NONHSAT025919

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT025919

Source

NONCODE4.0

Same with

,

Classification

sense

Length

7554 nt

Genomic location

chr12-:3835078..3873985

Exon number

2

Exons

3835078..3842376,3873731..3873985

Genome context

Sequence
000001 agactagcta agtcttctgg cctccatctt tctcccgtgc tggatgcttc ctgccctgga acagcggact ctaaattcct 000080
000081 cagcttttgg actcttggac ctccaccagt ggtttgccag gggttcttgg gcctttggcc acaaactgaa gactgccctg 000160
000161 tcgcgttctc tatttttgag gttttgggat tcagactggc ttccttgctc cctagcttcc agacggtcta ttgtgggact 000240
000241 tcatcttctg atcttGTCAT GCCCTGACCA CAGCTGCCCT TCAGGAGGCT GGCACGGAGC CACCTGGGGC CATTGGGCTG 000320
000321 TTTGTCAAGG GTGGGGCAGC AGCAACTTGC CACTCTTCCT CCATGAGCCC AGCCAGAGCC TCCACTGGGC ACTTAGCACA 000400
000401 AGAAAAACCC TGCAGGAGCC GGATCCAGAG CGCTGGGATT CAGCAGGAGT GCCAGGAGAA TTCAACACAG GTGTGCTGCC 000480
000481 TCCTCTCCTG CCAGGTGTGT GGCTGCACAG GAGTCTTGCT GATGGTAAGA ATCGGAGTTC CTGGATTCAG GGGGTACTGG 000560
000561 GAGCAGCCGC CTGTGAGAAG GCTGGGCCAA ACAAACAAAT GTTCTGAATG AGGATAAGAA AACAGCATTT CTCCTGAGGG 000640
000641 TCTCTGATTT TCTGTAGCCT GCCCCTGGCT TGAAAACTGT CAGCTTAGCA AAGTGGACTC TCAAACCACC TGGATCTCAT 000720
000721 GTTTTTTGCT TGTCAGATTC ATTGATTGCT GCAGAATAGG CTCAACATCC CACAGGGTCT GCTTCTCTGA CTGGGACAAA 000800
000801 AGCGCTCATA AGAAACTGAT GGGAGCGGCT TCACCAGGGG TGGCAGACAA TTCTGGCCAG GAGTGGGTGT CCGCAGTGGG 000880
000881 CAAGAAGTGT GGGCTCCATG CCAGGAGCAG TGGCGACAGC TTCTAGAAAT TGTCTAGTAG CCTGACATCC TAAAGAATGT 000960
000961 CCTGGAGAGC TGGAAAAGCG GTTCTTCCAG ACACATGCAG GGAGCAGCGA AATGAGATGC AGTAGAAGGT TGAATCCAGC 001040
001041 TGGGAGCACA GTGCAATTTA GTTAAGAGTG ACTTCTGTGG CATCTGCTGG TCGTGGGTGA GGGCTGGGGG AAGATAATAC 001120
001121 TAATTTGGCC ATTATTACac atgtctttct tgaatcttca atcagattgt caactccttg agggtagtaa tggaatattt 001200
001201 tatgtctttt gcattcttca caaggtcggg tactcagcca ttgtttattg gttgaCTATT TGATGCATTC CGACACAATA 001280
001281 CACTTGACCG GGCCAGGTCC TGGGATCTTC ATTCATAGGA GCAGTGTTGT CACCAGTATC TGTTGGGCAC CTGCTGAGAA 001360
001361 GGAGCAATGG CGGGTACTTT TGCCACCCGA GTTGGCCTGA GGTTGCTGAG tgtatgagtt tcctagggct gccttaacaa 001440
001441 agtgccacca actgggtgat taacagaaat gtcaggtctc ccagttctag aggcgagagg tctgcaacca aggtatcagc 001520
001521 agggcctgac ccctctgtgg tgtataggag gcccctcctt gcctcgccct ggcttctgac gatttgccgg ccgactgtgg 001600
001601 tcttccttgg cttgcagctg cgtcactcca atccctgcct ttatcatcac atggcattct ccctgtgtgt gtgtgtttcc 001680
001681 aaattttccc atttttataa ggacaccagc catattagga accgccctac tccagtatga cctcatctta actcattaca 001760
001761 tcttcagcaa ccccgtttcc aaagaaggtc acattctgag gtactagggg ttaggacttc aatgtggaga tcacagttca 001840
