NONHSAT025981

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT025981

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4409 nt

Genomic location

chr12+:5023006..5027413

Exon number

1

Exons

5023006..5027413

Genome context

Sequence
000001 CATTTGCATT CACCAAAAGT GCACTCCTCC ATTTATTAAC TATTTTATTA GTAAATAAAG TACTGTATTT AAGTGCATAT 000080
000081 GTTAGTCAGA TGGGAACAAT AACTTTTTGG AGCTCAAAGC ATGTTCTCTT ATTCAGCATT ATGGCCTATT TGACTAAGAT 000160
000161 GTACCTTGAA TTAATTAATG CATGATTTCA GTAATAAAAA TTTTAAAAGT AATAAAAATT ACAAGTCTGT GGGGTGAAAG 000240
000241 GCCCAATAGA AATTATGGGG GGTGGGGGTG GGGGCACTCA GTCAATTTTC CTGCCTTTGC TCAGGGAAAT ACCAGGTTTT 000320
000321 TGTGCAGGTA TAGGCGGAGA GAGGACCAAT ATGCCCATCC CTTAAAGGGA AGCCATGTGA AAAACTCAAT AAGTCATCAA 000400
000401 AGTACATATA GCAACACCTA AGAACAAGTA TTCTTTCTAG CTGAAGACAA ACACAAGCAA CACAAACAAG CAAACAAACA 000480
000481 AACAAACAAA AAGGTGCAAT ACTGCATGTT TTTTGGTGCA TTCTTAGGAT GTAAATGAAA ATGTTTCTCT ATTATATGCA 000560
000561 TCCGAAGCAG AGCTGATTTT TTTTTCTTTG CAGTCATTCT TTGAAGTCTG TAGAGACTTC AGCCCTCCCC TTGAGGCTCC 000640
000641 CTGAAGAAAC TAAACCAATT GATTTAATAG TTGCTTAGTG CCTTTATCCT GTACCCACAG TGAACTGTAG AAAGTGCCTC 000720
000721 CTTAACACAG CTGAGAAGTT AGGTAGCAAA AGTGGGGAAG GGTTGGGGCA CAGACCTTTT GCTTTTTCTT TTTCCATTCT 000800
000801 CGCTCTCTCA TTTCACCACT GTGAGAAGAC CACACCACCC TAAACCCTGG AGAGGAGAGA CCCAGGAGGG TGCTGTCTCT 000880
000881 CTGGCCATCT ACTAGCATTG GTCCCTTTGA CAGCCTGACG CTGGATGTGA ACTGAGACCC ATCTTTGAAC TGGACATGAA 000960
000961 CTGTGAACTT GTTTTTTCCT CTCTCCACCA AAGCCAAGAT AAACTTTTTG GGAATTTGTT TCCTATCGAG GGCCACTTTG 001040
001041 GACACACAAG GCTTCCTCAG GTCCAGTGTA GTGCTCCTGG CACCTTTCCT TATTTTTTTC TCTGTCGGTA ACAGCACTTT 001120
001121 GCAAATCTCT CTGACGGTCC AGTCTTTTCA GGCATTGTTG TGGATGTGGG AACACTCAGT TCATAATAAC CTTTCCTAGG 001200
001201 CCTTCCCTCC TGGTCTACCC CTTTCAGATA TTTCCTGATT GCCCCTATGA TCTTCCCACC TGGCAGTCAC TTCACAGGTT 001280
001281 GAACATCTAA CTTCTGCTGC CCCCCCGTTA CCCAGCCCAG AGAATGGTGG GGACCCTGTT CCTGGCTGAA AGAGAGCCAC 001360
001361 GGAACACAGG CCTCTGGAGC TCGGCAGCTG CCCACCGGTG GAGAGGTACT CACAGCCTTT CAAAGGACCC TGAGGTGGGG 001440
