NONHSAT035645
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT035645 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2862 nt |
Genomic location |
chr14-:21510241..21514097 |
Exon number |
2 |
Exons |
21510241..21510531,21511528..21514097 |
Genome context |
|
Sequence |
000001 CGTTCAATGA GCTTTCACAT AGGAAACATA TCCAGACCAA GAATAGAATA TTTCCAGGTC CTCAGAAGGC TCCCCCATGC 000080
000081 CCCTTCACAG TTATACTTCC CCAAGGCTAC AACTATTCTG ACCTGTATCA CCACAGGTTA CTTCAGAACT TTCTAGTTAT 000160 000161 TTAATGCTAT TTAGGTCAAC TTTTAATGCT ATATTAGGTC AAGTTTCAAG AAAAAGTTTT AGTTGGAAAT TCTTCTTATT 000240 000241 TTGGGAGGAT GCATTGAAGG CATAATTTTA GCCACTTTAA ATTTTGTGAG GAGAATGTCT CTAAAACCAT ATTATCCATA 000320 000321 AGAAAGATCA TCAATAAAGA AGATAGAGTT GTGAAAAAAG AATAAAATGA AGAGAAAAAT CGGCTGCCCC AAGTATCTTG 000400 000401 CTTTTCTGTG CACCACAAGT GAAAATCATC TCTTTAGGAT GGTAAATGTA GTATACTGAC CACAAGAGTT CAAAACAAAT 000480 000481 TCAGATTTTG GATAAACTTC AGATTTATTC AAGAATCCCA GAAGTCCATT CGATGATGGC AATGTTCTGT TTTCAGGTAA 000560 000561 CAGTTGTTTT TACACTCAGT CGTTTGGCTG TTGTGACCAA CTCATCCACT TATTGGCCCT CATTCTGTTA GAACTGTTTA 000640 000641 ATGATCTGCT CTCCTTTCCT TTAATCATCC TTTCCTTACT TTCTCTCCTC ATCATCTCAG ACAACCTGGC TGCCCTCCCA 000720 000721 GGACTCTGCC TGCGGGCTTG TCCTCTAACC CACTCATGAT CATCACTCTG GCAGAAGGAA GTCTCTCGGG AGACCTTAGT 000800 000801 GGGGGTATTT GCCTTGGTCT GCGTGTTTTC CAAAGATGGA TATTGCTACT ACTAGTTATG ATCTAACACC TGTCAGTACT 000880 000881 TGGGGCTGAC AAGCGTTTCA TAGATAGCAT TTCCACATCT TTACCTGGAA TCCTATTTGG CAGGTAGGAT TCCTCACATT 000960 000961 TTGCTGTAGA GAAACAGACA AGCCAATTGT TCGAGGTCAT GTAGACGGGA GTCAGGATTT ACACCTGATT CTGTCTGGCT 001040 001041 CCAAAGCTTA CTCTGACTCT GGTCAGTAGT AAAAAAGCAC AGGAGTTGAT GGGGAGGGAT AGGTAGAGTG GAATCCTCAG 001120 001121 CAGGGTTGGG AATGTCTTAT AATGAATTTG GGTTTGAAAT AGAACAGGCA TGGGACACAA TGCAGCTTGT TTGGGACTGA 001200 001201 GATAAAGGAA GAAAGAAGGG GATGGTGCTG GTCAAGCAAT GTTGGAGAGA CCATCAGGAC TGGCCAATAC CAAGCCATAC 001280 001281 CTTCTCCAGC TCCAGTCCCC AGAACGAGAG AAATGGTATC TGTAGCCCAG GGGGACAGGG AAATGGCATT TTCGCATCTC 001360 001361 AACCCCTCAG GCCTGGGCAG ACTGCCAGAG TGGAGAGCCA GGGTAGCAAT GAGGCAGGGG AGATCATTAT CGGGAGGAAG 001440 001441 GAAGCTCTGG CAGCTCCCAC CAGCCTGTTT GTGACAAGCA GGCTCAGGGC CACGGAAGTC