NONHSAT034832
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034832 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4640 nt |
Genomic location |
chr13-:98081597..98086236 |
Exon number |
1 |
Exons |
98081597..98086236 |
Genome context |
|
Sequence |
000001 GCGAGCGCTC CCGAGAGGCT TTGCGGGGCT CGGAAGCTTC TGCCCGCGCG GAGATAAACA AGCACCGCGA CCGCCGAGCA 000080
000081 GCGCCGAACC CAGCGCGCCC AGTCAGACCC CAGGGCCTGT GTACCGAGCA TGCGCAGTTC CCGCCCAAGC CAGGAGCAGC 000160 000161 GTCAACCTGA GACTCCCGAG ACATTAAGAA TTCGGAAGGG ATGAGATGGT AGAGGGGCTA GAGCTACCTC CAAGCTTTAT 000240 000241 CCTGAGGCGG GGAGTGAAGG AGAGATGCCC AAGGCCCAAG AGGGGCCGCG AGGGCCTTTG TCCGATGCCA CCCAGTCTGT 000320 000321 CAGCACTCCT AGAGCTTTGG TTTTATCTTG TATTAGCATG TGAAGCTTTA AGGGGGGGGC ACCTACAGGC TTCTGACTGA 000400 000401 AGTTGTGTAA ACGCAACAAA ATGAAGCTTT GGAGCGTTAG GACATTGATG GGAGGGTGAC GCCCCCCTCT AGCAGCGCGC 000480 000481 CAGAGGGGCG AGTCAGAGGC GGCCACACAC CACGGAAGTC GGGTCCAAGC CCGCTGACGT CGCCGGGGTC CCGCCCACCA 000560 000561 ACCCTCTGGA CCCGCCCACA TTTCTTCTAG ACCCGCCCCT TTCGGTGCCG AACTGAAGTC GAGCTCTTCC CACGCCCTGT 000640 000641 CAGCCACGGG TGAGTTGAAA ACCTGGAGAG CGGAATCCCG AACGGCAGCC GGAAGGCCCT GGACTCCTCA TAGCAACAGC 000720 000721 CAGCTAGGGG CATCTAGTGG GAAGCTGGGA TTCATTCTAG CCAACCACAT CACGTCTCTG TACCACAAGG TACCATTCAC 000800 000801 GACCAATAAG AGAGCGCCCC CATACCACGT GCCTTTACTC CTTCAACCAA TCGAGAAAAA CGCTAGTCGT AGGATCCGCA 000880 000881 AGCCCACCTC CCAGTGCCTT GCCAGGCGGG GCTCTTCGCG CACGCTCTGC CAACCAATCG TAGGTGAGCT GGCGAGTGAC 000960 000961 GGAAGCTTCG GCCAAGCCAA CCAGAGCTCG CGAGCCCCTT GCCACCGAGG CCGGCGGGAT GGAGACAGGG ACCGGCTGCT 001040 001041 GGGGTTTGGG AGGGGCAGAG ATTGAGGAGC CAGTTGCTGT GCCCTGTTCT GGCAAAAGAA CAAGATGCGT TGCAAGCCAG 001120 001121 AATGATGAAT TCCACTTTTC ACGTCGCCTC CGTGGCATTC TGCCTAAATG ATGGGCATGG AAATGGTGCT GAGGGATGTG 001200 001201 GGCTGAATCG AGAACACAGG GACTTTTGTC TTCAGGGTGA GAAATGTTCC GGTCCTTAAG GAAACATCGT GCAGCAGTTG 001280 001281 CATGGGTCTT CCAGGCGTTC CTCCCAAAAC ATTATTTTTT TTCTTTCACT ATTGAGTTTT AAAACTTAGC GTTCTGTCGC 001360 001361 TAGCATTGCA TCTTAGTTAC ACATCCTCTC CCACCCATAA CGTCAAATTT AGGAGACGAT ACATCCCCAA GCTTTCCTGC 001440 001441 ATTATTTTTT GCAGTAACTG GTTATTCAGT TTACTTTCTT TAAACTATGT CCTTCTCAAA CTAGTCTCAC CTGTTCGTTA 001520 001521 CTGTCGCACA TTTCCTGCGA