NONHSAT035100

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT035100

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6688 nt

Genomic location

chr13-:109882819..109960133

Exon number

11

Exons

109882819..109882931,109884735..109884789,109886202..109886680,109907444..109907712,109910707..109911015,109917255..109917514,109917732..109918905,109921134..109921382,109923414..109926390,109928997..109929474,109959805..109960133

Genome context

Sequence
000001 GCACATTTGA ACTTGGCTTC CCCAACTTTT TCTTGCCCTT TTCTCTTTTT GATAAATAAC CATCTTGCTG TACATCAAAT 000080
000081 TCTTGAAGCG TTCCTGCTTT CCAAGCTTGT TCGTTTCACT TTCCTTGTAG ATTCTATTTC TCCATCTCCT GCACATCCAT 000160
000161 TAACGTCTCT GGGCTCTGGA ATCTAGCCTC TGTTCATCCA CGTTGCTCCT CAGGAAAGAA AAACAGTATT AGTTTAACAC 000240
000241 TCCAGAGTAT CTAGAACTAA GTTATGCTTT GAGGAGGTCT GAGCAGTTGA TGAGCAGTTC AGGCTGTGAA GGAGCTTGCA 000320
000321 GGTGTTCCCC ACAAGAAGAA AGCACATACA TGTATTCAAT GTAAGTTTTA TGTAACATGG GAGCCTTCAG AAATGAAGAC 000400
000401 CCAAGGAAAC AGGGAAATCT ATGGATGTTT AGGTTTGATG AAGACTTGGA CAGTCATGCA GAAATATGAT TGGACAAGTG 000480
000481 GGTGTGACCT AATGGTTATA AAATGAGGGG AACTTAGCAA GGCCTTTGTT CAGATTCGTC TTGGTGTTTT TTTGTCTTCA 000560
000561 TTCCTTTCCC CCCAATATAA GGAACAGTCT TCTGTAATGA GAGTCTTATG ACTTATTTTA GAGAAAGGCC AGAGAATTCT 000640
000641 TTCATGGCCT GCTTCAGGGG AGAATGGTGG AAGAAGGTCA GAGAGACCTT CCTGCTTCTG CTGTCTCCTT AAATGCCAGC 000720
000721 ATGTCATATT CTAGGGTAGC GTGTTCTGGT CCCTGTTACT CATCTTGTAT TGTCCTTCAA GCGGCATCTT CCTGCTTCAT 000800
000801 TTCTTATTTG AGTTAAATAT CAAAGTAATA GGCATTACTT ACTTTTAGAA AATTGCAACC AATAAGAGGC ATTTCATTTG 000880
000881 TCGTGCATTT AACTTTTGAG ACATAATGAA TAGTTTCCTA AAACTTTTCA AAGCTGAATG TTATGGAAGA AACATTCTCA 000960
000961 CCATAACTCT TAAAAATTGC ATATCCTTAC AAGTGAATAC CATATCAAAA TATGAAAATC ATTTCAGATA TTTATTAACT 001040
001041 ACTTAAAACT GACAAATGGT AAACAGAAAT GTCATTTCTT TCATTAGTAC AGAGAAAGCT CCCTCACTCC TCCCAAATAT 001120
001121 CTATTGTGAT GAATTGGTTG ATTATTTTAA ACAATGTAGT TGCACAAATA GACATTAATG TGAATGATGA TAGCATGTCA 001200
001201 CTTCTGAGGA ATTGCATTTA GGAGGTACGT GTATGACAGC TTATGTGTAA TCTTCAGGCT TGTATTTATG CCACAAGAAA 001280
001281 ATAGACTTTC TTCAATGATT CACTTCATCA CAGGTGGCCT ACCTACCTGA AAGACATCTT CATGCCAAAG TTGGCTGACT 001360
001361 TTCTCATGCA CAACGAACCC ATATTCCCGT AGGAATTGAA GGATATGACT AATCAGTTGA AAACAGTTCT TTCATTTGTT 001440
001441 TAACATGTCA AACTCAGGAA CAAGCCCCAA GGTTCAAGTT TTACTGAAAG ACTTTTACCA TAGTGCTTTT TTGACATAGA 001520
