NONHSAT025981
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025981 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4409 nt |
Genomic location |
chr12+:5023006..5027413 |
Exon number |
1 |
Exons |
5023006..5027413 |
Genome context |
|
Sequence |
000001 CATTTGCATT CACCAAAAGT GCACTCCTCC ATTTATTAAC TATTTTATTA GTAAATAAAG TACTGTATTT AAGTGCATAT 000080
000081 GTTAGTCAGA TGGGAACAAT AACTTTTTGG AGCTCAAAGC ATGTTCTCTT ATTCAGCATT ATGGCCTATT TGACTAAGAT 000160 000161 GTACCTTGAA TTAATTAATG CATGATTTCA GTAATAAAAA TTTTAAAAGT AATAAAAATT ACAAGTCTGT GGGGTGAAAG 000240 000241 GCCCAATAGA AATTATGGGG GGTGGGGGTG GGGGCACTCA GTCAATTTTC CTGCCTTTGC TCAGGGAAAT ACCAGGTTTT 000320 000321 TGTGCAGGTA TAGGCGGAGA GAGGACCAAT ATGCCCATCC CTTAAAGGGA AGCCATGTGA AAAACTCAAT AAGTCATCAA 000400 000401 AGTACATATA GCAACACCTA AGAACAAGTA TTCTTTCTAG CTGAAGACAA ACACAAGCAA CACAAACAAG CAAACAAACA 000480 000481 AACAAACAAA AAGGTGCAAT ACTGCATGTT TTTTGGTGCA TTCTTAGGAT GTAAATGAAA ATGTTTCTCT ATTATATGCA 000560 000561 TCCGAAGCAG AGCTGATTTT TTTTTCTTTG CAGTCATTCT TTGAAGTCTG TAGAGACTTC AGCCCTCCCC TTGAGGCTCC 000640 000641 CTGAAGAAAC TAAACCAATT GATTTAATAG TTGCTTAGTG CCTTTATCCT GTACCCACAG TGAACTGTAG AAAGTGCCTC 000720 000721 CTTAACACAG CTGAGAAGTT AGGTAGCAAA AGTGGGGAAG GGTTGGGGCA CAGACCTTTT GCTTTTTCTT TTTCCATTCT 000800 000801 CGCTCTCTCA TTTCACCACT GTGAGAAGAC CACACCACCC TAAACCCTGG AGAGGAGAGA CCCAGGAGGG TGCTGTCTCT 000880 000881 CTGGCCATCT ACTAGCATTG GTCCCTTTGA CAGCCTGACG CTGGATGTGA ACTGAGACCC ATCTTTGAAC TGGACATGAA 000960 000961 CTGTGAACTT GTTTTTTCCT CTCTCCACCA AAGCCAAGAT AAACTTTTTG GGAATTTGTT TCCTATCGAG GGCCACTTTG 001040 001041 GACACACAAG GCTTCCTCAG GTCCAGTGTA GTGCTCCTGG CACCTTTCCT TATTTTTTTC TCTGTCGGTA ACAGCACTTT 001120 001121 GCAAATCTCT CTGACGGTCC AGTCTTTTCA GGCATTGTTG TGGATGTGGG AACACTCAGT TCATAATAAC CTTTCCTAGG 001200 001201 CCTTCCCTCC TGGTCTACCC CTTTCAGATA TTTCCTGATT GCCCCTATGA TCTTCCCACC TGGCAGTCAC TTCACAGGTT 001280 001281 GAACATCTAA CTTCTGCTGC CCCCCCGTTA CCCAGCCCAG AGAATGGTGG GGACCCTGTT CCTGGCTGAA AGAGAGCCAC 001360 001361 GGAACACAGG CCTCTGGAGC TCGGCAGCTG CCCACCGGTG GAGAGGTACT CACAGCCTTT CAAAGGACCC TGAGGTGGGG 001440 001441 AATCTTCATT CTGCATTTAG CATGTAGCTG