NONHSAT025919
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025919 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
7554 nt |
Genomic location |
chr12-:3835078..3873985 |
Exon number |
2 |
Exons |
3835078..3842376,3873731..3873985 |
Genome context |
|
Sequence |
000001 agactagcta agtcttctgg cctccatctt tctcccgtgc tggatgcttc ctgccctgga acagcggact ctaaattcct 000080
000081 cagcttttgg actcttggac ctccaccagt ggtttgccag gggttcttgg gcctttggcc acaaactgaa gactgccctg 000160 000161 tcgcgttctc tatttttgag gttttgggat tcagactggc ttccttgctc cctagcttcc agacggtcta ttgtgggact 000240 000241 tcatcttctg atcttGTCAT GCCCTGACCA CAGCTGCCCT TCAGGAGGCT GGCACGGAGC CACCTGGGGC CATTGGGCTG 000320 000321 TTTGTCAAGG GTGGGGCAGC AGCAACTTGC CACTCTTCCT CCATGAGCCC AGCCAGAGCC TCCACTGGGC ACTTAGCACA 000400 000401 AGAAAAACCC TGCAGGAGCC GGATCCAGAG CGCTGGGATT CAGCAGGAGT GCCAGGAGAA TTCAACACAG GTGTGCTGCC 000480 000481 TCCTCTCCTG CCAGGTGTGT GGCTGCACAG GAGTCTTGCT GATGGTAAGA ATCGGAGTTC CTGGATTCAG GGGGTACTGG 000560 000561 GAGCAGCCGC CTGTGAGAAG GCTGGGCCAA ACAAACAAAT GTTCTGAATG AGGATAAGAA AACAGCATTT CTCCTGAGGG 000640 000641 TCTCTGATTT TCTGTAGCCT GCCCCTGGCT TGAAAACTGT CAGCTTAGCA AAGTGGACTC TCAAACCACC TGGATCTCAT 000720 000721 GTTTTTTGCT TGTCAGATTC ATTGATTGCT GCAGAATAGG CTCAACATCC CACAGGGTCT GCTTCTCTGA CTGGGACAAA 000800 000801 AGCGCTCATA AGAAACTGAT GGGAGCGGCT TCACCAGGGG TGGCAGACAA TTCTGGCCAG GAGTGGGTGT CCGCAGTGGG 000880 000881 CAAGAAGTGT GGGCTCCATG CCAGGAGCAG TGGCGACAGC TTCTAGAAAT TGTCTAGTAG CCTGACATCC TAAAGAATGT 000960 000961 CCTGGAGAGC TGGAAAAGCG GTTCTTCCAG ACACATGCAG GGAGCAGCGA AATGAGATGC AGTAGAAGGT TGAATCCAGC 001040 001041 TGGGAGCACA GTGCAATTTA GTTAAGAGTG ACTTCTGTGG CATCTGCTGG TCGTGGGTGA GGGCTGGGGG AAGATAATAC 001120 001121 TAATTTGGCC ATTATTACac atgtctttct tgaatcttca atcagattgt caactccttg agggtagtaa tggaatattt 001200 001201 tatgtctttt gcattcttca caaggtcggg tactcagcca ttgtttattg gttgaCTATT TGATGCATTC CGACACAATA 001280 001281 CACTTGACCG GGCCAGGTCC TGGGATCTTC ATTCATAGGA GCAGTGTTGT CACCAGTATC TGTTGGGCAC CTGCTGAGAA 001360 001361 GGAGCAATGG CGGGTACTTT TGCCACCCGA GTTGGCCTGA GGTTGCTGAG tgtatgagtt tcctagggct gccttaacaa 001440 001441 agtgccacca actgggtgat taacagaaat gtcaggtctc ccagttctag aggcgagagg tctgcaacca aggtatcagc 001520 001521 agggcctgac ccctctgtgg tgtataggag gcccctcctt gcctcgccct ggcttctgac gatttgccgg ccgactgtgg 001600 001601 tcttccttgg cttgcagctg cgtcactcca atccctgcct ttatcatcac atggcattct ccctgtgtgt gtgtgtttcc 001680 001681 aaattttccc atttttataa ggacaccagc catattagga accgccctac tccagtatga cctcatctta actcattaca 001760 001761 tcttcagcaa ccccgtttcc aaagaaggtc acattctgag gtactagggg ttaggacttc aatgtggaga tcacagttca 001840 001841 aGCTGCCACA