001521 AAAGAAAAAC AGAACAATAA AAAAAAGAAA GTCAACAATT TTTTCAGTGA AGAGACTCAC AGAGATTGAA GGTTCTCCGA 001600
001601 AAACATTCAG GCCAATGCAT CATTTTACAT ATGAGAAAAC TGAAGTCCAG AGGTGACAAA ATTTGACAAA TCTACATAGC 001680
001681 TAAAATGAAA CCAAACAGAC TCGTAATCCT ACTTGGTGCT GGAGGGAGGC TGCAATCTGG GGAACTTGTT ATCCAGACAT 001760
001761 CCCAGCTGGT AGAGTGTGCT ACTACATAGA TAAAGTCACT GTGGTTAGTG TCTAGCCTCA GCTTTAAAGT TCTGGAAAAT 001840
001841 CAAATTTGTC AATATTCCCA TGGTTATTTA GAGTTAGGGG AACTAATATA AATTCCAAAA TATAAATTTA TAAAAGAAAA 001920
001921 TATTGTGACT TTTCTTGTTC TCTATGTAGA ACATGCCCAT AATCTTCCAT AATCATCCTT ATGACATGCA GCATCCTTAC 002000
002001 AATGACTGAG AAGTGGTAAA TTTGGAAGCT TCTTAGGTGA GTGTCGAGAG GGCCGAGGAA CAGAATAGTC TCGGGACATC 002080
002081 TAGTCATCCC AATTTTACAA TTGAGCTATA GGCTGATAAT ACCACTGTCT CTGTTCTCTA AATAAGCATG GCAAAATTGT 002160
002161 GGTTTTCTGA ATGTCGTTCA TCAATAATCC AAGCTGGCTT TTTCACAGTT AGTGTCTAGA TAAGGTTCAA CAACATACAT 002240
002241 GTGGTTTCTC ATGGTTGTAT TTTATTTACA TTCTATTCCC CCTTTCAGAC CAATCAATCA CCTTGATTGA AGTTCTGACT 002320
002321 GTGGTCTTGC TAAGAATTCT TCTGGAATAT GATCCCTTTT GCTTGTCTCT TCAGCTTGCT TGGCAACTTT CTACCCACTT 002400
002401 TCCTCAAAAT TCCGAGACAT CAGACTCACC TCCAGTTCAT CTCCAGTTCA TGTGACAGCT GCTGTCCCTG CTGGTGAAGT 002480
002481 GGCTGTGCTG TCTGGGGTAT ACACCCTGGG GTTCATCGTC ACACACCAAG AATTCAGGAC ACAATCACAT GTGGGTGGGT 002560
002561 TAGGGAGTGG AAAATTTAAT AGATAGAAGA AAGGAGAGAG GAGAGCAGCT CTTAGAGAGA GAGAGAGAGA GAGACATCTG 002640
002641 AAAAGTGGGG AGGCAGTGGA CCAAAACAGA TATAATAAGT TGGAGAAGGC GGTGTCTGAT TTACATAGGG CTCACAGACT 002720
002721 GGTTCCATCA GGTATGACGT CTACATAGTG TGCGGGGGAA GGCTGGTTGC CCCACCCTAA TCTAATTATG CAAATAGGCT 002800
002801 TTCCAGTTGA TCAGAGCCAT CTTCTCTGCT CCTTACAATA CACTTGGCTG GCAGGGAAGG GAAGATGGAG CCACCAGTTT 002880
002881 GAAAATGTCT AGTCCTTAGT TCCTGCTGGC ATTCACCTAT GCAAGCTCCC AGCTTGCAGG CTGCTCTTTG TTAGAAAATG 002960
002961 ACTTGGGGCT GCTTTTCATT AAAAAGAAAA GCCTTACCCA GGACTCCCAT GCCCTTGCTA TCTGCCTAAG CAATTCCTTC 003040
003041 TTAACTCCTA TATCCCTGGG GAGATGGTAG GAGTGCTGCC CCTGTCTCCT TGCTTGAGAG GGGAACTGCC CCAGGGAACC 003120
003121 ACCGCCATCT TTCTCTATTG CCTGTGTGAC TGCAGCATGG TGAGGTTCTA AGTCCCTGTA CCCCTTTTGA CTAAGGATGT 003200
003201 TTTCCTTCTT CCCCATGATT TTGCTGGAGA ATGAGAGGCA GAATTAAAAC GTGCTGCATT TGTATTCAGA TGTAAAGTTT 003280
003281 GTGTCTCTGC AGAAAGCATT GCTTGTGTAG AGAAGGAAAG CATATTGTTT TAGTCCACAG GGGAGCTAGA AATGTGATCA 003360