ATAACACGTT TCTGTAGTTC TGTTGTTAGA GCCTGGCATA CCTCTCCCCG TTCCTCTTTC 001600 001601 CCACAAGGTC ATCATGCAGA GGGGATTTTG GTCTGAGTTA AAAGCCAGGT ATTCTTTCAC CATCTTTTCT GTCGATAGTC 001680 001681 AAACTACTAC AAAGACTACT CAAATTTAGT AGTTTCTTAT TTCCCTATAG CTTCGTTATA TTAGAATGGA TAACTTATAT 001760 001761 TTGCATTACC TTGCTGTAAT GAACACACAC CAAGTTTTCA TTTAAAATTA TCAAGGACAA ATGTCCTCTG AATTTAAAAA 001840 001841 TGTGTATGTA GTAAAATATA ACTCAGCATT TCTTGATTAC ATATCATTAA AATATGAATG GTACTATCTG AGCCACCAGA 001920 001921 ATCAGCAGTG AAGGTATTAT ATTAATAAAA AGGACTAAGA ATCAGGACTG TTTTAAGGGA ACTGGAACCG AAGAGGATCT 002000 002001 ACTATTTCAT CCTAGGCTAG TTAACATGAA ATAGTGAATT AAAATTGAAA GAGCTTACAT GGATGCTTCA TATCTGAGCT 002080 002081 ACTTTGGCAG GGATGTTTCA AGAGGATGTA GGTAAGTATG GTGTTCACCT AGCTTTCCAG AAGTCTCATA TTTTGTGTAA 002160 002161 AATTGGTATG CTTATTCATG GTTACTTTGG GTTAGTAGAA GCTATACTTC TTTTCCAAGG AAAGACAGAC TGTCTTAAGA 002240 002241 TTCTAACTGT GCATCTTGGT GATAAGAAGT TCTTAGGGTT GTTAAATAGA GCCAGGAAGC GTGAAGCTTT CTCTCTAGAT 002320 002321 CATGACAACT CATCTAGTAC CTTGCATTAC AAAGGAGCTC TAAGTCCATT TACTTTGCAA GGAATGAAGT TCCAGTGATT 002400 002401 AATGTTTTTG AGAAATTTGT ATTGGGATTG TGGGGTCCAG AAGGTTGCCT TAAGTAACTG TTTTCATGAC TCCTAGGTCC 002480 002481 CTAGATGTTG AGAAGCTCTG GATTGAAGCT GTCACAAAAA TAGTGAGTGG GCTCCGTAGT CACTCCATTT AGCATAATAC 002560 002561 AGAGTAGGAC AGCTTTGTGA CATTTCTCAG GCTATTTCCC CTGACCTCTC ATCAATGCTG ACGTTTTTGA TAAGAAGGGG 002640 002641 TATAGAGACT GCAGCCCTTG GGGTGGTTAC AGTTCATTTA TTTACAGGCC TTATATTGAC AGGCCTCAGA TTTCATGCTC 002720 002721 AGTACCATAA AGGTTGATTT TTAACCACCA AGAGGCAAAA GAAACATGAC AGGTCGGAGC ATATTTTCTC ACCTATTCTG 002800 002801 GCTTAAATGA TGGTACTTAC CTGATTTGTG GTTGTAGGTG AAATGTTGGG TGAAAGATTA GCTGCTATAA AAAGGATGTC 002880 002881 AGGACGTGTA GAGAATTTAG AGGACTTGGG TGGGAGATGG ATGTCTATTT TCTAACCCCT TAGTCATGTT CATTCCGATG 002960 002961 CCAGCATAAA CTCTATTTTG AGATGATTAT AGAAATAACT TATATCTTCA TTTGTTTGTG GGAAATAAAA AATAAAAATG 003040 003041 ATATAAAAGA AATTTGAATT ATTCCCAAGA GCTGTAAATC TGTAAGATAG TGAAAACTTA ACGCAGTAAC TGACACTGCA 003120 003121 GGATCCCTTT AGTTTCCAAA GTGCATTGCC AGGAGAATAA AAAGAAAGAA AATCTTCATT TCTCCTCTCT CCACTAAATC 003200 003201 TGAAAGGGAG TTATCTCACC TATAGCCAGA TACCTTCAAT TATCGCACTT GTGTTACCGT GGAAACCCAA GTCCATCCTT 003280 003281 