GTCACAAGGG ATTAGAGGAT TCTATACAAA TATGAAGTGG TATTTATTTA TATTTTTCTT TCCTTCAGGT CACCTCACTG 002080
002081 CCACGTCAGA GCTGGGGAAG ACTTCTAGTT CAGGAACAGA AACAGCTGTG TCCACAAATC CCATATGCCC CCTTTCCATT 002160
002161 TATTTCCTCT CCTTGTCATG CTGCCCTAAT GCCAGGGGGC AGGGGAGACA TGTGCAATGG CATAGACCAG GGAACCCACA 002240
002241 GACCTGAGCT TGCTGTTTCT TGGGGATAAG CATCTGGGAA AACAGCAACA AAAAGATGAA AAGCCATCCT TCTAGAGCTC 002320
002321 AGCTCACCAG AGTGTCAGCT TCAGCCTCCC AGCAGAGGCT GAACCAGGAA CAGCCCCAAG AGATGAGGGG AAGAGAATGC 002400
002401 TCTGGGTGTA GGGGAGTGGT GCGGAGTCCT GGAGAGGGAA TTGAAGGTCA GCCAAAGAGC AAGCCAGTCT GGAAACCTAA 002480
002481 AGGACTCTGT CCAAGTGTAC AGGAACCAGG TGGAATTGCT GAGAGTCCTT TTTCTGGGGA GGCTTACAGG CCACTACGTA 002560
002561 AGACTTGTTC TGTCAGATCT CTGAGGGCCT CTTCTCACTC CTGAACTCCT TAAGAGCTGG CCCGGGCTAC GCTGTGTCTG 002640
002641 TTTGGGGGTG GGCTGGGAGC ATCACTGGAT CAGGAAATGA ATCAGGTTCA TGCCTCTCCA CTTACATGTC CCAAATACGT 002720
002721 GGACACCTAA GGATGCCTGT ACCTGCCTAA ACATGTTCAG CAATGAGGAA GCTTGAATCG TCACATTCGA AGACTGTATT 002800
002801 TGTTCCCTGG CCACATGATT TTAATGACTC TTTAATAGAG CACCTGACCC AGGTGTCAAC TG
[back to top]

Predicted Small Protein

Name NONHSAT035645_smProtein_755:865
Length 37
Molecular weight 3902.7745
Aromaticity 0.0555555555556
Instability index 42.7527777778
Isoelectric point 5.82110595703
Runs 5
Runs residual 0.0415695415695
Runs probability 0.0157039392334
Amino acid sequence MIITLAEGSLSGDLSGGICLGLRVFQRWILLLLVMI
Secondary structure LEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
PiMo i???????????????????????????????????