001841 aGCTGCCACA CTAAGTGAGC TCATTCACAG TGACAAGACT AGGGACATAC AAAGGGCCGG GGTGAATATG AATGGTGTTC 001920
001921 CATGGTGCTG CCTGAAAGTG ACTGGCAGCA GTGTCAGCAG GGGAGCATGT CCTCTGTTCT CAGCATTCAC TAGAGAGGTG 002000
002001 TGCTGAGCTG GGGCCCAGCT GGACACATTG GATGCTGTGC TCCAGAGGAG GAACTGCACT CACCTATCGC TCTCCTTTGT 002080
002081 ATGGGACAAG TGGGACAGAG CCTTGATGGG GGGAACACAC CACTGGGGTT CCAGGCAGCC TTAACTATCG AGGAATGGCA 002160
002161 GGAAATTCTG TCTGCCCAGC ACCTGGTGAC CCTGGAGCTC CTCAGTTTCC CGGGAAGTTG AGTTTTGGAG CAGTCTCTTC 002240
002241 CAGAGAGGCT GGGAGTGCAT CACTTTCCCC CTGGAGGTGG CGGAGGCTGC TGGGCCCAAC TAGCTCATTG CCAGGCAATC 002320
002321 CAGAGAGAGT TCCAGACACC AGATACTGAA CAACCTACTT GTCTCCACAC CTAGTAAAGC TTGGATCCAA TGCTGCCAAC 002400
002401 TTTTCTGCCT CTCCAGTTTT GGAGCCCTTA ATGTGAAGGT GCAACCCAGA AGCCTGCAGG CTGTTCGTAG CCTGTAGATG 002480
002481 TGTTTTCTTC CCAGTAGCTG GTGTATACAG TGTTTTTGTA ttatttttca aataagcaat acatttgtgt ggttcaaaaa 002560
002561 ttaaagcgct atagaaaggt attcggcgaa atcttatccc tgcctccatt ggccagtcct gccctgcccc tcccttgtaa 002640
002641 ccacttttat tagtttccta tacaaccttc caggatttct ttttgcagat aaaagtcagt acaaatatat atctgcctca 002720
002721 tccctctact tcttacataa ttataacaga ctctacacac tatttttaac cttgcctttt tcactcgatt tatcttggtg 002800
002801 atctttccct ctcagtatgt ggagagcttc ctcattcttt ttttacaggg gcatagtatc ccattgtatg gatttaccat 002880
002881 aatttagcaa tcccctactg atgaacacag gttgttttta gtcatttgct gttaatatta caagaaacac tgcacggaat 002960
002961 aaacctgCCA TTTCATGTTG ACCCTGAACG TGTGTAACAT TTAAAAATTC TGAAAAATCT ttgaataatc aacagaactg 003040
003041 gaaacactca gttctagtat gtggacaact ggttgggttg ggtagcagct gtccttttaa agagacctcc ctgccccgct 003120
003121 ctggcatctt ccccaccacc tcttgctgac cctcttgcgt tcagcctgag cgttgactgc catctagcaa cattgtgctg 003200
003201 tttctctcat agagtattaa ggaggaaggg aaatcactca tgtactcatg tctcttcaag ggggaaactg aaaaccaagg 003280
003281 aggctgtctt tttccagcag agggaggagg gcagacttaa tatgaaagcg aTTCTTCTTC ATCGGCCCCT GCCCACTCGG 003360
003361 CCCATTTCTG TTAATCTTCT GTATGCTTGA GATTGCAGCC CCTGCCTTGC CATGTCCAGG CTTTCATCTC GGGAGCTGAA 003440
003441 AAGTGGAAGG GAAAGAACTC TGCTCTCTTC TTGCTTTTGT GCACTATCTG AGTAATTGCA TGGAGACCAG CAATAAAAAT 003520
003521 GAAATACAAG ACAGTCAGAA GTGTTGCTCC ATTACATGGa ttctctcagc agacccccca aggcagtggt agcactagct 003600
003601 cacttttcca gacaaggaaa cagtagcaga gtgaagtggc ttcaccaaga ctcataactc gcacacagaa gaactaggat 003680
003681 cagaacccag gtttttctgt cactagaacc tgacatttta gccaatctat catgctgctc cCAAAGTCtt tttgtttttt 003760
003761 cttgagacag agtctcgctc tgtcacccag gctggaatgc agtgatgcaa tcttggctca ctgcaacctc tgcctcccgg 003840
003841 gttcaggtga ttcttctgcc tcagcctccc aagtagctgc gactacaggt gcacaccacc acatccagct aacttttgta 003920