CCTGTTACCT GACATTCTGG CCCAGCTTCT TCTGAAAATC TGTCCTGCTT 001520 001521 CTCCCACCCC TTTCCCCCAT CCTGTCCTAG AACTAGCAGT GAGGCAATCA CCCTAGAAAC TCGAGTTACA CCCATTCTGG 001600 001601 CTAACTCGAT TAAAAGAAAG AACATGGATA TCTTATTTTC CTATGTGACT TTTGTAAATC TGTGAGATGA ACACAACACA 001680 001681 CATCGTGGAA GATGAGGGGC CAAGAACTGC GCAGCATCCG ACTACAGGGC ATTAAACCCT CCCATGTGAT GTCTCCTTCT 001760 001761 CGTCTGAACC TTAACTCATT CTGGCGATTC CTTTCCTACT TGCTTAAAAA TCCCCAATTA GGAAAAAAAT GCCAACCTCC 001840 001841 TCCCAGGCTT GGGGTTATCT TGATCTTTCA TTTCAACGTT GAGGTCTAGT GCACACAGAA CTTGAAACAC CGCACTCTGT 001920 001921 CAACAGCAAT AATCCACTCA GTACTGTGGG ATGGATGGGT TAATGGATGA GAAAACGGCA CCAAGACTGA CTTTGGGTAT 002000 002001 TTGGTATATT TACCGTGGTT ACACTCTGGA CTGGTTGATT CTTCTGCATG TGATATAGAA AAAAGTGCTG CATGCGGTGA 002080 002081 ACCTGTCAGT CTGGGACTGG GGGTGAGTTG TTGTTATGAG TTTGGGGTGG TGTGAGGAAA GTGAATGCTG CTTAGCTCAT 002160 002161 CTGTAGCTCA TTGCAATGAA TTCAGTAAGA ATGGAGTACA GGGATTATCT GTGTAGCATA GGCATGCAAT GTTTGACCAA 002240 002241 GCTCTTACCC TCGCACTGTA ATGTGTTGAA ATGTCTTTGT AGACCTGAAG GTGCACTTAA CAAAACTGCC TATTAAGGGA 002320 002321 TGACTATTTT TTGGTTTACT TATTCATATT TATTTTAGCA GCCTTTTTAC CTTTTCTTCC CCTTCCTAGG CATGGAGCTG 002400 002401 TAACAGCTCA TGTCCTGACT ATGTGTTTTC TCCAGAAGGA GAAGACTTCT GATGTGCTGA TAGCTATAAT TCCTCTCTTC 002480 002481 CAGTCTATTG GGGCCCTAGT TCAATAGGGT GGCAATAGAA GAGTTGGTCA CACCAGGGCT GTTAGCCATC CCAGAATCTC 002560 002561 TGAAGTGGTT AACTCACCTG AAGTGATCTG AATCAGAGAG ACCAAAGACA TTCATTTCCT CTGTCCTCAG ATTTCTAGAA 002640 002641 GACAAATTCT AGCCAGGAAA ACTTTCTGTT TTTGCATCTC CCCTTTCCCA TTTGTGCCCA ACTCCCCTTG CACTCCCTGG 002720 002721 AGACTTGAGT TCTGATTTTC AGTTATATCA GCTCATTGGG AGTGTGTTCG TGGGTGAGCC TTGCAGAATC AGATAAACCA 002800 002801 ATAGCAAGTC CTTCTCCAGG ATTCTGGCCA GTGGGCAGTC ATTTCCCTGA AATGAATTGT AGGGCAGGTT TAGATTCCAC 002880 002881 TATGGTGGAC GTGAAGCACA GGTGGTGTCA CAATCTTGAT TTGCTTGAGA GTTAAAAAAA TACATGTAAA TGGTAAATGA 002960 002961 GGAATACATT TTTTTAAAGT AGAAATTTGG TTTAGCCTAT AAAAGGCCTT CTTCACATTG TGTATAGTTA CACGTTTTTC 003040 003041 AAATTAGGTA CCATCTAAAA GTCAATAAAA ATAGTTTCCT AGCCCTCTCA TTTAATATAG GAGACCTCAA AACACATGCT 003120 003121 TTTTAACAAT TTTACATTTT