NONHSAT028275
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028275 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2510 nt |
Genomic location |
chr12+:51895612..51902980 |
Exon number |
4 |
Exons |
51895612..51896162,51897813..51897904,51899619..51899714,51901210..51902980 |
Genome context |
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Sequence |
000001 gactttttaa taatagtcgt tctgactgat gtgaaatgga gtctctttgt ggttctgatt tgcatctctg atgatgcatg 000080
000081 atgttgacca gtttttaata tgtttgttga ctgcttgtat gtcttctttt aagaagtgtc tgttcatatc ctttgcccTT 000160 000161 TCGCttctat gcaccaataa cacccaggct gagagtcaaa ccaagaacac aatcctgact acagtagcca taaagaaaat 000240 000241 gaaatacctg ggaatacacc taatcaaaaa catgaaagca ctctctagag ggagaactac aaaacattgc tgaaagaaat 000320 000321 cagagatgaT TCTCTGAAAA AGAAGTCAGA TTAGAAATGA TTCTCTGAAA AAGAAATCAT CTCTGATTTC TTTCAGCAGT 000400 000401 GTGttttttg tttgtttgtt tgttttgaga cagagtcttg ctctgtcgcc aaggctggag ggcaatggca tgatttcagc 000480 000481 tcactacaac ctcctgctcc tgggttcgag cgattctcct acctcagcct cccgagtagc tgggattaca gGAGGCTGAG 000560 000561 AAAATGTTAG AAATTGGGGG AGACAAGTTT CCCTTAGAGA GCAGGAAGTT ACTAAGTAGT CCTGGAAAGA ACATCAGTTG 000640 000641 CAGATGTGAC CCCTCTGAGA TTAATATATC TGATGAAATG CCTAAAACTA CAGTTTGGAA AGCTCTCAGT ATGAATTCTG 000720 000721 GAAATGCAAA GGAAAAGAGT CTCTTCAACT AAGAGTCTTT GCTGGGATGG AAGATTTGGG CCGTGTGGTG CCTCAGGGAA 000800 000801 GTTCTGGTTA CAGAGAAAAT GGCGAGTCTC TCAGAGAAGA AGCAAGACCA AGTCTGGCCC TGTCCTTGGT CATCTCAAAG 000880 000881 CCATGCCGAA GCATTCAGTT ATTCTTGGTG TGCATTGGAA GGCATCCAGC TATCCCCATA CCAGCAGCCA GTCACCAGAT 000960 000961 GTGAATGTGG AAGCAGAAGA CCACCTCCTG TTGGTTCTTC TCCTCTTCCT TCTTTTTCTC TTTAGAACGG CCACCATTGA 001040 001041 AGACCTAGCT TCCCATTTTC CAGACGTTTT CTCTGAAATT CTCTGCTGGC CTGCCAAGCC ATATGGATTC ATTCTGCCAC 001120 001121 TGAGGAGTCC TTCAGTGAGG TCCCTCTTCC TAAAGGACAG AGTGGGGAGT AGGAGGGGAA CAGAGAGGAC ATCCTCTCTG 001200 001201 GCTCTCCAGT GCTCTTAGTG TCTACAGGCT CCTAGGCAGC CCTGGGCCTT GGTTTGATTA CCTCCCCTGG GGGATGCTGG 001280 001281 TCAGACCCAG AGGTTGTCAG GAGGTCAGCT ACCAGGAAGA TCCATGATCT GGGCATTGGC AGTGCCTGCC ACCACAGCCA 001360 001361 GGAAGATGCC TCTGACCTGG GTGCATCTCC ATCACTCCTT AGCAGCAGCC TGCATAACTG GCAAGAATCT TGGATGATAC 001440 001441 AAGAGCCAAG AAGGGACATT TGAGTTGTGT CGCTTAGATA GGAAAGGGAT CCAGGGAAAA TCAACAGTAA GTgaggatga 001520 001521 gcagtgtctc ttggttttca ttgaggatag agtaagagat tgagtttaga ttgcaacaga aggaattagt ttagatacca 001600 001601 ggaagaactt cctagccTGA AGATTTGTCA TAGTGTCTGC TTTCTAGATA TCTGGGAAAG ATTTGATAAT AGTTGTTTGT 001680 001681 GAATAGAAAG GAGGATATGA TGTTTTTATT GGCCATTTTG CGGGACTCTT CGACTTCTTG CTGCTGTCTC TTGAGGATAC 001760 001761 ATTCCAATTC CATCCTGGCG AGATCCAAGT GCTTACGTAC TGTCTCCTTA GCTGCCTTAG AGTAAACGAT CATCAGTTCA 001840 001841 ATGGACCAAA ATCACCTTCA GCCATGTGGT TTCTTCATCA TCATGGATTT CTTTTGGTTG ACAAACATTC TGGCTCTCAG 001920 001921 ATGCAAAAAG TCACACTGGG AAATGAACTG TAAGTGGTGA AATTAGTTTT GGTATTTAAT TTAAAACTAC ATTTATAGTT 002000 002001 TTTCTCTTCT CTTCTATGTT GCAATGAATG TAAAGTATTT GGGATCCAGT GCTTATAAAC CTTTCCTTCC TTTGTGCACA 002080 002081 GAATGTAACT AGCAAGCCCA TTAGCACCCA GATAATTCTA TCATGTTAGT TTCCCATCCT GGAAAATCTT TGTACAGTGG 002160 002161 GAAGTTCCCC GATGTGTTTT TCTTTCTTAG GTGAAGGGTT GGCTATATCA CTTTATTGAA TTTTGCATTC CTTAGACTTT 002240 002241 TAAAATATAC TAATGTATTC TAGTCTTACT CTAAAGACCT TTGATGTTAA AGGAATCCTT CATTTATTTC ATATTCCCTA 002320 002321 TCTCATAGGG CCACAATTAT TTTAATAcag agatgatttt caaaatattt taacaactgg tacaggacag atgccagcca 002400 002401 ctcagaaggg atgcctgctg taaacaagca gtatgtatgg ttgtaccaat gcctattggc tgaacattaT GCTACTTTCA 002480 002481 GATATTAAAA TGGTGTTCCT TTGAATCGTG |
Predicted Small Protein
Name | NONHSAT028275_smProtein_818:1024 |
Length | 69 |
Molecular weight | 7542.4159 |
Aromaticity | 0.102941176471 |
Instability index | 88.3455882353 |
Isoelectric point | 6.51873779297 |
Runs | 11 |
Runs residual | 0.0212639109698 |
Runs probability | 0.0475261357615 |
Amino acid sequence | MASLSEKKQDQVWPCPWSSQSHAEAFSYSWCALEGIQLSPYQQPVTRCECGSRRPPPVGS SPLPSFSL |
Secondary structure | LLLLLHHHLLLLLLLLLLLHHHHHHHLLHHHHHHLLEELLLLLLEEELLLLLLLLLLLLL LLLLLLLL |
PRMN | - |
PiMo | - |