003921 tttttagtac agatggggtt tcactatatt ggccaggatg gtcttgatct cttgacctca tgacctgcct gcctcgtcct 004000
004001 cccaaagtgc tggaattaca tgcatgagcc agcttacccg gccCCAAAGT CTTTTTAAAT AAGGAGTGGT TTACAGTTAA 004080
004081 GCCTCTCACC TTCTAAGTCT GTCATTACTG ATGCTGTGGA GATGATAGTC GTGACAAAGA TAAGAGCAGC TCTGAAAATG 004160
004161 GGCCAGATGG CTACATACTG CAAAAAAGGT GGGTGACAAT GCGTCTGTGG TCTCATAACT AACGTGACGG CTGTTCCTTG 004240
004241 ACAGCTTTTC CCATTTCATA GAGTGGAATT GGCTCCCCTG CCCTTTTGCt ctttcaatcc aagaacatgt attgagcacc 004320
004321 ttctgaatgc caggcactgc gctcggtgtg agtgacaagc ctggtgCCTG GAGGCTAGTT CAGGCAGGTC AACAGAAAGC 004400
004401 TGCAGTGCCA CCAGCTACAT GTGGTATTGG TGACATGGAT GCGTTGGGTT GTGTCCAGAA TGTGACAAAA GAGACAAATA 004480
004481 CGCCATGGAG CAACCATGGA CAACAAGGCG AGTGGCTTCC AGCTGTCTTG GGTCCTCGTC ATTTTACACT ACTTGATGAA 004560
004561 GGAAGGAAGT GGGACCCAGA AGTGGTGGCT ATGAGCTAAG GTATTGAGCC ATCCTTCTGC CCGCAGCCCA GGATGAACAT 004640
004641 GACCACAACT GGCAGCTCTC TGGAGGCCAC TCGGGGTTGA AAGGTGGGCC AAAGGAACCC TCCCTCCCTT TGCTGCTCCA 004720
004721 CCTCAGCTTT TCTCATTCCT GGCCATTTGT TTATCCTGTA AGCTGGGGGC TGGGGGTCTC CCAAAGTATC ACTCATCCTG 004800
004801 AGAGTTAGCA TTCTTCCAGC GGGGCAAAAT CCTCTTCCCT ACTGAAGAAA TTCTAAACCC AGCCAGCTGA AAGAGGAAGA 004880
004881 GTGCAGGGGT GAGGGGAGGA TGGGACCAAG AGGGCACATT CCACTTGATC TCTGAAGTCA CACCTCAGCA ACGGGACTTG 004960
004961 CCCGCCAAGG CTTCTCGTCA CCATGCTTTG TTGGATTTGT AATGTGCTGT TTATCTCTCT TCTCCCGCAA GTTTGCATGC 005040
005041 AACAGCATCT GTCATCTCTG TGGTTATCTT AGAACAACTG GGGCTTTTGC TTTTTATTTA TTCTTTCTCT GAGTGCAGTG 005120
005121 CTAACCACAG CAGCCTACGG GCAGAGGGGT TGGGGAGGGA GTCAGTTGCT TTTCATTGAA GTGCTATGGT CTTCAGCTGC 005200
005201 AGCTGGTGTG AGTGCTGAAA CTGTGTGAAA CAAAAGTGTT GAAACTCAGT CCCAAGTGAC TTCTGGGGAT CCGTTGCCTG 005280
005281 TGTTTCCTAT GGATGAGTAA TTAGAAACGA GTGGTTTTCA GGTTGAAAAG GAGACTCCAG AGTCCTGATG GAATACAGAC 005360
005361 AGCAGGCACG TCTAGGGCCa cagacaggta tgtgtgctgc tctgtgctgg cagctgtgtg cagatacaaa agaagtatcc 005440
005441 cataccctcc ttgccctcaa ggaacttaGT GACAGGAAGG AGAGCAAAAT TTACAGTTGG CCTACcctct tgggcctgtt 005520
005521 tcctcattac agaaatgaat gaggttacac ttgatCAGTA TTCCTTAttt tattttattt tttttttaga ttcaggaggt 005600
005601 acacctgcaa gtctgttaca tggagatatt gcataatgcc gaggtttggg gttctaatta acccatcacc caaataacga 005680
005681 acatagtatg caataggtag tttttcagcc cttgTTTGGC GAGTGTTTCT AATGGGGTCA GGCTGTCCCC TAGAGTAATG 005760
005761 CCTCTCACAC TTTCAAAGAA GTTAAGCCAA AAGCCCGGTA TTTAGGAAAT GGTTGTTTTA GGAAGAGAAG CCTAAATGGA 005840
005841 ATAAAGACAA AACCTCGAAA TGACGAGATG ATCTCCCTGC TTCATGCATT CTGTCTAGAT CAGAGCATTT CCAAATATAC 005920
005921 ACTGAACTGA AAAGGGCACA GTACAATATG CAGTGACCGC AAAGCAAGGA ACCCATGCGC AGGTCTGTAA CAGGAAATCT 006000
