NONHSAT033446
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033446 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1885 nt |
Genomic location |
chr13+:43494624..43502073 |
Exon number |
3 |
Exons |
43494624..43494804,43498959..43499030,43500442..43502073 |
Genome context |
|
Sequence |
000001 CCACAGAGCA ACATGAGGGC CCAAGAAATG GATGCACCAG CTATTGAGGA AGACAGATGG ATAATAGGCA GGTAAAAAGG 000080
000081 AAGGAATTAC TAGATAGTCT CAGTAGAAGC CCTTCACCCC CATATACCTG CTCCTGCTTT GAAAATGCAG GTGCTAATTC 000160 000161 ACCAAACACC AACAGGAAAT GGTAGGAGTA TAATGACCTC TTCCTAAGGA GTGTCATAAT ATCTTCCTGA CATTTAAAAA 000240 000241 CATGGTCTCT ATTAGGCAGC ACCCTGCAAA GTAATTCACT TACCCATGTT GAGGATTGTG GGCCACAAAC AGCACTTTGA 000320 000321 CAGGCACTTC TGTCTGGCGA TTCTGTGTTC AGTTTGCTCA AGAACTCAGC GGTTTTGCTA CCAGAAACAC AAACAGGTGT 000400 000401 TAGTGCCTTC ACAAAAATAT GAACATAATT CTTTATTTTT CCTTTGGATA CTAACCTAGA CTTATTTGGG TGATGATTAA 000480 000481 AATTATCTTC AGCAGAACAG AAAGTTACGT TGAGAACAAG GTGTAGCAGA AATCAAAACA AAATGCTATT GCAAGATTGC 000560 000561 ATTCTTCAAG AACAATATTA CAAAATTATA AAACTAGCTT TATGAAATGT GAGCTTATGA CCTCATTTTT TCCACTTTAT 000640 000641 ATTACTGACA TAAATACAAG TCCTCTCCCA GAGCACATTC CACAGCATGC AGCCCTAATT TCCTATCTGA ACATTTAATG 000720 000721 CTTAACACTC AGACTTCAGG GTGGAGCTGT GGAACATTCA CGCCCTACAA CATCCTGCTT CACACCAGTT TTACATTAAG 000800 000801 CCCTTTACCC TCTCATCTGC CTCATGGCTT TGACCACTGT TAGGACACAG AGACCCTCTA ATCCAGTAGC TCTTTTCCAT 000880 000881 TTATGGATCA TGGAGCCCTT TTGGACTCTG AAAGCAAAAG TGAACCCTCT GTTAACAGAC ACACACACAC ACACACACAC 000960 000961 ACACACACAC ACACACAGTC CTTTGCATTT TGTTTCAGAG AGAGGATAAA CCCTCCATAG GGTTTATCTA TAGAGGTTAA 001040 001041 AAAGTGCTGC TGATTCTAGA CTGCATTTCT AATATCTCTT TTTAGCTCTG AAAAATTGAC CTAGAAATGT CCTCAGTTTA 001120 001121 AATAAGAAGT TCTCTGTTTT TACCTTAAAA ATCCAAACCA CCACCCCAAT TTCCCCTCTC ACTTATGCCA AGCATAGAAC 001200 001201 ACTGGAATTG TTTCCTAGTC CTTACCTCAG TGCCTGGCCC ATTCTGCCTA CCCTTGATTA ATTTCTACGC CTTTGTCCTT 001280 001281 TTCTCATGTA ATTTGTGTGA TTTTTATCTC TTCATTGCAC ATTCACAGCC ACATACCTCA TTGAGCACTG ACTTACTTTG 001360 001361 CACCAGACTT GCGCAGCCTG TTCCCATCTC CCTCCCTCCT CCTGCTAGCC CTCTGCTTCC CCCTAATATT TTAAGCCCAA 001440 001441 TGCTAAGATC TGATTCATCA AGTACTTAGG ACATGGGCAT CAAAGGAAAC ACAAAGTATC TGGTAGAACA AATGGCATCC 001520 001521 AGTGTAGGAG CAAAACAAGG AATTAGAAAC TAAACAGGTG CCAGCATCAC TTCAAATATT ACTTAGGTAG AACATGGCAT 001600 001601 TTGAAAAAGG TCAGAAGCTT GATCTGGGGA AGGAAGAAAT AAAAGTGAAG CAACATACAG AACCCTGAGA AACATTCAGC 001680 001681 AGTTGAGACG AGCAGCCTTT CCATTTGTCT TAGATTACTT ATCTTGCCCA GAATAGACAA GGAGACTAAT GAAGTCACAG 001760 001761 AGTGTGGAAG CTGCCCCATT GTCTGGGGCT TTATGAAGTC ATCAGTCAAA AGTATAAAAA GAAGAGTGAT GCCAGAAGTT 001840 001841 TGGATGAGAT CTCTGAATAT CCTAAGCCAA GTGCAGGCCA TAGGA |
Predicted Small Protein
Name | NONHSAT033446_smProtein_1184:1468 |
Length | 95 |
Molecular weight | 10361.0627 |
Aromaticity | 0.106382978723 |
Instability index | 94.3980851064 |
Isoelectric point | 5.72198486328 |
Runs | 9 |
Runs residual | 0.0330712303423 |
Runs probability | 0.110806885317 |
Amino acid sequence | MPSIEHWNCFLVLTSVPGPFCLPLINFYAFVLFSCNLCDFYLFIAHSQPHTSLSTDLLCT RLAQPVPISLPPPASPLLPPNILSPMLRSDSSST |
Secondary structure | LLLLLLLEEEEEEELLLLLLLHHHHHHHHHHHHHLLHHHHHHHHHLLLLLLLLLHHHHHH HHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |