NONHSAT034832

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT034832

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4640 nt

Genomic location

chr13-:98081597..98086236

Exon number

1

Exons

98081597..98086236

Genome context

Sequence
000001 GCGAGCGCTC CCGAGAGGCT TTGCGGGGCT CGGAAGCTTC TGCCCGCGCG GAGATAAACA AGCACCGCGA CCGCCGAGCA 000080
000081 GCGCCGAACC CAGCGCGCCC AGTCAGACCC CAGGGCCTGT GTACCGAGCA TGCGCAGTTC CCGCCCAAGC CAGGAGCAGC 000160
000161 GTCAACCTGA GACTCCCGAG ACATTAAGAA TTCGGAAGGG ATGAGATGGT AGAGGGGCTA GAGCTACCTC CAAGCTTTAT 000240
000241 CCTGAGGCGG GGAGTGAAGG AGAGATGCCC AAGGCCCAAG AGGGGCCGCG AGGGCCTTTG TCCGATGCCA CCCAGTCTGT 000320
000321 CAGCACTCCT AGAGCTTTGG TTTTATCTTG TATTAGCATG TGAAGCTTTA AGGGGGGGGC ACCTACAGGC TTCTGACTGA 000400
000401 AGTTGTGTAA ACGCAACAAA ATGAAGCTTT GGAGCGTTAG GACATTGATG GGAGGGTGAC GCCCCCCTCT AGCAGCGCGC 000480
000481 CAGAGGGGCG AGTCAGAGGC GGCCACACAC CACGGAAGTC GGGTCCAAGC CCGCTGACGT CGCCGGGGTC CCGCCCACCA 000560
000561 ACCCTCTGGA CCCGCCCACA TTTCTTCTAG ACCCGCCCCT TTCGGTGCCG AACTGAAGTC GAGCTCTTCC CACGCCCTGT 000640
000641 CAGCCACGGG TGAGTTGAAA ACCTGGAGAG CGGAATCCCG AACGGCAGCC GGAAGGCCCT GGACTCCTCA TAGCAACAGC 000720
000721 CAGCTAGGGG CATCTAGTGG GAAGCTGGGA TTCATTCTAG CCAACCACAT CACGTCTCTG TACCACAAGG TACCATTCAC 000800
000801 GACCAATAAG AGAGCGCCCC CATACCACGT GCCTTTACTC CTTCAACCAA TCGAGAAAAA CGCTAGTCGT AGGATCCGCA 000880
000881 AGCCCACCTC CCAGTGCCTT GCCAGGCGGG GCTCTTCGCG CACGCTCTGC CAACCAATCG TAGGTGAGCT GGCGAGTGAC 000960
000961 GGAAGCTTCG GCCAAGCCAA CCAGAGCTCG CGAGCCCCTT GCCACCGAGG CCGGCGGGAT GGAGACAGGG ACCGGCTGCT 001040
001041 GGGGTTTGGG AGGGGCAGAG ATTGAGGAGC CAGTTGCTGT GCCCTGTTCT GGCAAAAGAA CAAGATGCGT TGCAAGCCAG 001120
001121 AATGATGAAT TCCACTTTTC ACGTCGCCTC CGTGGCATTC TGCCTAAATG ATGGGCATGG AAATGGTGCT GAGGGATGTG 001200
001201 GGCTGAATCG AGAACACAGG GACTTTTGTC TTCAGGGTGA GAAATGTTCC GGTCCTTAAG GAAACATCGT GCAGCAGTTG 001280
001281 CATGGGTCTT CCAGGCGTTC CTCCCAAAAC ATTATTTTTT TTCTTTCACT ATTGAGTTTT AAAACTTAGC GTTCTGTCGC 001360
001361 TAGCATTGCA TCTTAGTTAC ACATCCTCTC CCACCCATAA CGTCAAATTT AGGAGACGAT ACATCCCCAA GCTTTCCTGC 001440
001441 ATTATTTTTT GCAGTAACTG GTTATTCAGT TTACTTTCTT TAAACTATGT CCTTCTCAAA CTAGTCTCAC CTGTTCGTTA 001520