CCTTAAGGTC AAAGGAAATG 001520 001521 TGATCCTGGA TCTGGGGGAT GAAGCTCAGA CACTCCCTTT ACCTTATGTC TTCAGGCCAA GGGGATCTGG CCAGAGCCAG 001600 001601 GTCCAGGGCC TAGGTTGGAA GAGCAGTGGT CTAGAGAAAC GGGAGGGGCA GTTAGAGAGG AAGAGAGAGA AGGAATAAAA 001680 001681 TGCCAGAGCA CCTCATAAAC AATCTCTTGG CTAGAGAGGT AATGACCTTT ATTGCAGCCA ACACAGGGTA ACTGGCTCTT 001760 001761 CAGAGCACTC GTTTCTTCAT GAGTGAACTC TTACCTAGTT CACCGCTTGC CTCTGTAACA GTGACTTCTT TCTTGCGCAA 001840 001841 CTGGTAGAGT AGAAGGTACA CTGTATTTAG AGCAAGGAGA CCTAGGTTCA AGTCCAGGTT CTGCTACTAA CTAATTAGAC 001920 001921 AAGCTCTTTA ATTCATTAAG CTTTCTAAAA CCTTAATTTC CTCATCCATA AAGAAGGCAT ACAATCCCTG TCAAGTCTAT 002000 002001 GTCACAAGGG ATTAGAGGAT TCTATACAAA TATGAAGTGG TATTTATTTA TATTTTTCTT TCCTTCAGGT CACCTCACTG 002080 002081 CCACGTCAGA GCTGGGGAAG ACTTCTAGTT CAGGAACAGA AACAGCTGTG TCCACAAATC CCATATGCCC CCTTTCCATT 002160 002161 TATTTCCTCT CCTTGTCATG CTGCCCTAAT GCCAGGGGGC AGGGGAGACA TGTGCAATGG CATAGACCAG GGAACCCACA 002240 002241 GACCTGAGCT TGCTGTTTCT TGGGGATAAG CATCTGGGAA AACAGCAACA AAAAGATGAA AAGCCATCCT TCTAGAGCTC 002320 002321 AGCTCACCAG AGTGTCAGCT TCAGCCTCCC AGCAGAGGCT GAACCAGGAA CAGCCCCAAG AGATGAGGGG AAGAGAATGC 002400 002401 TCTGGGTGTA GGGGAGTGGT GCGGAGTCCT GGAGAGGGAA TTGAAGGTCA GCCAAAGAGC AAGCCAGTCT GGAAACCTAA 002480 002481 AGGACTCTGT CCAAGTGTAC AGGAACCAGG TGGAATTGCT GAGAGTCCTT TTTCTGGGGA GGCTTACAGG CCACTACGTA 002560 002561 AGACTTGTTC TGTCAGATCT CTGAGGGCCT CTTCTCACTC CTGAACTCCT TAAGAGCTGG CCCGGGCTAC GCTGTGTCTG 002640 002641 TTTGGGGGTG GGCTGGGAGC ATCACTGGAT CAGGAAATGA ATCAGGTTCA TGCCTCTCCA CTTACATGTC CCAAATACGT 002720 002721 GGACACCTAA GGATGCCTGT ACCTGCCTAA ACATGTTCAG CAATGAGGAA GCTTGAATCG TCACATTCGA AGACTGTATT 002800 002801 TGTTCCCTGG CCACATGATT TTAATGACTC TTTAATAGAG CACCTGACCC AGGTGTCAAC TG |
Predicted Small Protein
Name | NONHSAT035645_smProtein_755:865 |
Length | 37 |
Molecular weight | 3902.7745 |
Aromaticity | 0.0555555555556 |
Instability index | 42.7527777778 |
Isoelectric point | 5.82110595703 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0157039392334 |
Amino acid sequence | MIITLAEGSLSGDLSGGICLGLRVFQRWILLLLVMI |
Secondary structure | LEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i??????????????????????????????????? |