NONHSAT028143
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028143 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3084 nt |
Genomic location |
chr12+:50222326..50234937 |
Exon number |
3 |
Exons |
50222326..50222527,50222718..50222866,50232205..50234937 |
Genome context |
|
Sequence |
000001 AGATGTTCCC AGGACGCGAG CTAAGTCTGC CCGGCCGGCG CGCGCCGCTT CCGCTTTGGT GGGAAGGACC TCCCTTCCCC 000080
000081 CTTATAGAAA CACTTTCTCC AGGCCGGGCC GGGCTTGGTA AACCTCAGCC GTGCCTGGGT AGAGGACGCC GGGCTGGGCC 000160 000161 GAGCGGGGGT GGAATGAGGG CGTCTAGAAC AGAGAAAACT AAGATGGGGT CGTCCCCCCA GTAATCTGGA AAACAGTTAC 000240 000241 AGCAACAGGC TCCTCTCATC AGACGGCAGT GCTGGTCGTT TCCTCACTGG TTTGCGGGGA AGGCTGGGCA GAAAAAGGAT 000320 000321 GCAACCTTGT TCTCAACCAC TTGCTATCTC GTGATTCAGG GATTGGATGA GTCTCTATGG TTTGTTTTGC CCTGAAGAGC 000400 000401 AGAAGGCTTC TGTCCCAACT GGTGTTGCCA AAGCAACATA TTAATTCCAT GCCATGATCC TGGGTCAAGA TCTGCACAAT 000480 000481 CTGATTGGGC ATGTCACCTC GGATGGCAAG GGAGTGGAAG TGGTCAAAAT CATGGAGTCC CAGCTTTCGG AGACGCCTTG 000560 000561 CAGCTGCCCG GTAACACTTC CAGGGTTGGG GCTCCACAAG GAGGTAGTGG CAGAGGGAGG AAAGATGGGC CAGGAACTCC 000640 000641 CATAGGCCAT GGTCTCCATG ATTCAGATGA ATCCACATGG TTATTGACAT GCAGAAGCCA ATGTCAAAAA CTGAACGTCC 000720 000721 AAATTGGCTT AAGAAAGAGC TCAAGAGAAC CTTCCGGGTC CTTTGATTCA TGAAGTCCAG GGTGATAAAA GTCAAGGCAT 000800 000801 CAGGAAAAGG ACATTCTTTT TCGGCTCGCT TCACCAGGAC TGGATCTATG TCGCAGCAGA GGAGACGGAA TTCTCTTGAG 000880 000881 GCATCTGAGC AGGTTTCCCC GTCAGGTAGG GAGAGGAAGT GTTTGTATAG AGCCACACTC AGATCCTAGA GGAATCCAAA 000960 000961 ACAGCTTTGT CACTGCAGTT CTCAATCAGT GAATGGAAGA GAAATCTGTA TCATTCTCCC ACTGAGAATG CCACTTACCT 001040 001041 CTGGCTGTAT AGGATGTGAG GTTCCTAAAC CATAACCTAA AGAGGTTGTG CAAAAATTTT CTACAGAGTA GGCTCTCAGT 001120 001121 GCCCTCCAGG GGTCACATGC TGTAATGCAT CATCCCCATA TTTTCCTGAC ACTGATGATA GATTGGGTTG TATAGCTGAA 001200 001201 AGTTACAGCC AAATGGATGC AGCAAAGGAA CCTACAGCAG TATTTCCCAG CTTAAGTAAT ATGCTGATAA ACTCACTCTT 001280 001281 TTTCTGGGTA TCTCAAGACC CCAGGGCGGA AGAAAGGGGT CCAGAGGCAT AACCAGTGTC TCTTACCAGG AAAGTGAGGA 001360 001361 ATACAGCAAG CACAATCTTA CAAAAACCTG CTTCTCAGAC CCGCGGTGGG GGAAGTCTGG ATTCCAAAGT CCTCATTCAG 001440 001441 CCTTCACTAA AGCTTCAATT TTACTGTCTT AGGATTCACC ACCTCCTTCT GAGACATTCT GCTTCTATAA CCATCATTGC 001520 001521 TAAAAGTCAC TGCTAACAAC CTTCTAGACA AGTCCAATGA TTTGTGATTT TTACCACATT AGCACCTTTT TTACTCTTAA 001600 001601 GTCACCATCT CCTTTCTCTA ACTTTGAAtt cttttttttt ttgagacaaa