003361 GTCATCAGAA TAAGGCAGAT GTGTGCTAAA TATTTCAGTC ACTTATTAGC AGATAATTTA TTGGCTTATT ATCAAATGTA 003440
003441 GCAAATATTT GCCATGTCTG CTTTGGGTTA CTTTTTTTGG GAAGCCTTAG GCCGATTTTT GGCAACAGGG ATTGAAAACA 003520
003521 TTTTACCACT TCCCTTACTG AAAAGGCCTT GTTGCCTGGG TGGGTGCCCA AGTCGTTGGT CTCACAGCTG AGGAAATCGA 003600
003601 CGATGCAGAC ACACCAAGGA CGAGGTCAGA GCAGAAGCAG AAGTTTAACA GGTGAAAGAA AGAGAACAGT TCTCTGCTGC 003680
003681 AGAGAGGGGT CCCAGAAAGG GTTGCCGTCC CACAGTAAAA TGAAAGGGTT TTTTTCATGC GCGTCCGTGT GAAGAGACAC 003760
003761 CAAACAGGCT TTGTGTGAGC AACGAAAGGA GTTGTTGTTT TGTAAGGGAT TGAGGTTTGG GAGATTAATC AGACACCATC 003840
003841 AGCAGGGAGA GCACCTGTGT TTTTGTGAAG AATTATGCCG AGGTAGGTAA CGGATGGAGA AGAAATTTGA GCTTTGGAGG 003920
003921 GGGATACCCG ATATCCTTTG GAGAATAAAT GCTGAAGGAG CAGAAGTATG TCTTGTTGAG AAGATTCAAA GGAGGGGCTA 004000
004001 CAAAGAAGAA GGTCATCAAT ATATTGAATA AGTTTCTTGC CCTCCAGAAA AGCAGAGAAA GGGTTGGGGC ACAGAAATAA 004080
004081 GGGATTGGGG CACAGAGATA AGAGGTCAGG GTGTGGAAAT AAGGGATTGG GGGTTCTTGC CCCCTAGAAA AGTGGGAAGG 004160
004161 GGGGTTGGGG CATGGAAATA AGGGATTGGG GCACAGAGAT AAGAGGTTGG GGTGTGGAAA TAAGGGATTG GGTCACAGAA 004240
004241 ATAAGAGGTC GGGGTGTGGA AATAAGGGAT TGGGGGTTCT TGCCCCCTAG AAAAGCGGGA CTTGCCACTA AGGGTGAAGG 004320
004321 AGAAGGGGTT GAGGGGTACT TTCCCCTCCC CCAGAAAAGT GGGACTTGCC ACTAAGGGTG AAGGAGAAGG GGTTGAGGGG 004400
004401 TTCTTGCCCC TGCCCCAGAA AATCAGAGAA GGGGTAGAGA CAAGAAGAGA AGGGGTTGGG GTACTTGCCC CTTCCCCAGA 004480
004481 AAAGCAGGGA AGGGGTAGAG ACACAGAGAG AAGGGGTTGG GGTACTTGCC CCTTCCCCAG AAAAGCAGAG AACGGGTAGA 004560
004561 GACACAGAGA GAAGGGGTTG GGGTACTTTC CCCTTCCCCA GAAAAGCGGG ACTTGCCGCT AAGGGTGAAG GACCAAGGCA 004640
004641 GGCATCCCTG CATGGTCTGA CACCCTTGAA ACGTGGGTGA ATAATCAGAG AGGTGTCCCT GCAATGATTA AACAGCAAGG 004720
004721 GAAGGCTGCC TTCCCAGTCC GTGACCAGCG CTGGAGTTTT GGGTCCACAG ATAAAACGTG TCTCCTTTGT CTCTACCAGA 004800
004801 AAATGAAAGG AATTGAAACT AAGAGAAGGG AGAGATTGAA GTGTGGCGCC AAGATTGAAA GGAGAAAGAG GTTGAGGGAT 004880
004881 AGTGAGGGAG GTTGGAGAAG AGAGTAAAAA GAGGCGGCTT ACTGGATTTA AAATTGGTGA GATGTTTCTT GGGCTGGTTG 004960
004961 GTCTGAGGAC CTAAGGTCGT AGGTGGATCT TTCTCATGGA GCAAAGAGCA GGAGGACGGG GGATTGATCT CCTAAGGGAG 005040
005041 GTCCCCCGAT CCGAGCCACG GCATCAAAGT TCACTCGAGT CCATGTGAAG AGACACCAAA CAGGCTTTGT GTGAGCAACA 005120
005121 TGGCTGTTTA TTTCACCTGG GGGCAGGCGG GCTGAGTCCG AAAAGAGAGT CAGCGAAGGG AGATGGGGTG GGGCCGTTTT 005200
005201 ATAGGATTAC TTCAGGCCAT CTGGGCGTAT ACGTGCAAGT CACAGGGGAT GCGATGGCTT GGCTTGGGCT CAGAGGCCTG 005280
005281 ACAGTTTTTA TAAGTGACCT AGTGGGGAGG CAGTATTTTA CCTACATAGG GTGTGAAAAA ACAGTTAAGA CCAGGTGTAC 005360
005361 CATCAGCATA GAGTGCGAAT CTCTGGCAGC CCCCATCCCA GCCTTTTATT ATGGAGGCGG GTCCTTTGCC TGAGCTACTC 005440
005441 CATGTTGCTT TCCTACTGTG CAGGTGAAAG CTATTCTAAA CCTTCTCTAA CAAAGCTTAA AAACATCCTA AGAAAGACTG 005520
005521 TAAAGGTCAA ACATCCTCAA AGAGATTAAT CTCCTTCCAG AACAAAGTAC AGAGTATTTT AAAGGAAGAC AGGAATCCAG 005600
005601 ACATTGAACA ACAGTGGTGA TGTCAAATAT CCAATTAAAA TTACTAGACA TGTGGGGAAG CAAGCAAATG TGACCCTACC 005680
005681 AAGAAAAAAA ATCAGTTGAT AGAAACAGAG CAGTGACTTT CTAGTTACCA AAGCTAATGA TTTTAATTTA GTTGTGATCA 005760
005761 TCCTATTTGA TCCATACTGT GGGTTTGTTT GCCAGGATGC TCAAAATTGA AAGTTGAAAC TTGTAATAAA TTTAGCAACG 005840
005841 ACATGTGTCC CCAAATCTTA AATTGAGATT TTCCAAGATC TTTGGTAACA CAAGGCACAC ACATATGCCT CACTGAGTGC 005920
005921 AAGCTCCACT GCCTTATGGT GCCTCCCTGA TGCCGAGGAC TTGGTAACCG TGCACTAATT CTGTGTGGGG GTATTATTTT 006000
006001 CCCCATTTTA CAAATGAGGA ATCTGAGGTT CATACAGTGT AAGTGCGGAT CATAAGTGAT ACCATAAGTG TCACAGCCTG 006080
006081 ATATCTTGAA AACTCTTTAA CCGGTTCTCA TTCATTCATT TATGCACCCT TTAGTTTATT CATCCATTAA TAGTATATTG 006160
006161 CTGTTCTCTG TGTGCCAAGG ACTGTTCTGG AATCTGAGAC ATACGAAGAT TTCTTACATC CCCACAGTTG AGTGAGAATG 006240
006241 ACAGAAATCA TGACACCAGC TGGCAGGTGC TGCAGTGAAG GTGTATGCAG AGGAGTTTTG AGAACTTAGA AGGGAAGAGT 006320
006321 CATTTAGTAG AAGAGAGTAC ATCTGAGCTT CCCATTTCTG GGACTCTCTA TGTCCAGCAT GGTAATGGAG TCTTACATTC 006400
006401 ATCTCCTTTT TCACCTGCCA GTTTTCACTG ATTCTTATGT CTCAGTATAA ATTCCACTTT GGAAAATACT TTCATGACTC 006480
006481 CTTTAAGCAA ACCTGATTTA TTCTTTAAAT TTTTATTATG TTTTTACCTT TGTCCTTAGG TGAGACCACT CCAAGTTATT 006560
006561 TCAAGCAAGT GGGATCCATC CTGCTCATAT TTCCAATCCC CTCTTCCATC CCATCCAAGT CTCCATCACT TACCATATCT 006640
006641 TCCTTCAGGA CACAGGAGTC AATAGGCCAC ACCTGGAAAC CATCTGAT
[back to top]

Predicted Small Protein

Name NONHSAT035100_smProtein_4703:4906
Length 68
Molecular weight 8016.3111
Aromaticity 0.0746268656716
Instability index 91.8328358209
Isoelectric point 10.5309448242
Runs 12
Runs residual 0.0357896381965
Runs probability 0.0406509450628
Amino acid sequence MIKQQGKAAFPVRDQRWSFGSTDKTCLLCLYQKMKGIETKRRERLKCGAKIERRKRLRDS
EGGWRRE
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLHHHHHEEHHHLLLLLEELHHHHHLLLEEEHHHHLLLL
LLLLLLL
PRMN -
PiMo -