006001 GAGACTTCAT CCAGCCGATG TAGAATTAGA TACTAGTTTA AATTAGCAGA GGCGCCTCAA ACTTGTTTAT AAAAGCTGTT 006080
006081 TTAAAAATAA TATTCTTATC ACATATATTT ATATTTGTAG TACAATGATA AGAAATCTCT TGCAAAAATT AGCTATCATG 006160
006161 GTTACTTCTT TGGGGTTGCC TTTTGTTCTT CCTTCTTACT CTGATATTCT CCTTCAAGAT TTACCCAACA ACTTTTCCCA 006240
006241 ATCCATCCTC TTCTTCTCAC CGCCCATACT ATAAGGATGT CATTTTAAAA GCtttttttt tttttttttt ttgagacaga 006320
006321 gtctcactct gttgccaggc tggagtgcag tggtgcgatc tcaggtcact gcaacctctg cctcccgggt tcaaggaatt 006400
006401 ctcccacctt agcctcccga gtagctggga ctacagggtg tgccaccacg cccggctaat ttttgtattt ttagtagaga 006480
006481 cggggtttca ccatgttggc caggatggtc tcaatctctt gaccttgtga tccacccgca ttggcctccc aaagtgctgg 006560
006561 gattgcaagt gtgagccacc acgcccagcc ACtttttttt ttctttcttt cttttctttc tttttttttt ctttACTGCT 006640
006641 AAAGACCGAA TATATGCCTC AACACAGTGG GTGGGATTTC CAGACTGGAA ACATGTTTTC TGTGACACTT TGTCACTATC 006720
006721 CTGCCCCATA TCACAGCGTA ATAAATTATC ATGACGCTAC ACTTATACGT AAGACTGAGC TCACGAGACA GGATCCTGTG 006800
006801 CTTCCTTGTT TCCTCTGCTT GCACATTTGT AATTTGATTT GGCTTGTTAT CTGTACCTCA GTGAAGGTTA TTTCCTTCTT 006880
006881 CCTGTTATCA TATACGGCCA GGAAAGGGGG GTAACTCATT GTAACACTTC TTTATTCTAT TGTCCTCCTA TATCCCTCTG 006960
006961 ATCTTTTATT TCCTTGTACT TCTTATATGA AGTGGCTTCT ATTTGTCTTC TGTTAAATCT AAACTTAACC ATTATAGGta 007040
007041 ggtggaagtg ttgactactt cattatgtgt tccagtgcag gcatgcatga gcacgtacat attgacagac atattatttt 007120
007121 attaagaatc acatttctgt gctcactttg gcagcacgta tactaaaatt ggaatgatac aaagaagatt agcatggctc 007200
007201 ctgcacaaga tgacatgcca aGTGTGTGCT CGCTCTCTCT CTCTCTGTGT ATATACGTAt atatataaaa tatacatata 007280
007281 gtatgtattt atatatatta atcacatttc ctttttatcc ttttattaaa attagggcta ctttatgcgt ttgggtcgac 007360
007361 cgacttttct aggaattgta tttcaggtgg taaagatggt gtttctaaat atttgttaca aaaatagggc attgattgga 007440
007441 tagggtggag caccactgGG TTAAATGATC TCCAAGGTCT CTGACATTCT TTGTGCAACA TTTACAAAAC AATGGATGAC 007520
007521 AGCCTGATTC ATGACTCAGT CAGAAAAAAA AAAA
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Predicted Small Protein

Name NONHSAT025919_smProtein_6653:6913
Length 87
Molecular weight 9859.4591
Aromaticity 0.127906976744
Instability index 53.5465116279
Isoelectric point 8.34808349609
Runs 15
Runs residual 0.034796945505
Runs probability 0.0521992580816
Amino acid sequence MPQHSGWDFQTGNMFSVTLCHYPAPYHSVINYHDATLIRKTELTRQDPVLPCFLCLHICN
LIWLVICTSVKVISFFLLSYTARKGG
Secondary structure LLLLLLLLLLLLLEEEEEEEELLLLLEEEEELLLLEEEELEEELLLLLLLLHHHHHHHHL
LEEEEEEELLEEEEEEEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHH
HHHHHHHHHHHHHHHHLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTT
TTTTTTTTTTTTTTTTiiiiiiiiii