AATTCTTAGT TTGGTAGATT GGATTGAAAG AAAGGAGAAA GAACATTAGC AGAAGGCACT 003200 003201 TTCCCATTTT CTTCCAGGAA TGACTTATTC CTGGGGTGGT GAGAATTGGT GGGTGGTAAC CATCCATAGT ATAAAATTGT 003280 003281 TAGAAAGAAT ATAAACTGCC AAACAAGCAT GTTATCTTCA GGCTTTTCCA AGCAAGAATG AAGTCTTTTG ATGTTTATGT 003360 003361 TCATATTAAG AAGACAAACA AACTAAAATT TTAAGACCAG ACACAACCCA AGTTGAATTG TGATCTCAGG AGGTGAACTC 003440 003441 TCATTCACCA TGTGGCATAT TACTACCTGT ATTTATATCA TGGAATTTCA GGGTATATGT GAACATGTCT AGTATGACTC 003520 003521 AGGTAAACCT TTAAAGAATG TATGTTACTT ACCATTTTTG TAAAGAAGCA AACAGGAGCT GAATTGTTAA CCAAAACTGT 003600 003601 TCCATTACCT TGGGTCACTG TGCAAACTAA TTCAGGGTAC AGATATAAAG TTTAGAAGCC TTGGGATTAA ATGCCAGCCT 003680 003681 CTTTGCTCAG GCAAAATGAC CCTGGGCTTT CTTGGGAAGT CCAGCATGTA TGTAAGGGGT GAGGCCCTGC TGACCTCAGG 003760 003761 GCTTTTCGCT TTAAGGAGAT TAACCCTAGT CACAGTGATT TTCATTTAGG AGCTAACTAG GAGTTTACTC TTTATGACGT 003840 003841 GAAACTTCAA AGAGTATAGA AAACTTTTGT ACCACAATCA AAGAAGAAGA AATGGTGTAT GGAAAGAAAA CAAGACAAAA 003920 003921 CAAGAAATCT CTTGTAAAAT ATTCCAGGTT AAAGTTGTCT CCTCTCCAAA CCTTGCAGAA GCACCTTTCT TCTCTTCAGC 004000 004001 GCACTGTTTT GGGACTGTTT ATGCAGCAGA TGTAAGTAGA CAACATGGAC TCCATGTGAC ATGCCTCTAA TAGTAAAGAT 004080 004081 AAAGTATTAC TGAGGTTAAA AATAAAAATT GAGTAGTATT AATTTAAAGT GCACCATCAG GACAACAAAC CATTTAAGCT 004160 004161 GAAAAAACGC TATTTTATTT CTTGAGTTTG CCAGTTGCTT CCACCTTGAG TTAAGGACGT GTCTCATCTT CACCTACTGC 004240 004241 GCATTCTCCC TTCTCTAACT GTGTAATATG TCAGGTCAAG GACATTGAAT GTTATGAATT GAGAACCTAA TTGATGCGCA 004320 004321 TAGTTTTCAT CTATGCAATT TTACTTGCTT CTGTCACTTT ACGATCTGTT CATATTTGGC ATCAATTAAA GATACTTTTT 004400 004401 AAGGATCTT |
Predicted Small Protein
Name | NONHSAT025981_smProtein_1691:1888 |
Length | 66 |
Molecular weight | 7586.9563 |
Aromaticity | 0.0923076923077 |
Instability index | 51.5630769231 |
Isoelectric point | 11.3965454102 |
Runs | 7 |
Runs residual | 0.0425961538462 |
Runs probability | 0.047000782295 |
Amino acid sequence | MRGQELRSIRLQGIKPSHVMSPSRLNLNSFWRFLSYLLKNPQLGKKCQPPPRLGVILIFH FNVEV |
Secondary structure | LLLLLHHHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEEEEE EEEEL |
PRMN | - |
PiMo | - |