NONHSAT025512
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025512 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3005 nt |
Genomic location |
chr12+:3427884..3434509 |
Exon number |
2 |
Exons |
3427884..3428892,3432515..3434509 |
Genome context |
|
Sequence |
000001 TATCTTCTGC TTCACCCCAT GCTCGGTCCC TGAGCCAGTT CTGTCATTGG TTCTTTCAGA CCAGGGCAGG AAAAGTCAAG 000080
000081 AAAGCAAAAG CGGATTCTAG GCTGTGGGGT TTGCTGTTTG CTAGCCCCCT GGCAGAGATG CCTGTCCTTG CAGTCCTGAA 000160 000161 CTGGTGGCCA AGTGTGCATG CATGCACGTG CAGGTGTGTG CATGTGCAGG TGTGCATGCG TGTATGTGCG CACACACATT 000240 000241 CATGCTTGTA CATGTTTGTG TACACGCACA CTTTTTTCTG CTTTCAATTT CAAGCTGTTG CCTCCCTGAT GTGTCTGTTT 000320 000321 AGTGACTTGA GCCAGAAAGA TTCCCGGTTC TATGTGGGAT GAGAATGAAC GCAGGCAGGT CTCCACAGAA GTGAGTAAAG 000400 000401 TAGAGCTGAG AAGAAGGACA TTGTCTCATG CCAGCCTGTC CAATAGCCAC TTTGCCCCAG TCCTGCCTCA AGCCCCAGAG 000480 000481 AGATGACAAG GCTCTCTCTG TTTGTCGACT CCTTGAAGCT CAGAAAGGTG GGTCAAGAGG TGCCCGTCAA GCGTTTAGGC 000560 000561 AAGCACAGGA CCCTGATCTT TACTAAGTCT CCACATCTCT CTTGCACAGC CCTGGGCTCA GGGCTTGGTC CCCTCTGGGC 000640 000641 AGGCCATCCA GACTAAGTGA CAGTCAGATT GTGTGTGGGG AGGCTAGAGA CATCCATTCT TCATGGATCA GCCTGAATGG 000720 000721 CTAGACAGAT CTTGCAAATG GATTGTGTAA GACAGAGTGT GGAAGAGGAG GCTGTGATCA GTGGCTTGGA GAGCAGAGTG 000800 000801 TGGTCAGGCG CTAAACCTAA GGCTTTTCTG GGAAGAGCTG TTAAGATTAG ACTGTTCTCC CAAAAAGCCA ATAATTCTGA 000880 000881 GTGTCTCCAT TAATGCCTAG GTAGCCCATA CTCTCACCCA GCCGGTGCCC TTCAGCCTGG AACCTTTGGA TGGAGGATTG 000960 000961 GACCTTGTGA CCTTCAAGTT CCCTTCCGAA CCAAATATGC TCTAACCCAG GAGATGGTGC TGTTGCCCAG GAAGCCGGTC 001040 001041 ACCATGACGA GAGTACCCGC TCAGATGAGG ATGCAGGCGG AGGCGGTGAA GGTGCTGGAG GCCAGGATGC TGAGGTAGCT 001120 001121 GCTCCTCTCC ACCAGGGTCC AGATGCCCAT GGCCAGGACA GCTGCCCCCC TGACCTGCAG GAGACCACCA GGTTGGAGCA 001200 001201 GGGGGTGGCG GGGGCCTCAG GAGCTGCCAT TCCTTGAGTG CCCGCTGGGT ACCAGGCACT TCTCGTGCAT TGTCTTATTC 001280 001281 AATTTAGGCC TCCTAAGAGC CTGTGAGAAC AGTGTGGTGG CCTAGCTTTA CAGATGAGGA AACGGAGGCT GAGAGAGGTT 001360 001361 TGCAGGCTTG TCCAAGGTCA CACATGTAAG CGAGCTGCAG ATTTTGAATC TGGGTCTGAC TTCTGATTCT GTGCATCTTA 001440 001441 CTATGGTTCC TACTGCATAC GAGGCGGGGA GAAATGACTT CAGTTTTGGG GATGACTAAT ATACCTGAGT CCCTTCGCCT 001520 001521 CCCCTCCCCT CAGAGCGCTC CCTCCCTCTG TCCACGTTTC CCTGATGGAT GTGGAGGTGC CATTTTGAGC ACCTCCCCTT 001600 001601 GTTCAATCCT