TCTTTCTGTA AAAGGTGTTG GAAAAGGTGG TATGAAGTGG GAAAGGTACT GTATTCTGGG ACTTCCTGAC ACCAGCAAGA 003360 003361 AGCAAATATG CAGATAATTT AATAGAAACA AATTAGTAGA GGATGTTTGT AATGCGAGGG GTACTTTTCG ACTGTAAAAC 003440 003441 CCTGATTCCT AATGCTTCTT ATTAAAGCCT GCATGCCTCT GATTAAACAT AAAGGGGAAG GGCATGTCAA GTACATTTAG 003520 003521 CACCTGTGAA ACGCTGCTGG CAAGTATAAG GAGAGCAGAC GATGGTTTCT TGACCTGTGA GGCTCCTAAT ACAGTTGAGA 003600 003601 ATCTGCAGTA TATATGTGGA GTGGAAAGGA AGGGGCAAAA TAAACTTTGT TCTTCCTTTA AAAAATGTGA TATGTCTCAG 003680 003681 TGCTTTTGAA AAGAAAAGGA ATTAGAATGC AGAAATTAAG AGTATGGAAA CAACTCAATA AAAGAAACGT ATGGGTGGAG 003760 003761 AGAGTAGATG TTTCAAAAGG CCATTTTAAT CAGAAAAAAA ATCTGAAAGA AAAGACGTAA TGATTAAAAT GTAGGCAGAA 003840 003841 AAAAGAAAAA GCCTGAAGAA TCTTAAGAGC TAGAGGATTC TGCGGAAAAC AGAGCTTCAG TGTGGTTCAT TTAACAAAGC 003920 003921 AGAAGAGCAG GCACAGTGTT GCTTGCGTAC CCAGCAGTTT CCCTTTATTT TTGCCAAAGA AGCTGGGATG AATCAGGATT 004000 004001 GGACTTTAAT AGCattgctt tccctctgcc cacggttagt ccaaaagtag gcacgtgact cagttcttgt cattggaatg 004080 004081 gggagaaggc tgctagggct ggagggattt ctaggatatt gacaagagtg aggaaatatc cccgttttct gatgtcgctc 004160 004161 tctttgcttc ctgctttaca cattgaaata tgagaatgtg gcctccattt gggggctatg atgcattatg acattatggt 004240 004241 gcaatactgt agaaagccag caacttcgga tggccaggga ggaggatggg aagaacctag gtcctgcatg acaacattgg 004320 004321 acagtcaaac caacattaga actgcccaca tttggactta tggctaagta aacagctggt gtctttcaat ttaagtgtgt 004400 004401 gttggtaagg ttttctgcat cttacagcaa aatacatccc acctgTTAAC AAAAAGTATG AGGGATTCCA GCCAAAATCG 004480 004481 GGCTTTAAAA AATCAGCAAG CATTTGTGAG CACTTTCATT TCACTAATAT CTGAACGATA GTTCAAAGAT ACTATaatat 004560 004561 taattgagta attactgtgt atatttttta ggctctgggg ataaaacaat aagcaattag ccaaaagagc ttgtattcta 004640 |
Predicted Small Protein
Name | NONHSAT034832_smProtein_3503:3688 |
Length | 62 |
Molecular weight | 6807.7216 |
Aromaticity | 0.0819672131148 |
Instability index | 50.1655737705 |
Isoelectric point | 6.09393310547 |
Runs | 11 |
Runs residual | 0.0275108347466 |
Runs probability | 0.0299818535113 |
Amino acid sequence | MSSTFSTCETLLASIRRADDGFLTCEAPNTVENLQYICGVERKGQNKLCSSFKKCDMSQC F |
Secondary structure | LLLLLLHHHHHHHHHHHHLLLEEELLLLLLLLLLEEEEEEEELLLLEEEELEELLLLLLL L |
PRMN | - |
PiMo | - |