CTAAGTGAGC TCATTCACAG TGACAAGACT AGGGACATAC AAAGGGCCGG GGTGAATATG AATGGTGTTC 001920 001921 CATGGTGCTG CCTGAAAGTG ACTGGCAGCA GTGTCAGCAG GGGAGCATGT CCTCTGTTCT CAGCATTCAC TAGAGAGGTG 002000 002001 TGCTGAGCTG GGGCCCAGCT GGACACATTG GATGCTGTGC TCCAGAGGAG GAACTGCACT CACCTATCGC TCTCCTTTGT 002080 002081 ATGGGACAAG TGGGACAGAG CCTTGATGGG GGGAACACAC CACTGGGGTT CCAGGCAGCC TTAACTATCG AGGAATGGCA 002160 002161 GGAAATTCTG TCTGCCCAGC ACCTGGTGAC CCTGGAGCTC CTCAGTTTCC CGGGAAGTTG AGTTTTGGAG CAGTCTCTTC 002240 002241 CAGAGAGGCT GGGAGTGCAT CACTTTCCCC CTGGAGGTGG CGGAGGCTGC TGGGCCCAAC TAGCTCATTG CCAGGCAATC 002320 002321 CAGAGAGAGT TCCAGACACC AGATACTGAA CAACCTACTT GTCTCCACAC CTAGTAAAGC TTGGATCCAA TGCTGCCAAC 002400 002401 TTTTCTGCCT CTCCAGTTTT GGAGCCCTTA ATGTGAAGGT GCAACCCAGA AGCCTGCAGG CTGTTCGTAG CCTGTAGATG 002480 002481 TGTTTTCTTC CCAGTAGCTG GTGTATACAG TGTTTTTGTA ttatttttca aataagcaat acatttgtgt ggttcaaaaa 002560 002561 ttaaagcgct atagaaaggt attcggcgaa atcttatccc tgcctccatt ggccagtcct gccctgcccc tcccttgtaa 002640 002641 ccacttttat tagtttccta tacaaccttc caggatttct ttttgcagat aaaagtcagt acaaatatat atctgcctca 002720 002721 tccctctact tcttacataa ttataacaga ctctacacac tatttttaac cttgcctttt tcactcgatt tatcttggtg 002800 002801 atctttccct ctcagtatgt ggagagcttc ctcattcttt ttttacaggg gcatagtatc ccattgtatg gatttaccat 002880 002881 aatttagcaa tcccctactg atgaacacag gttgttttta gtcatttgct gttaatatta caagaaacac tgcacggaat 002960 002961 aaacctgCCA TTTCATGTTG ACCCTGAACG TGTGTAACAT TTAAAAATTC TGAAAAATCT ttgaataatc aacagaactg 003040 003041 gaaacactca gttctagtat gtggacaact ggttgggttg ggtagcagct gtccttttaa agagacctcc ctgccccgct 003120 003121 ctggcatctt ccccaccacc tcttgctgac cctcttgcgt tcagcctgag cgttgactgc catctagcaa cattgtgctg 003200 003201 tttctctcat agagtattaa ggaggaaggg aaatcactca tgtactcatg tctcttcaag ggggaaactg aaaaccaagg 003280 003281 aggctgtctt tttccagcag agggaggagg gcagacttaa tatgaaagcg aTTCTTCTTC ATCGGCCCCT GCCCACTCGG 003360 003361 CCCATTTCTG TTAATCTTCT GTATGCTTGA GATTGCAGCC CCTGCCTTGC CATGTCCAGG CTTTCATCTC GGGAGCTGAA 003440 003441 AAGTGGAAGG GAAAGAACTC TGCTCTCTTC TTGCTTTTGT GCACTATCTG AGTAATTGCA TGGAGACCAG CAATAAAAAT 003520 003521 GAAATACAAG ACAGTCAGAA GTGTTGCTCC ATTACATGGa ttctctcagc agacccccca aggcagtggt agcactagct 003600 003601 cacttttcca gacaaggaaa cagtagcaga gtgaagtggc ttcaccaaga ctcataactc gcacacagaa gaactaggat 003680 003681 cagaacccag gtttttctgt cactagaacc tgacatttta gccaatctat catgctgctc cCAAAGTCtt tttgtttttt 003760 003761 cttgagacag agtctcgctc tgtcacccag gctggaatgc agtgatgcaa tcttggctca ctgcaacctc tgcctcccgg 003840 003841 gttcaggtga ttcttctgcc tcagcctccc aagtagctgc gactacaggt gcacaccacc acatccagct aacttttgta 003920 003921 