TATATTTGCC CATTGGGGAA GCACGGCTGG GCCCCTTATC CCTCCCTGTT CTACAGAGGA AGGAACTGAG 001680 001681 GCCCATGGAG GAGAGGTAAA TGGCCCGAGT TAGGGGCAGG GCCAGGACCA GGACTCAGAG CCCAGGGCCT GCTTGCTCAG 001760 001761 TCTCGCTACC TCCATGATGG AAGGGCCACT GTGCTGGACA AGTTGGAGCT CCCTGGGACC ACAGGAGGAG GGAGGAGAGC 001840 001841 CTTCTTTGCT GTCTGACTCC CTTTCAGTCC TGAGAGGGGG CAGGGACGGG ACACTGCTGA TTTGCAGGTC TGGGGGATGC 001920 001921 CTTCTTGGAA ATAGAGTACC TGGGAAATGT AGCTGGGGTG GTGGGGCTTG ACTGTTCTTT CCTGCCATGA AGCTGAGGAG 002000 002001 CCTTTTAGTG ACTGTTATCC TCAGCAGAGC ATAGTGGGTG GGTGCAAGTG TCCTCAAGGT GCCAGATGGG GGCTGTTTGG 002080 002081 AGTGTTTTCC CAGGATTTGG GTCCTCTGGG ACCTCTGACC ATCTCTGTCA TTTGCTCCTG GGAAGGTGGA CTTCTGTCTC 002160 002161 CCAGTCTCTC TGCCCGCCAT TTAGGGACGG GTCCATTTCC TCTGATGGTC AGTAGATGCT TCCTCAAGGG GTCTTGGGTG 002240 002241 TAGCCAAAGC TAGAGAAGCC CTCCCGGGCT CTGTTCACAT CCCCTGATGC TTTTCCCTGC AAGTTGTCTC CCGTCTGCCC 002320 002321 CAGGAAGACT CTCTGTATAA CCTAACCTGT CACTTCCCAG TTCTCTGTTC CGGGGAGTCG CAGACCTTGG CTGAGTAAAT 002400 002401 GGAAGGTGGT TCTTAGCAAT GAACAGGCAC CTACATTACT CAACTCGCAA GTATTTTACC ATTTTGCCAT TTTCTCTTCT 002480 002481 GAGCTTTGCA ACAGCTCTGT GAGGGTGGGG CCGGGCAGGA GGGGACAGGC TATCCCTGTC TTGCAGATAA GAAAATTGAG 002560 002561 GCTTGGAGAG AATAAGAATG TGCCCAAGAT GACACCATCA GAGGGTCAGA ATTGAGGTGC AAACCCAGTT ATTTGAGGGC 002640 002641 AAATCCAGGC CTCTGTCCTT GGATCCCCCA GAGTAGGCTG GGCCTGCTTC TCTCTTACTT CTACGTTTTT AATAGACATG 002720 002721 ATTTCTTCAA AGTGCCATTT TATCTCCATA GGTACCTCCA GACACCACCC AGGCTGCAGC AAATGGAATG GGAGAGGCTA 002800 002801 ACACACCATA ATTTTTCAAT TCCATGATGC CCATTTTTTC TCACATTTTA ACGTCTCTAA AATTGGGGCA CATCTTATGA 002880 002881 TTGATGGCAT CTTACAATTA CACTTGGCAG TACTTTTTCT TGGTGATACA AAAAAACAAC AGTGTATCTT ACAACTGATA 002960 002961 GCTTAGATTC AGTGAAATCC TAGAATACAA CAGGTTTGAA AATTC |
Predicted Small Protein
Name | NONHSAT025512_smProtein_137:361 |
Length | 75 |
Molecular weight | 8603.1248 |
Aromaticity | 0.162162162162 |
Instability index | 53.2109459459 |
Isoelectric point | 8.17254638672 |
Runs | 13 |
Runs residual | 0.0330257086355 |
Runs probability | 0.0476607829549 |
Amino acid sequence | MPVLAVLNWWPSVHACTCRCVHVQVCMRVCAHTHSCLYMFVYTHTFFCFQFQAVASLMCL FSDLSQKDSRFYVG |
Secondary structure | LLEEEEELLLLLLLLEELEEEEEEEEEEEEELLLLEEEEEEELHHHHHHHHHHHHHHHHH HLLLLLLLLLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiii iiiiiiiiiiiiii |