001441 AATCTTCATT CTGCATTTAG CATGTAGCTG CCTGTTACCT GACATTCTGG CCCAGCTTCT TCTGAAAATC TGTCCTGCTT 001520
001521 CTCCCACCCC TTTCCCCCAT CCTGTCCTAG AACTAGCAGT GAGGCAATCA CCCTAGAAAC TCGAGTTACA CCCATTCTGG 001600
001601 CTAACTCGAT TAAAAGAAAG AACATGGATA TCTTATTTTC CTATGTGACT TTTGTAAATC TGTGAGATGA ACACAACACA 001680
001681 CATCGTGGAA GATGAGGGGC CAAGAACTGC GCAGCATCCG ACTACAGGGC ATTAAACCCT CCCATGTGAT GTCTCCTTCT 001760
001761 CGTCTGAACC TTAACTCATT CTGGCGATTC CTTTCCTACT TGCTTAAAAA TCCCCAATTA GGAAAAAAAT GCCAACCTCC 001840
001841 TCCCAGGCTT GGGGTTATCT TGATCTTTCA TTTCAACGTT GAGGTCTAGT GCACACAGAA CTTGAAACAC CGCACTCTGT 001920
001921 CAACAGCAAT AATCCACTCA GTACTGTGGG ATGGATGGGT TAATGGATGA GAAAACGGCA CCAAGACTGA CTTTGGGTAT 002000
002001 TTGGTATATT TACCGTGGTT ACACTCTGGA CTGGTTGATT CTTCTGCATG TGATATAGAA AAAAGTGCTG CATGCGGTGA 002080
002081 ACCTGTCAGT CTGGGACTGG GGGTGAGTTG TTGTTATGAG TTTGGGGTGG TGTGAGGAAA GTGAATGCTG CTTAGCTCAT 002160
002161 CTGTAGCTCA TTGCAATGAA TTCAGTAAGA ATGGAGTACA GGGATTATCT GTGTAGCATA GGCATGCAAT GTTTGACCAA 002240
002241 GCTCTTACCC TCGCACTGTA ATGTGTTGAA ATGTCTTTGT AGACCTGAAG GTGCACTTAA CAAAACTGCC TATTAAGGGA 002320
002321 TGACTATTTT TTGGTTTACT TATTCATATT TATTTTAGCA GCCTTTTTAC CTTTTCTTCC CCTTCCTAGG CATGGAGCTG 002400
002401 TAACAGCTCA TGTCCTGACT ATGTGTTTTC TCCAGAAGGA GAAGACTTCT GATGTGCTGA TAGCTATAAT TCCTCTCTTC 002480
002481 CAGTCTATTG GGGCCCTAGT TCAATAGGGT GGCAATAGAA GAGTTGGTCA CACCAGGGCT GTTAGCCATC CCAGAATCTC 002560
002561 TGAAGTGGTT AACTCACCTG AAGTGATCTG AATCAGAGAG ACCAAAGACA TTCATTTCCT CTGTCCTCAG ATTTCTAGAA 002640
002641 GACAAATTCT AGCCAGGAAA ACTTTCTGTT TTTGCATCTC CCCTTTCCCA TTTGTGCCCA ACTCCCCTTG CACTCCCTGG 002720
002721 AGACTTGAGT TCTGATTTTC AGTTATATCA GCTCATTGGG AGTGTGTTCG TGGGTGAGCC TTGCAGAATC AGATAAACCA 002800
002801 ATAGCAAGTC CTTCTCCAGG ATTCTGGCCA GTGGGCAGTC ATTTCCCTGA AATGAATTGT AGGGCAGGTT TAGATTCCAC 002880
002881 TATGGTGGAC GTGAAGCACA GGTGGTGTCA CAATCTTGAT TTGCTTGAGA GTTAAAAAAA TACATGTAAA TGGTAAATGA 002960
002961 GGAATACATT TTTTTAAAGT AGAAATTTGG TTTAGCCTAT AAAAGGCCTT CTTCACATTG TGTATAGTTA CACGTTTTTC 003040
003041 AAATTAGGTA CCATCTAAAA GTCAATAAAA ATAGTTTCCT AGCCCTCTCA TTTAATATAG GAGACCTCAA AACACATGCT 003120
