NONHSAT025185
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025185 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
4395 nt |
Genomic location |
chr11+:131607718..131612114 |
Exon number |
1 |
Exons |
131607718..131612114 |
Genome context |
|
Sequence |
000001 AATGCCCAGT ACAAGGTTGA CACCGCGGGC CCCAGGTTGC CATTCTCTAT ATTTTCCTTC CTTTGTCCTA TTTGGTTTCT 000080
000081 GAAGTTAAAT GGTCTCTTTT TTGATATGAA AATTAATTTC TGGACAAAAA GAAATATGCC TGCACAGGGG CCAAATTTGT 000160 000161 GTTGTCTCCC AGCACGGCTG TAATTACACT GTAGATCAAA CTGACGCCTT AGTTTTCAGT GGCTTTTTTC CCTCTCCGAT 000240 000241 GTCCCTGAAG TTGCCAGGCT CACCAAGAGC AGCAGTTTTC ATTAGCAGCA AAGCCAGGGG ATGGGGATGG ATGGCCGGGG 000320 000321 CCAGCCCTCA CTCCTGGGTT TCTCTCCTCA AATTCTTCTT TTGGATGGAC ATGTGCAATC CAGGCCAATG CAGAGAACTG 000400 000401 CAGGACTCAG GGTCCTGAGT TGCTTGCCAC AGTGTGGGGG TGAATGGCGG TGGCTCTGGG GTACCCCTCA TCCTATGGGT 000480 000481 TTCACCCTGT GGAACAGGCA CTACCAGGCT TCTCTTTTAA GTGTCAGACA CAAGAAGGGT CTCACACATT TCCCATGGTC 000560 000561 TCTACACATT TCCCATTACC TTTGTGCCCA GCAGAAATCT GTGTTCACCT GCTAAAAATG GTCACTGTGA ATTAGTATCA 000640 000641 AGCTAAGAAC TTGTGAAATA GGGCAGAACC AATGCAAAAT TTTCCGGAGT CATGAAAGTG AAGTGGCTTT TACACTGCAT 000720 000721 TCAATATTGT GAGTTCTAGA GGAATTTTCA GGGAAACTGT GGCTCCCTTC TTATCCTAAC TTTCATAGTC AATTCTCGAT 000800 000801 TGCCCATACA TAGCTCCACT ATTGTTTGTT GGGTATAATT AGACACTATG TTCTGTGGCC CTCAGGTGGA CATCTATGCT 000880 000881 TTGCCAATAA GCCATGAATT ACTCCCCAGA GAAGCTTATG TGATTTTGAC ATCTACAAGG TGAATGCAAA CTATTTATTC 000960 000961 ACAATGTGAT GGGCATTCCT TCAATTTCCC TATAATATGT TGAATGTAAA TGATTTGTAC GTGGAGAGAG GAGTGCTTGG 001040 001041 TCAGACTTCA TATGTCAGAA AGTCAACCTG GGTGGTGTGA ACAACTCCCG TCAAATGAGT CAAAGCCCCA GAATGAGATT 001120 001121 CTATGGTCTC TTGGATTGAA CTTGGGGCCA AGGGATGTGG GCTTTGATCC CTGCAGCTTT GTCACTGGCC CTGAGTGGCC 001200 001201 ATTCATCTAA TTTTTCCATC TGCCAAGTGA AGCAACAATC CCTCCCACTG CCAAGCTTAC AGTCACATTA TAAAGATGAT 001280 001281 TGAGATTCCA TGCCTCAGTG GACTTCAGGA GGAAAAGTGT TACCCTCTAA ATCCTTCCTC ACACTCCCAC ACCCACAAGT 001360 001361 TTTCTTTTTT TTTTTTTAAA GAGTCCAGTG TTAATAGTGT TTTGACTGCT TTCAAGATAT CAAAACAGCT TTTGTTGGAA 001440 001441 TGAAATAAAC