tttttagtac agatggggtt tcactatatt ggccaggatg gtcttgatct cttgacctca tgacctgcct gcctcgtcct 004000 004001 cccaaagtgc tggaattaca tgcatgagcc agcttacccg gccCCAAAGT CTTTTTAAAT AAGGAGTGGT TTACAGTTAA 004080 004081 GCCTCTCACC TTCTAAGTCT GTCATTACTG ATGCTGTGGA GATGATAGTC GTGACAAAGA TAAGAGCAGC TCTGAAAATG 004160 004161 GGCCAGATGG CTACATACTG CAAAAAAGGT GGGTGACAAT GCGTCTGTGG TCTCATAACT AACGTGACGG CTGTTCCTTG 004240 004241 ACAGCTTTTC CCATTTCATA GAGTGGAATT GGCTCCCCTG CCCTTTTGCt ctttcaatcc aagaacatgt attgagcacc 004320 004321 ttctgaatgc caggcactgc gctcggtgtg agtgacaagc ctggtgCCTG GAGGCTAGTT CAGGCAGGTC AACAGAAAGC 004400 004401 TGCAGTGCCA CCAGCTACAT GTGGTATTGG TGACATGGAT GCGTTGGGTT GTGTCCAGAA TGTGACAAAA GAGACAAATA 004480 004481 CGCCATGGAG CAACCATGGA CAACAAGGCG AGTGGCTTCC AGCTGTCTTG GGTCCTCGTC ATTTTACACT ACTTGATGAA 004560 004561 GGAAGGAAGT GGGACCCAGA AGTGGTGGCT ATGAGCTAAG GTATTGAGCC ATCCTTCTGC CCGCAGCCCA GGATGAACAT 004640 004641 GACCACAACT GGCAGCTCTC TGGAGGCCAC TCGGGGTTGA AAGGTGGGCC AAAGGAACCC TCCCTCCCTT TGCTGCTCCA 004720 004721 CCTCAGCTTT TCTCATTCCT GGCCATTTGT TTATCCTGTA AGCTGGGGGC TGGGGGTCTC CCAAAGTATC ACTCATCCTG 004800 004801 AGAGTTAGCA TTCTTCCAGC GGGGCAAAAT CCTCTTCCCT ACTGAAGAAA TTCTAAACCC AGCCAGCTGA AAGAGGAAGA 004880 004881 GTGCAGGGGT GAGGGGAGGA TGGGACCAAG AGGGCACATT CCACTTGATC TCTGAAGTCA CACCTCAGCA ACGGGACTTG 004960 004961 CCCGCCAAGG CTTCTCGTCA CCATGCTTTG TTGGATTTGT AATGTGCTGT TTATCTCTCT TCTCCCGCAA GTTTGCATGC 005040 005041 AACAGCATCT GTCATCTCTG TGGTTATCTT AGAACAACTG GGGCTTTTGC TTTTTATTTA TTCTTTCTCT GAGTGCAGTG 005120 005121 CTAACCACAG CAGCCTACGG GCAGAGGGGT TGGGGAGGGA GTCAGTTGCT TTTCATTGAA GTGCTATGGT CTTCAGCTGC 005200 005201 AGCTGGTGTG AGTGCTGAAA CTGTGTGAAA CAAAAGTGTT GAAACTCAGT CCCAAGTGAC TTCTGGGGAT CCGTTGCCTG 005280 005281 TGTTTCCTAT GGATGAGTAA TTAGAAACGA GTGGTTTTCA GGTTGAAAAG GAGACTCCAG AGTCCTGATG GAATACAGAC 005360 005361 AGCAGGCACG TCTAGGGCCa cagacaggta tgtgtgctgc tctgtgctgg cagctgtgtg cagatacaaa agaagtatcc 005440 005441 cataccctcc ttgccctcaa ggaacttaGT GACAGGAAGG AGAGCAAAAT TTACAGTTGG CCTACcctct tgggcctgtt 005520 005521 tcctcattac agaaatgaat gaggttacac ttgatCAGTA TTCCTTAttt tattttattt tttttttaga ttcaggaggt 005600 005601 acacctgcaa gtctgttaca tggagatatt gcataatgcc gaggtttggg gttctaatta acccatcacc caaataacga 005680 005681 acatagtatg caataggtag tttttcagcc cttgTTTGGC GAGTGTTTCT AATGGGGTCA GGCTGTCCCC TAGAGTAATG 005760 005761 CCTCTCACAC TTTCAAAGAA GTTAAGCCAA AAGCCCGGTA TTTAGGAAAT GGTTGTTTTA GGAAGAGAAG CCTAAATGGA 005840 005841 ATAAAGACAA AACCTCGAAA TGACGAGATG ATCTCCCTGC TTCATGCATT CTGTCTAGAT CAGAGCATTT CCAAATATAC 005920 005921 ACTGAACTGA AAAGGGCACA GTACAATATG CAGTGACCGC AAAGCAAGGA ACCCATGCGC AGGTCTGTAA CAGGAAATCT 