gtctggttct gtcggccagg ctggagtgca 001680 001681 atggcgtgat ctcagcaacc tctgcctccc aggttcaagc gattctcctg cctcagcctc ctaagtagct gggattacag 001760 001761 gcatgcatca ccacactcag ctaatttttg tatttttatt agagacaggg tttcaccatg ttggccaggc tggtctttaa 001840 001841 ctgacctcaa gtgatccacc tgcctcggcc tcccaaagtg ctgggactat aggaatgagc cactgcacct ggccTCTTTG 001920 001921 ATTTCTATAA CCATTATAAC TAACTCAAAT TTGTGTTTTT CCACATAGTA TTTTCAAGGC ATTTTTCTGT TTACTACTTT 002000 002001 GTTTGCTTGG TGTAACAAGC ATGTGAGGAA AATATTTATT TATGCCTTTT CTGCAGGTGA AGAAAATGCA CAAtggaaac 002080 002081 cacccagatg tccagtgata gtggcatgga caaataaatg tggtataatc atgaagatag aatactaaat agcagttaaa 002160 002161 aaatgaaggc acccagcttg gtgcacaaca tggatgattc tcacaaatac ataatgttga gaaaaaaagc aagccataac 002240 002241 agaaaatata tgaaaagcat ccatttacat gaagctcaaa aatgggtgaa attaaagtac atcattcagg gaagaaaaac 002320 002321 agtacactat aaagaaaagc aaggaaacaa cagaaggcta gttgttacct ctgggtagag atagaggttt atgaacagga 002400 002401 aaaggcatat aggggaagtt gtggggtgct gaaaatgttT Attatttatt tatttattta tttttgagac aggatcttac 002480 002481 tctgtttccc aggctggagt acagtggtgt gatcactgca accttgactt cccaggctcc agagatcctc ctacttcagc 002560 002561 cttatgagta gctggaacca caggtgcaca ccaccatgcc cagctaattt ttgtattttt ggtagggatg agattttgcc 002640 002641 atgttgccca ggctgatctc aaactcccga gctcaagcaa tccaccagcg tcagtctctg aaaatgctgg gattacagcg 002720 002721 tcagccactg cacccagcAG ttttttgggt tttttgttgt tgttttattt gagacagggt ctcacttcgt cacccaggct 002800 002801 ggggtatgtg gcacaatcaa ggctcactgc agcctcgacc tcctgggttc aagcgatcct cctccctcag ctctctaagt 002880 002881 agctgggact acagatgccc accaccacac ctggctaatt ttttttagag atggggtttt gccatgttgc ccaggctggG 002960 002961 AAAGGAGTTT TTAAAATTGA AAAAAAAAAG CACCCataaa ttatggtaca tctatccaat gaaacattag gaagctgcta 003040 003041 aaaaaagaat gtggTGATAT AAATAATCTC AGAATTAAAA GCTA |
Predicted Small Protein
Name | NONHSAT028143_smProtein_2627:2881 |
Length | 85 |
Molecular weight | 8896.128 |
Aromaticity | 0.0833333333333 |
Instability index | 58.8810714286 |
Isoelectric point | 10.020324707 |
Runs | 11 |
Runs residual | 0.0030330603579 |
Runs probability | 0.0344140932376 |
Amino acid sequence | MRFCHVAQADLKLPSSSNPPASVSENAGITASATAPSSFLGFLLLFYLRQGLTSSPRLGY VAQSRLTAASTSWVQAILLPQLSK |
Secondary structure | LLEEEEEELLLLLLLLLLLLLLLLLLLLLEEEELLLHHHHHHHHHHHHHHLLLLLLLLLH HHHHHHHHHLHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiii |