NONHSAT033357
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033357 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2635 nt |
Genomic location |
chr13-:41447704..41455429 |
Exon number |
2 |
Exons |
41447704..41449604,41454696..41455429 |
Genome context |
|
Sequence |
000001 TCAGCCTGAT CTAAGGAAGG AGACCACCTC TCTTATTGTC TCATACCTCA GAAAAAGAAT GAGGAAGTAA AAGTTAAAGA 000080
000081 AAGGCAAAAA TGAGATCAAT AGACAGCCCA GCACTGCACT TCAGGCCTGG TCTGGTAGTT AAAAATCAAC CCCTGACCTA 000160 000161 ACCACTTGTA TTAGCTATAG ATTCCAGACA TTGTATGAGG AAGCATTGTG AAACTTTCTG CTCTGTTCTG TTCTGTCTTG 000240 000241 ATTACCGATG CATGCAGCCC CAGCCACGTA CCCCATGTTT GCTCAATCGA TCACGACCTT TTCATGTGGA CCTCCTTGGA 000320 000321 ATTGTAAGCC CTTAAAAGGG GCAGGAATTT CTCTCTCAGG GAGCTTGGTT TTTGAGACAC AAGTCTGCTG ATGCTCCTGG 000400 000401 CCGAATAAAG CTACTTCCTT TCTCAACCTG GTGTCTGAGG GGTTTTGTCC ACAGCTTGTC CTGCTACATT TCTTGGTTCT 000480 000481 CTGACTGGGA AGCGAGGTGA TTAGCAGACA GTCAAGGCAG CCCCTTAGGT GGCTCAGGCC TGCCCTGTGG AGCATCCCTG 000560 000561 CAGGGGACTC CGGCCAGCTT GAGTGACACG GATCCTGAGA GCACTCCTGG GTAGGCATTT GCCCCGGTGG AACGCCTCAA 000640 000641 CAGAGGAGTG CATGGCAGGC CCCTGCGGAG GATCAACGCA GTGGCAGAAC ACCAGAAAGG AACTGGCACT TGGAGTCCGG 000720 000721 ACATCTGGAA TATGGTGATC AAGTGTGGAT CAAGGATTGG AATGTAGTCC CCTTGTGACC ACGGTGGAAA GACCCCAGAC 000800 000801 CGTCATCTTG ACCACCCCCA CAGCTGTAAA GGTTGAAGGA ATCCAAGCCT GGATCCACCA CAGCCATGTG AAACCTGCAG 000880 000881 CCTCTGAGAC CTGGAAGGTG AGACCAAGCC CAGACAACCC CTGCAAAGTG ACTCTGAGAA GGACGACAAG CCCTGCTGCA 000960 000961 GTCACACCCA GAAGCTGACT CATCTATGCA CAGCCAAAGC ATGAGGAAAC TCATCGTGGG ACTTATTCTC CTTAAAATTT 001040 001041 GGACTTATGT AATAAGGACT TCCACTGATT TTCCCCACAT GGAGGACTGT TCCCAATGTA TTCATCAGGT CACTGAGTAG 001120 001121 GGCAACAAGT TAAAACAGTT TCTGTTTTAT AGTTATTATT GTTGCGGGAC AATCAAAGAT GGGAGAGACC AAACAAAGTG 001200 001201 AGTTCAGGAA AGGTCTTTAT TAAAAGATGA TCACTTGGCT CAGTAGGATT AGTGTACAGG AAAGTCTGAG CCCTGGACAA 001280 001281 AGAAAGCAGC CACCTTTTAA GCAGTCAGTG GCTGGGAGCT ACGTGATGCA GGAAGCACAC TTAGAGAAGC AAGAACAAAG 001360 001361 GCAGTTGATC AGTCTTTTAC ATTTATCTAT ATTACATGTT CCAAATCCTT GGGAAACCAT GTTTCTGTAT AAACCTTGTA 001440 001441 ACTTTGCAGC TGCACGGGGG AGGTGAAGCA GAAACTCGCT GAGCCTCAAG GAATGTGAAA CTAGCAAGTA CAGATAAGGC 001520 001521 TCAAATGTAT TACATGAATC ATTATCAATC TGTCTTGCAG GAAGACCTAG GTAGTGAAGA TGAAAGTGAG AACTCCCACT 001600 001601 AATAAGTGAG ATTCTCAAAG GGGGGGAATG AGGAAGGAGA CCACCTCTCT TATTGTTTCA TACCTCAGAA AAAGAAGGAA 001680 001681 GAAATAAGTT AAAGAAGGCA AAAATGAGAT AAATAGTCAG GCAGCCTGGC CCCGCACCCC AGGCCTGGTC TGCTAATTAA 001760 001761 ATATCAACCC CTGACTAACT GCTTGTACTA TCTATAGATT CCAGACATTG TATGAGGAAG CATTGTGAAA CTTTCTGTTC 001840 001841 TGTTCTGTCT TAACTACCAA TGCATGGGGC CCCAGCCATG TACCCCATGC TTGCTCAATT GATCACAACC CTTTCACGTG 001920 001921 GACCCCCTTA GAACTGTAAG CCCTTAAAAG GGGCAGGAAT TTCCCTCTTG GGGAGCTCAG TTTTTGAGAT GCAGGTCTGC 002000 002001 TGACGTTCCT GGCCAAATAA AGCTACCTCT TCCCTCAACC CAGTGTCTGA GGGGTTTTGG CCATGGCTTA TCCTGCTACA 002080 002081 GATCCAACTC TGTGTTCCTT CCACCATTAT CCCATAACCT TAATATCCAT TCCCATGCCT GTTCTCCAGA TTGCTGTTTA 002160 002161 TATAAATCAG AGAACTCCAA CAGTTCAAGT ATAGTGCACT TCCTCATGGG TCACACTCTC AACCTCATCC TTAGGGGGCC 002240 002241 ACCAGGACTT TAGTTATAGG TTTAGAAGCA AACAGGTGTT GGGGGTGGCC TCTGAGGAGA CTCAACATTA TCTTGCCTGG 002320 002321 CAACTGGCTC AGGGGAGGAC ATCACTGTTG CTGCAGGCAG CATAGGGTTT TTCTCCTTGG ACAAAGGTGG AAAGACTGAT 002400 002401 AACAGCATAG GTCAGGGAGG GGATGTTGCC ACTACTGGGG ATGGGGAAGC TGTTTCTTCT GGCAAAAAAG GTTCACCGGA 002480 002481 GTTTACAAAC TCAGTGTCCT CAGCTTCATC AGGGTCCTCC CACATGTCCC CATTCCAAGT TGCCAGGTCG CATGCTTTTC 002560 002561 CAACAAATGC CCTCACTTTA ACAGTAGACA CCTGGTGAGG CTGTGCATGC ATCTTTCATT GCTGGTCAGC CACTC |
Predicted Small Protein
Name | NONHSAT033357_smProtein_1226:1465 |
Length | 80 |
Molecular weight | 9134.5118 |
Aromaticity | 0.0886075949367 |
Instability index | 49.3430379747 |
Isoelectric point | 9.74029541016 |
Runs | 11 |
Runs residual | 0.00104040228889 |
Runs probability | 0.0290022642963 |
Amino acid sequence | MITWLSRISVQESLSPGQRKQPPFKQSVAGSYVMQEAHLEKQEQRQLISLLHLSILHVPN PWETMFLYKPCNFAAARGR |
Secondary structure | LLEEEEEEEEELLLLLLLLLLLLLLLEELLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL LLLLEEEELLLLHHHLLLL |
PRMN | - |
PiMo | - |