006000 006001 GAGACTTCAT CCAGCCGATG TAGAATTAGA TACTAGTTTA AATTAGCAGA GGCGCCTCAA ACTTGTTTAT AAAAGCTGTT 006080 006081 TTAAAAATAA TATTCTTATC ACATATATTT ATATTTGTAG TACAATGATA AGAAATCTCT TGCAAAAATT AGCTATCATG 006160 006161 GTTACTTCTT TGGGGTTGCC TTTTGTTCTT CCTTCTTACT CTGATATTCT CCTTCAAGAT TTACCCAACA ACTTTTCCCA 006240 006241 ATCCATCCTC TTCTTCTCAC CGCCCATACT ATAAGGATGT CATTTTAAAA GCtttttttt tttttttttt ttgagacaga 006320 006321 gtctcactct gttgccaggc tggagtgcag tggtgcgatc tcaggtcact gcaacctctg cctcccgggt tcaaggaatt 006400 006401 ctcccacctt agcctcccga gtagctggga ctacagggtg tgccaccacg cccggctaat ttttgtattt ttagtagaga 006480 006481 cggggtttca ccatgttggc caggatggtc tcaatctctt gaccttgtga tccacccgca ttggcctccc aaagtgctgg 006560 006561 gattgcaagt gtgagccacc acgcccagcc ACtttttttt ttctttcttt cttttctttc tttttttttt ctttACTGCT 006640 006641 AAAGACCGAA TATATGCCTC AACACAGTGG GTGGGATTTC CAGACTGGAA ACATGTTTTC TGTGACACTT TGTCACTATC 006720 006721 CTGCCCCATA TCACAGCGTA ATAAATTATC ATGACGCTAC ACTTATACGT AAGACTGAGC TCACGAGACA GGATCCTGTG 006800 006801 CTTCCTTGTT TCCTCTGCTT GCACATTTGT AATTTGATTT GGCTTGTTAT CTGTACCTCA GTGAAGGTTA TTTCCTTCTT 006880 006881 CCTGTTATCA TATACGGCCA GGAAAGGGGG GTAACTCATT GTAACACTTC TTTATTCTAT TGTCCTCCTA TATCCCTCTG 006960 006961 ATCTTTTATT TCCTTGTACT TCTTATATGA AGTGGCTTCT ATTTGTCTTC TGTTAAATCT AAACTTAACC ATTATAGGta 007040 007041 ggtggaagtg ttgactactt cattatgtgt tccagtgcag gcatgcatga gcacgtacat attgacagac atattatttt 007120 007121 attaagaatc acatttctgt gctcactttg gcagcacgta tactaaaatt ggaatgatac aaagaagatt agcatggctc 007200 007201 ctgcacaaga tgacatgcca aGTGTGTGCT CGCTCTCTCT CTCTCTGTGT ATATACGTAt atatataaaa tatacatata 007280 007281 gtatgtattt atatatatta atcacatttc ctttttatcc ttttattaaa attagggcta ctttatgcgt ttgggtcgac 007360 007361 cgacttttct aggaattgta tttcaggtgg taaagatggt gtttctaaat atttgttaca aaaatagggc attgattgga 007440 007441 tagggtggag caccactgGG TTAAATGATC TCCAAGGTCT CTGACATTCT TTGTGCAACA TTTACAAAAC AATGGATGAC 007520 007521 AGCCTGATTC ATGACTCAGT CAGAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT025919_smProtein_6653:6913 |
Length | 87 |
Molecular weight | 9859.4591 |
Aromaticity | 0.127906976744 |
Instability index | 53.5465116279 |
Isoelectric point | 8.34808349609 |
Runs | 15 |
Runs residual | 0.034796945505 |
Runs probability | 0.0521992580816 |
Amino acid sequence | MPQHSGWDFQTGNMFSVTLCHYPAPYHSVINYHDATLIRKTELTRQDPVLPCFLCLHICN LIWLVICTSVKVISFFLLSYTARKGG |
Secondary structure | LLLLLLLLLLLLLEEEEEEEELLLLLEEEEELLLLEEEELEEELLLLLLLLHHHHHHHHL LEEEEEEELLEEEEEEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHH HHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTT TTTTTTTTTTTTTTTTiiiiiiiiii |