AAAAGAAGAT GGGTTTTGGA ACAGAGCATT TTAAGGTTCA AATTTCAACT TTATCACGTA TGAGTATTAT 001520 001521 AAGTCAGTTA CTCACACTCT TGGAACTTTA TTTTCCTCAT CTGAAAAGTG AGGACAATAA TGGCTCCCTT GAAAGGCCGC 001600 001601 AGGGATAATG AGCTGCCATT ATTGCATCAG TGCAATTCCA GCATAGTGAG AAAGGTTTGT GTCTCTTAGC TGCTTTCTGA 001680 001681 CCGGATGGCA AGCCTCTCCT CACCCCACAC TGGCCGCCGT TGGCATACCT ATGTGCATGC TCTGTCCTCC GCGGTTCCTG 001760 001761 TGGAGAACTC TAAAAGTCAG GGAAGCTCAG TGCCACGTTT TGGAACTTGT CAGCCATAGA GCAACCTACC TATTTACTTC 001840 001841 CAGTGGATGA ATGGGAAGGT ATTGCTGTAT CACATAAGGA CTCTCCTAGG GAGGGCAGTG TTAGCAGCAT GAAAAGAGGG 001920 001921 ACATTCCAGT GTCACACAAA GTCCCAGATG GGAAACGGCA GTTGCCAAAG GCAGCCTGAA GTGCTGCGTT CTCTTCGCTC 002000 002001 TTCAAATGCA GACAGGTCTA TAGCAGCAGC TTGAAGATGA AGACCCTGGA AAACCATGAG CAAGGGGGCC TCAAAATGAC 002080 002081 AGGGAAACAC CAACAATGAG GAGGGAGCTA AACGCACAGT CTCTTACACC CAGGAGTGTG ATTATCTGAC ATTTTGGTTT 002160 002161 AATGAAAAAA TCAATAGTTT TGGAGCCAAG CGTGGGTTTG AAGCTTCGCT CTGACACTTT ACTGCGCAGA TTGCTGAGTA 002240 002241 AGTTACTTTG GTCACCGACT CTCAGTTTTC TTATTTACAA TACTGGGATA ATGCCTCACT CGCAGGGCTG ATGAATGAGA 002320 002321 TCACAGTGGT GTGGTGGAAA GCATGGGCTA CGTTGTAAGA GTGTATTCAA TTCCCAGCCT CACTGGTTAC ACTTCTGGGT 002400 002401 CTTTAGGAGA GCTGCCGGCA TCCATGTGCC TCGATTTCCA CATTGTAAAA TAAGGGTAAT AACTGTTGCC TGTCTCAAGG 002480 002481 GGTGTTGTGA GGGTTATGTA TGGAGCACAT AAGGAGTCTA AGGTGCACAA AATGAATACT CACAATGAAC GCTCAACAAA 002560 002561 TAGTTCCATT TTTAAATTAA TAAATGGCTG TTAGTAATAT TATTATTTTA TTAGTTTTAG CTTATTATCC ACAAAATAGT 002640 002641 TCTTACCTAC TAATTGGACA AGGGTAGGAC ACTAATTAAA CGATGTGTGT CATTTTTGAT GGCTCACACT AAAATCCATA 002720 002721 GAAAAGTGTT TATTTTCTTC AATTTTTTTT CTTGACTCTG GGGTTTCTGT CCTTCTAATC CATGAGTCTC TCTCTGTCTC 002800 002801 TGTCTGGGGT TTCTGTCCTT CTAATCCATG AGTCTCTCTC TGTCTCTGTC TGTCTCCTTC TTTCCTCTCC ATGCAGTAAA 002880 002881 ACAGAGCTGC AGGCAGTCAA TTTCGAGTCA GTGGGCTGTG AAAAGCAGTT AGAATAATAG TTTATTGACC CTGAATGTGG 002960 002961 CAGCTGGAAC TGAGGGTCGG CTGGGCTCAG GCACAGTGTA ATGGTCACAA TAGAAGTTTG ATCATCTTTG ATCATTTCCT 003040 003041 TGGACTTTAA GAGAGAAGGT GTTGCCAGGC ATGGTGGCTC GCGCCTGTGG TCCCAGCACT TTGGGAGGCC GAGGCGTACA 003120 003121 GATCACAGGT CAGGAGTTTC AGACTGGCCC GACCAACATG GTAAAACCCC GTCTCTGCTA AAACTGGAAA AATTGACCGG 003200 003201 GCATGGTGGC AGGTGCCTGT GGTCCCAGCT ACTTGGGAGG CTGAGGCAGG AGAGTTGTTT GGACCCGGGA GGCGGAGGCT 003280 003281 GCAGTGAGAA GAGATTGCAC CACTGCACTC CAGCCTGGGC AACAGAGCAA GACCCCGTTG AGAGAGAGAG AGAGAGAGAG 003360 003361 AGAGAGAGAG AGAGAGAGAG AGATGTTTTT TGGAGCCTGG GAGCACCTCC AAATAGCCCA AGTCCAGGGG CGGTAGCCTA 003440 003441 CCCAGAAGGG GCTGGGTTTG GTTGGAAGGA GATAAGTGGA GGAGGGCAGG ATGAGGGCCT GAGTTCTGTA CCACTTGTGG 003520 003521 GAGTGGAGCC TTCATCACTG GGGGTCTGAG TGCCTGAGCA CGAGGGATGC TGATCCCCAT TTCAAATGTG TCCCAAGCAT 003600 003601 AGACATGCGC TCTGTTTTCT CAGATTACCT TTGGAAGCTG GACTTTTCTC CTAAGCACTG CAGTGATATG CCTTCTTATT 003680 003681 CACTCTGGTG ATCATGGATT TTCCGGTAGA AATGTAATTA TAAATAAAAA GTACATCTTC AAACTACTTT AATACTTCCA 003760 003761 TATTAGAAGC AATTTGTTTG TAAGTGGAAT TATTAATAAA AACATAGTTG AAAGCAGAGA CTAAGGAAAT TCAAAGAGAA 003840 003841 AGAGGAGAAC ATGAATATAT AAATAAAGGA TGGCCTATAT TTTTACATAA TTTGTGAATT AAAAAATAGA AATGTATTGT 003920 003921 CATAGACTGT ATAAACTCAT GCTTCCTTCG ATAGCTCAGC TGGTAGAGCA GAGGACTGTC GAAGACACGG AATCAACCTA 004000 004001 AACGTCCATC AGTGGTAGAT TGGATAAAGA AAATGTGGTA CATACGCACC ATAGAATACT ATGTAGCCAT AATAAGGACT 004080 004081 GAGATCATGT CCTTTGCCGG ACCATCAATG GAGCTGGAGG CCATTATCCT TAGCAAGCTA ACACAGGAAC AGAAAACCAA 004160 004161 ATACCGCATG TTTTCACGTA TGAGTAGGAG CTAAATGATG AGAACACAGA GACACAGAAG AGAACAACAC ACACTGGGGC 004240 004241 CTATTGGAGG GTGGAGGCTG GGAGGTGGGT GAGGACCAGG AAAAATAACT AATGGATACC AGGCTTAATA CCTGGGTGTT 004320 004321 GAAGTAATCT GTACAACCAA TCCCCATGAC ACAAGTTTAC CTATGTAACA GAGCTGTGCA TGCACCCCTG AACTT |
Predicted Small Protein
Name | NONHSAT025185_smProtein_443:634 |
Length | 64 |
Molecular weight | 6892.9959 |
Aromaticity | 0.111111111111 |
Instability index | 41.7142857143 |
Isoelectric point | 6.36883544922 |
Runs | 12 |
Runs residual | 0.0455134434726 |
Runs probability | 0.0263277983866 |
Amino acid sequence | MAVALGYPSSYGFHPVEQALPGFSFKCQTQEGSHTFPMVSTHFPLPLCPAEICVHLLKMV TVN |
Secondary structure | LEEEELLLLLLLLLLLLLLLLLLLEEELLLLLLLEELEELLLLLLLLLLHHHHHHHHHHE EEL |
PRMN | - |
PiMo | - |