003121 TTTTAACAAT TTTACATTTT AATTCTTAGT TTGGTAGATT GGATTGAAAG AAAGGAGAAA GAACATTAGC AGAAGGCACT 003200
003201 TTCCCATTTT CTTCCAGGAA TGACTTATTC CTGGGGTGGT GAGAATTGGT GGGTGGTAAC CATCCATAGT ATAAAATTGT 003280
003281 TAGAAAGAAT ATAAACTGCC AAACAAGCAT GTTATCTTCA GGCTTTTCCA AGCAAGAATG AAGTCTTTTG ATGTTTATGT 003360
003361 TCATATTAAG AAGACAAACA AACTAAAATT TTAAGACCAG ACACAACCCA AGTTGAATTG TGATCTCAGG AGGTGAACTC 003440
003441 TCATTCACCA TGTGGCATAT TACTACCTGT ATTTATATCA TGGAATTTCA GGGTATATGT GAACATGTCT AGTATGACTC 003520
003521 AGGTAAACCT TTAAAGAATG TATGTTACTT ACCATTTTTG TAAAGAAGCA AACAGGAGCT GAATTGTTAA CCAAAACTGT 003600
003601 TCCATTACCT TGGGTCACTG TGCAAACTAA TTCAGGGTAC AGATATAAAG TTTAGAAGCC TTGGGATTAA ATGCCAGCCT 003680
003681 CTTTGCTCAG GCAAAATGAC CCTGGGCTTT CTTGGGAAGT CCAGCATGTA TGTAAGGGGT GAGGCCCTGC TGACCTCAGG 003760
003761 GCTTTTCGCT TTAAGGAGAT TAACCCTAGT CACAGTGATT TTCATTTAGG AGCTAACTAG GAGTTTACTC TTTATGACGT 003840
003841 GAAACTTCAA AGAGTATAGA AAACTTTTGT ACCACAATCA AAGAAGAAGA AATGGTGTAT GGAAAGAAAA CAAGACAAAA 003920
003921 CAAGAAATCT CTTGTAAAAT ATTCCAGGTT AAAGTTGTCT CCTCTCCAAA CCTTGCAGAA GCACCTTTCT TCTCTTCAGC 004000
004001 GCACTGTTTT GGGACTGTTT ATGCAGCAGA TGTAAGTAGA CAACATGGAC TCCATGTGAC ATGCCTCTAA TAGTAAAGAT 004080
004081 AAAGTATTAC TGAGGTTAAA AATAAAAATT GAGTAGTATT AATTTAAAGT GCACCATCAG GACAACAAAC CATTTAAGCT 004160
004161 GAAAAAACGC TATTTTATTT CTTGAGTTTG CCAGTTGCTT CCACCTTGAG TTAAGGACGT GTCTCATCTT CACCTACTGC 004240
004241 GCATTCTCCC TTCTCTAACT GTGTAATATG TCAGGTCAAG GACATTGAAT GTTATGAATT GAGAACCTAA TTGATGCGCA 004320
004321 TAGTTTTCAT CTATGCAATT TTACTTGCTT CTGTCACTTT ACGATCTGTT CATATTTGGC ATCAATTAAA GATACTTTTT 004400
004401 AAGGATCTT
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Predicted Small Protein

Name NONHSAT025981_smProtein_1691:1888
Length 66
Molecular weight 7586.9563
Aromaticity 0.0923076923077
Instability index 51.5630769231
Isoelectric point 11.3965454102
Runs 7
Runs residual 0.0425961538462
Runs probability 0.047000782295
Amino acid sequence MRGQELRSIRLQGIKPSHVMSPSRLNLNSFWRFLSYLLKNPQLGKKCQPPPRLGVILIFH
FNVEV
Secondary structure LLLLLHHHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEEEE
EEEEL
PRMN -
PiMo -