001521 CTGTCGCACA TTTCCTGCGA ATAACACGTT TCTGTAGTTC TGTTGTTAGA GCCTGGCATA CCTCTCCCCG TTCCTCTTTC 001600
001601 CCACAAGGTC ATCATGCAGA GGGGATTTTG GTCTGAGTTA AAAGCCAGGT ATTCTTTCAC CATCTTTTCT GTCGATAGTC 001680
001681 AAACTACTAC AAAGACTACT CAAATTTAGT AGTTTCTTAT TTCCCTATAG CTTCGTTATA TTAGAATGGA TAACTTATAT 001760
001761 TTGCATTACC TTGCTGTAAT GAACACACAC CAAGTTTTCA TTTAAAATTA TCAAGGACAA ATGTCCTCTG AATTTAAAAA 001840
001841 TGTGTATGTA GTAAAATATA ACTCAGCATT TCTTGATTAC ATATCATTAA AATATGAATG GTACTATCTG AGCCACCAGA 001920
001921 ATCAGCAGTG AAGGTATTAT ATTAATAAAA AGGACTAAGA ATCAGGACTG TTTTAAGGGA ACTGGAACCG AAGAGGATCT 002000
002001 ACTATTTCAT CCTAGGCTAG TTAACATGAA ATAGTGAATT AAAATTGAAA GAGCTTACAT GGATGCTTCA TATCTGAGCT 002080
002081 ACTTTGGCAG GGATGTTTCA AGAGGATGTA GGTAAGTATG GTGTTCACCT AGCTTTCCAG AAGTCTCATA TTTTGTGTAA 002160
002161 AATTGGTATG CTTATTCATG GTTACTTTGG GTTAGTAGAA GCTATACTTC TTTTCCAAGG AAAGACAGAC TGTCTTAAGA 002240
002241 TTCTAACTGT GCATCTTGGT GATAAGAAGT TCTTAGGGTT GTTAAATAGA GCCAGGAAGC GTGAAGCTTT CTCTCTAGAT 002320
002321 CATGACAACT CATCTAGTAC CTTGCATTAC AAAGGAGCTC TAAGTCCATT TACTTTGCAA GGAATGAAGT TCCAGTGATT 002400
002401 AATGTTTTTG AGAAATTTGT ATTGGGATTG TGGGGTCCAG AAGGTTGCCT TAAGTAACTG TTTTCATGAC TCCTAGGTCC 002480
002481 CTAGATGTTG AGAAGCTCTG GATTGAAGCT GTCACAAAAA TAGTGAGTGG GCTCCGTAGT CACTCCATTT AGCATAATAC 002560
002561 AGAGTAGGAC AGCTTTGTGA CATTTCTCAG GCTATTTCCC CTGACCTCTC ATCAATGCTG ACGTTTTTGA TAAGAAGGGG 002640
002641 TATAGAGACT GCAGCCCTTG GGGTGGTTAC AGTTCATTTA TTTACAGGCC TTATATTGAC AGGCCTCAGA TTTCATGCTC 002720
002721 AGTACCATAA AGGTTGATTT TTAACCACCA AGAGGCAAAA GAAACATGAC AGGTCGGAGC ATATTTTCTC ACCTATTCTG 002800
002801 GCTTAAATGA TGGTACTTAC CTGATTTGTG GTTGTAGGTG AAATGTTGGG TGAAAGATTA GCTGCTATAA AAAGGATGTC 002880
002881 AGGACGTGTA GAGAATTTAG AGGACTTGGG TGGGAGATGG ATGTCTATTT TCTAACCCCT TAGTCATGTT CATTCCGATG 002960
002961 CCAGCATAAA CTCTATTTTG AGATGATTAT AGAAATAACT TATATCTTCA TTTGTTTGTG GGAAATAAAA AATAAAAATG 003040
003041 ATATAAAAGA AATTTGAATT ATTCCCAAGA GCTGTAAATC TGTAAGATAG TGAAAACTTA ACGCAGTAAC TGACACTGCA 003120
003121 GGATCCCTTT AGTTTCCAAA GTGCATTGCC AGGAGAATAA AAAGAAAGAA AATCTTCATT TCTCCTCTCT CCACTAAATC 003200
003201 TGAAAGGGAG TTATCTCACC TATAGCCAGA TACCTTCAAT TATCGCACTT GTGTTACCGT GGAAACCCAA GTCCATCCTT 003280
