NONHSAT027649
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027649 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1977 nt |
Genomic location |
chr12+:34175408..34179087 |
Exon number |
2 |
Exons |
34175408..34177094,34178798..34179087 |
Genome context |
|
Sequence |
000001 CCGGTATGTG GCCCCGTCTG GCTAGTCCCG CCTAGCGCGC CCATTTCGAG CCCAAGTTTC CAGCTCGGGT TTCCAGGCTC 000080
000081 AGAATTTTCC AGGAGTAGGT TCTTGGGCAG TGGCTGTGGG AGCTGGAATG GCGCAGCTGG AAGGTTACTA TTTCTCGGCC 000160 000161 GCCTTGAGCT GTACCTTTTT AGTATCCTGC CTCCTCTTCT CCGCCTTCAG CCGGGCGTTG CGAGAGCCCT ACATGGACGA 000240 000241 GATCTTCCAC CTGCCTCAGG CGCAGCGCTA CTGTGAGGGC CATTTCTCCC TTTCCCAGGT GGGGTCCCCA ACCTGTCCCC 000320 000321 ACCCCAGGAG AGGCCTGAGA GGTCCCAGCG TCCCCACGTC CTCCCATCCT TAGACTTCAC TCGTCCTGTT CCACCCCCTC 000400 000401 AAGCCTCAGA ACATGAAAGA AACTGGGTAT AGTCTTTTGT TCCTGTCTCT GAGATCTGTG AAATATTTAT TAAATGAATG 000480 000481 AATAAACAGC AGATCTGTCC TCCAGGAAGG AGTGATCTGG GAGAATACTC AACGGGGAAC TGAGCCCTCC TCTTGGCAGC 000560 000561 TGACGATATC GATCCCACTT TGTCTTTCCT TGTTTTAGGA TTAAAGGCAT TCGGGTGCTC CTTGGAAATA CCAGAAAACT 000640 000641 TTCCTTTAGC TCACCTGTCA AGCACCTCAC TGTGCATTTT AGGGGTGGGA TAGGGTGGAC TGGAGGGATC TTCAGCTACC 000720 000721 AAAAAGTGAC AATTTATAAT CACAAATTCC TTCCCTGGGT ATTTTTAGTG AACTGTTAAC TGGATAAACT GGCAACCAGT 000800 000801 CAAGTCACAT CATTTTTGAG TATATATTTG ACTGTGCAAG TATGTACATA TAAATATCAA AATAAGCATC CCCTGCTTCT 000880 000881 CTGGTGACac aatatagggt actggctaga aatataaagt ctgttttaga gaaagatctg atcttaaatc ttggtgctgt 000960 000961 gatttactag ttttgtgatc ttggagatgt tctgagtttc agaaattcag gttactcatc tgcaaaatga caataatctt 001040 001041 tactataggg catattgtaa cgttaataca gagggtttgg caacaatttc tgtctcaGTT TATGTTAGCT GTCATCATGG 001120 001121 AGCCTGTGGT CCAAATGTTT TCCTAAACTT AAGAGTCCCA AACAATGTTT CCATGCTTTT AAAAACTGGA ACATTTGCAG 001200 001201 TTTATTTATC AAAATAAAGG CTTTTAAAGA ACATTTCTTG GAAAATAGAA ATAGATTTTA AGTTGTTGTT GTTTATTGGT 001280 001281 TGCTGCTACC TGAACCATCA CTAAGCTGGT CCGGGGGCAA AAAATAAGAA AAACGAATCC TGTTCTGCCA AGGACTTACT 001360 001361 TAATCTTGTC ATAGAATAAC TTCTCAAAAT TTCTGATTGT TGCTGGAGAT GAGACTTGGG CTTGACATAT TTGTGCCTGT 001440 001441 CTTGTTCCTA TTACCTCTTG CTTTTACTTC ATTTTCTTTC ATTTTAAAGT GGGATCCCAT GATTACTACA TTACCTGGCT 001520 001521 TGTACCTGGT GTCAATTGGA GTGATCAAAC CTGCCATTTG GATCTTTGGA TGGTCTGAAC ATGTTGTCTG CTCCATTGGG 001600 001601 ATGCTCAGAT TTGTTAATCT TCTCTTCAGT GTTGGCAACT TCTATTTACT ATATTTGCTT TTCTGCAAGG TACAACCCAG 001680 001681 AAACAAGGCT GCCTCAAGTA TCCAGAGAGT CTTGTCAACA TTAACACTAG CAGTATTTCC AACACTTTAT TTTTTTAACT 001760 001761 TCCTTTATTA TACAGAAGCA GGATCTATGT TTTTTACTCT TTTTGCGTAT TTGATGTGTC TTTATGGAAA TCATAAAACT 001840 001841 TCAGCCTTCC TTGGATTTTG TGGCTTCATG TTTCGGCAAA CAAATATCAT CTGGGCTGTC TTCTGTGCAG GAAATGTCAT 001920 001921 TGCACAAAAG TTAACGGAGG CTTGGAAAAC TGAGCTACAA AAGAAGGAAG ACAGACT |
Predicted Small Protein
Name | NONHSAT027649_smProtein_1580:1723 |
Length | 48 |
Molecular weight | 5269.0172 |
Aromaticity | 0.106382978723 |
Instability index | 42.2085106383 |
Isoelectric point | 6.50396728516 |
Runs | 8 |
Runs residual | 0.00393617021277 |
Runs probability | 0.0759472708001 |
Amino acid sequence | MLSAPLGCSDLLIFSSVLATSIYYICFSARYNPETRLPQVSRESCQH |
Secondary structure | LLLLLLLLLHHHHLHHHHHHHEEEEEEELLLLLLLLLLLLLHHHLLL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii |