NONHSAT028231
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028231 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1623 nt |
Genomic location |
chr12+:51442657..51454204 |
Exon number |
4 |
Exons |
51442657..51442968,51450133..51450285,51451815..51451911,51453144..51454204 |
Genome context |
|
Sequence |
000001 TGATTGCCTA TCTCTTCTTG ACCCCAAGAC CTTCCTTGGA TTTCAGAAGT GTCAAGCCTT GGGATACAAT CTCCGAGACT 000080
000081 CCTGCTTTAC ATTAGGGACT CAAGGCGTGA GGGAGCTTCT AGGACTGATT CCCAGATAGT CTCTTTGATC TTCCTTGTAG 000160 000161 GTCTTCAAAG CTTCACCTTT CTCCAAAGGC AGATGTGAAG AACTTGATGT CTTATGTGGT AACCAAGACA AAAGCGATTA 000240 000241 ATGGGAAATA CCATCGTTTC TTGGGTCGTC ATTTCCCCCG CTTCTATGTC CTGTACACAA TCTTCATGAA AGAAAGCCTT 000320 000321 GAGCCGGGCC ATGCTTCTCA CATCTTACCT GCCTCCTCCC TTGTTGAGAC ATCGTTTGAA GACTCATACA ACTGTGATTC 000400 000401 ACCAACTGGA CAAGGCTTTG GCAAAGCTGG GGATTGGCCA GCTGACTGCT CAGGAAGTAA AATCGGCTTG TTATCTCCGT 000480 000481 GGCCTGAATT CTACGCATAT TGGTGAAGAT AGGTGTCGAA CTTGGCTGGG AGAATGGCTG CAGATTTCCT GCAGCCTGAA 000560 000561 AGAAGCTGAG CTGTCTCTCT TGCTGCACAA CGTGGTCCTG CTCTCCACCA ACTACCTTGG GACAAGGCGC TGAATGAACC 000640 000641 ATGGAGCGGA TGGCATTGTC CTGCAGTCGT ATAGTATAGC AGTGCAGGAA CAAACAGCAC TTGCCAGCAA AGTCTGTGTG 000720 000721 TACTGTTAAG TGTGTGGGAG GCAGAGAGAG GAGCAGGGGC CATGGGCTTC ACAGCATGGC ACACATGTGG GAACTGCAGA 000800 000801 CATTCCTCTC ACAGCTAGAA CTGAAACAAA CCCTCTTGCT AGGGGTGGTC CGTGTGAGGT GTCATCCTGT CCCCCTCATA 000880 000881 ATTACTAATA GCTGGAACTG GCAGCAGCCT CTACTGGGCT TTTACTGTGA TGTGTTCAGT TCATGTCCTA GGAAGTCAGC 000960 000961 TTTTGCCCCA GGTGGGAATC CTTATTTGGC TTAGGACTGA TCCACTTCCA TGTTACTTAC ATCTGTGGGT TTTTGTTGTT 001040 001041 GCTGTTAGAA AATTTGTGGC TGGTGAAAAC AGCACTCCTT TGGCTGGAGC ACATGTGTCC GTGCATGTAC TTGGGTGTTT 001120 001121 CCCTCCATCC TTTCTGATAT GACCAAAAAT CAAGTTGTTT TGTTTTTTGT CACCTTCACT GGCATGGGCT AACCACTTCT 001200 001201 TTTTCAAACC CTCTGAACAC CTTTTTCTGA TGGGTAACTT GCAGGAATAT TCTATTGGAA AAGATAACAG GAAGTACAAG 001280 001281 TGCTTCTTGA CCCCTTCCTC AATGTTTCTA GCCTTCACTC TCCATTGTCT TTTCTGGGCT GTATTACAGC CCTCTGTGGA 001360 001361 TCTTCAACTC TGCTGCCTCC ACTGTGATGC AGCAGTCCAA CTGTAACTGA CAGTGGCTGC CTTCTCTGGG CCATGGATCA 001440 001441 CACCTGTAAG GTACTAATTA CTGCCCAGCC TGGGGAGATC AGGAGAGGTC TGCATAGTTA GTAAGTTGGG TTTAGCTTTT 001520 001521 GTGTGTGCAT CAGTGACTTA GAGTTCTGTA ATAACTTATT GTAAATGCAT GAAGCACTGT TTTTAAACCC AAGTAAAGAC 001600 001601 TGCTTGAAAC CTGTTGATGG AAA |
Predicted Small Protein
Name | NONHSAT028231_smProtein_206:505 |
Length | 100 |
Molecular weight | 11190.5168 |
Aromaticity | 0.171717171717 |
Instability index | 53.9638383838 |
Isoelectric point | 6.88995361328 |
Runs | 16 |
Runs residual | 0.027926322044 |
Runs probability | 0.0483682211624 |
Amino acid sequence | MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKESLEPGHASHILPASSLVETSFEDS YNCDSPTGQGFGKAGDWPADCSGSKIGLLSPWPEFYAYW |
Secondary structure | LEEEEEEELLLLLHHHHHHHLLLLLEEEEEEEEEELLLLLLLLEEEELLLLEEEELLLLL LLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLHHHEEEL |
PRMN | - |
PiMo | - |