NONHSAT027230
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027230 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1776 nt |
Genomic location |
chr12+:20835231..20837006 |
Exon number |
1 |
Exons |
20835231..20837006 |
Genome context |
|
Sequence |
000001 AAACCTTGAT TGTGATTTCC AGTTTTTATT TTCTCTGACG TAGTAGAAAG GAATGTTTAC ATTGAAAATA CTTTTGTTTC 000080
000081 TCATAAATGG ATATTGTACT CCCCCCTTTC AAAGCATTAT TTTACAATAA TTCATGGCAT TTTAAAAAAT AAGGCAAAGA 000160 000161 TAATACGACA AAAAATATAC ATGGTTTCAA GGCAAATTCT CCAATAAGTT GGAAAATGTA AAAAGGATCA AGTGGATGCA 000240 000241 GCCTCTACCT AAATAATTAA AATATATTTC AGTATATTTC TGAATTAACA CCAGGTCTTC ATTATTTAGA ACTTACTAAA 000320 000321 TTGTTTTCAT TTTCTTAGTT TTACCTGTGT ATCTCCATGT TTGCAAAAAT TACTATAAGT CAAATTTTGC CAGTGAATTT 000400 000401 AACTATTTTT CTTTCCTTGC AATTAAGGGG AAAAAAGCAT TTATCTTATC TTCTCATACC CCTTGCATCT AAGTACTTAG 000480 000481 CAAAGTCAAT ATTTTCCCAT TTTCCAAATG CGTCCATCTC TAACATAAAT ATTAATTGAA CATAGAGCTA TGTTTGGAGT 000560 000561 GAGTGGACTG GCAGGACAGT TGGAAGTCCA TCACAGTCTA TTGACAGTTT CATCAAAGCT GTATAGTCCA ACTAGTGGGG 000640 000641 CAGCTTGGCT ACTATGGTGG AAGTCTCAGC AAACTGCCTG GTTTTGTTTG TTTGTTTTGT TTTAAGGTAC AGGAAATAAG 000720 000721 AGGAATAATA GTGGCCAAAG CAATTAGAAC ATCTTCATTC CAGAACTGTG TTCAGCAATC CAGGCAGATT GATACATTTT 000800 000801 TCTTTAAAAA TAAATTGCTA TTACAGCTAG ACGTCAATTG GGATAAATAA AGGGATGAAG ATCCACTAAG TTTGTGACTT 000880 000881 TCATACACAC CCAGTACATC TCAAAGGATG CTAAGGGACA TTTTCTGCCA GTAGAGTTCT CCCCCTTTTT GGTGACAGCA 000960 000961 ATATTATTAT GTTCACATCT AACTCCAGAG CTTACTTCCT GTGGTGCCAA TGTATTTGTT GCAATTTACT ACATTTTTAT 001040 001041 ATGAGCCTAT TTATAGGTGC CATTAAACTC AGGTCTTTCA AATGAAAGAG TTTCTAGCCC ACTTAGGGAA AAAGATAATT 001120 001121 GTTTAGAAAA CCATAAAATC AATGGTAGGA AAAGTTGGAA CTGGTTACCT GGATGCCATG GTTCTCTGTT AAATAAAGTA 001200 001201 AGAGACCAGG TGTATTCTGA GTGTCATCAG TGTTATTTTC AGCATGCTAA TAAATGTCTT TCCGGTTATA TATCTATCTA 001280 001281 AATTAACCTT TAAAATATTG GTTTCCTTGA TAAAAGCACC ACTTTTGCTT TTGTTAGCTG TAATATTTTT TGTCATTTAG 001360 001361 ATAAGACCTG GTTTGGCTCT CAATAAAAGA TGAAGACAGT AGCTCTGTAC AGGGATATAT CTATATTAGT CTTCATCTGA 001440 001441 TGAATGAAGA AATTTTCTCA TATTATGTTC AAGAAAGTAT TTACTTCCTA AAAATAGAAT TCCCGATTCT GTCTATTTTG 001520 001521 GTTGAATACC AGAACAAATC TTTCCGTTGC AATCCCAGTA AAACGAAAGA AAAGGAATAT CTTACAGACT GTTCATATTA 001600 001601 GATGTATGTA GACTGTTAAT TTGCAGTTTC CCCATATTTC CTGCCTATCT TACCCAGATA ACTTTCTTTG AAGGTAAAAG 001680 001681 CTGTGCAAAA GGCATGAGAC TCAGGCCTAC TCTTTGTTTA AATGATGGAA AAATATAAAT TATTTTCTAA GTAATAAAAG 001760 001761 TATAAAAATT ATCATT |
Predicted Small Protein
Name | NONHSAT027230_smProtein_356:538 |
Length | 61 |
Molecular weight | 6743.0102 |
Aromaticity | 0.1 |
Instability index | 42.72 |
Isoelectric point | 10.3908081055 |
Runs | 8 |
Runs residual | 0.0164007092199 |
Runs probability | 0.0484123829712 |
Amino acid sequence | MFAKITISQILPVNLTIFLSLQLRGKKHLSYLLIPLASKYLAKSIFSHFPNASISNININ |
Secondary structure | LEEEEEHHHHLLLLHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PRMN | - |
PiMo | - |