003281 TCTTTCTGTA AAAGGTGTTG GAAAAGGTGG TATGAAGTGG GAAAGGTACT GTATTCTGGG ACTTCCTGAC ACCAGCAAGA 003360
003361 AGCAAATATG CAGATAATTT AATAGAAACA AATTAGTAGA GGATGTTTGT AATGCGAGGG GTACTTTTCG ACTGTAAAAC 003440
003441 CCTGATTCCT AATGCTTCTT ATTAAAGCCT GCATGCCTCT GATTAAACAT AAAGGGGAAG GGCATGTCAA GTACATTTAG 003520
003521 CACCTGTGAA ACGCTGCTGG CAAGTATAAG GAGAGCAGAC GATGGTTTCT TGACCTGTGA GGCTCCTAAT ACAGTTGAGA 003600
003601 ATCTGCAGTA TATATGTGGA GTGGAAAGGA AGGGGCAAAA TAAACTTTGT TCTTCCTTTA AAAAATGTGA TATGTCTCAG 003680
003681 TGCTTTTGAA AAGAAAAGGA ATTAGAATGC AGAAATTAAG AGTATGGAAA CAACTCAATA AAAGAAACGT ATGGGTGGAG 003760
003761 AGAGTAGATG TTTCAAAAGG CCATTTTAAT CAGAAAAAAA ATCTGAAAGA AAAGACGTAA TGATTAAAAT GTAGGCAGAA 003840
003841 AAAAGAAAAA GCCTGAAGAA TCTTAAGAGC TAGAGGATTC TGCGGAAAAC AGAGCTTCAG TGTGGTTCAT TTAACAAAGC 003920
003921 AGAAGAGCAG GCACAGTGTT GCTTGCGTAC CCAGCAGTTT CCCTTTATTT TTGCCAAAGA AGCTGGGATG AATCAGGATT 004000
004001 GGACTTTAAT AGCattgctt tccctctgcc cacggttagt ccaaaagtag gcacgtgact cagttcttgt cattggaatg 004080
004081 gggagaaggc tgctagggct ggagggattt ctaggatatt gacaagagtg aggaaatatc cccgttttct gatgtcgctc 004160
004161 tctttgcttc ctgctttaca cattgaaata tgagaatgtg gcctccattt gggggctatg atgcattatg acattatggt 004240
004241 gcaatactgt agaaagccag caacttcgga tggccaggga ggaggatggg aagaacctag gtcctgcatg acaacattgg 004320
004321 acagtcaaac caacattaga actgcccaca tttggactta tggctaagta aacagctggt gtctttcaat ttaagtgtgt 004400
004401 gttggtaagg ttttctgcat cttacagcaa aatacatccc acctgTTAAC AAAAAGTATG AGGGATTCCA GCCAAAATCG 004480
004481 GGCTTTAAAA AATCAGCAAG CATTTGTGAG CACTTTCATT TCACTAATAT CTGAACGATA GTTCAAAGAT ACTATaatat 004560
004561 taattgagta attactgtgt atatttttta ggctctgggg ataaaacaat aagcaattag ccaaaagagc ttgtattcta 004640
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Predicted Small Protein

Name NONHSAT034832_smProtein_3503:3688
Length 62
Molecular weight 6807.7216
Aromaticity 0.0819672131148
Instability index 50.1655737705
Isoelectric point 6.09393310547
Runs 11
Runs residual 0.0275108347466
Runs probability 0.0299818535113
Amino acid sequence MSSTFSTCETLLASIRRADDGFLTCEAPNTVENLQYICGVERKGQNKLCSSFKKCDMSQC
F
Secondary structure LLLLLLHHHHHHHHHHHHLLLEEELLLLLLLLLLEEEEEEEELLLLEEEELEELLLLLLL
L
PRMN -
PiMo -