NONHSAT024533
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT024533 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2390 nt |
Genomic location |
chr11-:118866295..118868684 |
Exon number |
1 |
Exons |
118866295..118868684 |
Genome context |
|
Sequence |
000001 GCGCCGTCCT GCAGATGTGC GGGGACGCGC GCCCGCCGCA ACGTGAGGCT CATAGGCCAC ACGCAACTCT GAGCATTGGC 000080
000081 CAGGACCTGT AGTAGCCAAC AGGacactta ataactgatg tataggtgcg cactgtgtgt ccagagcttt acgttaacca 000160 000161 cctcactgtg tcatctcgct gaggttgtgt ggtttactat tactgctatt agcgcatttt taagcgggaa acctgaggca 000240 000241 tgaggaggta aggagctttg aggagggttg cacgggtgtt aagtagcgcg gtcagcacct gatccccgtc actcATCAGT 000320 000321 ACGGCGGTTG GAGGGGAATG CCTGCTGGAG GGGACCACGA ACTAAACTCA ATCGCCCCCA CAGGGTGTGC TCGCCGTGGT 000400 000401 TCCTATAAAG CTGTAAGGGA GGCTACACAG CGTGCAGCGT TGTTGCTGAG GGATCGCACA CTTCCCGTAG ATTTTGTTGC 000480 000481 TAGTTCTGGT GCACTAACGT GGATGGACTG CTTGCTGTCT GTAGGGCCTG CCCACGGTCA GCGCTACAGA ATTCAGGCCC 000560 000561 GGCGTAGCTA CTTCCAACCC TTCAGATCTT CACTTCCTGT TGGAACTGTC CTCTAGACTG TAGCCTCTGC CAGAAATAAT 000640 000641 TCATTTTGAA TACCCTTGTA ACACCCAATT CCTTGATCTC CTATCATTCC CCTGGCAGGG TCAGTCCTCG ACCTTGTCCC 000720 000721 CCCAAATTGC TTCGTCTCTG AATCCAGACT CTGAAGTTCG GCTCTGCCTA CCACCTTAAG TTATCCGATG TGGCCTTACC 000800 000801 GTCAGCCTAG TCTTTGACTA CAGGAAGACC TCTCTTCCTG AAGAAGACGC CTCTTTTCAT CCATTCACTC TGGAAATGAT 000880 000881 TCAACGTCTG CCTGCTGCTG ATGCTTTACT CTCCACcagg ggttttcgaa gtgtgcttcc ccattccccc tgggcctata 000960 000961 gcatcagcat cagggaactt gtcagtaacg cacattcttg ggccccaacc cagaactact gaatcagaaa cttggggtga 001040 001041 gggcctgtcg tggtggctca tgcctgtaat cccaacactt tgggaagcag aggagggtgg atcacctgag gtcaggagtt 001120 001121 gaggaccagc ctggctaaca tggtgaaacc ccgtctctac taaaaataga aaaattagcc agatgtggtg gcgtgtgccc 001200 001201 ataatcctag ctactcggga gactgaggca ggagactcgc ttgaacccaa gaggcggagg ttgcagtgag ccaagattgc 001280 001281 accactgcac tctagcctgg gcgacagagt gagactccgt ctcaaaaaaa aaaaaagaac tcagggtgag gcccagccgg 001360 001361 ctgtggtttt atgagctttt caggggatac tgatgcggga tcaaatttga gaagcactgG TCTAGGTCTT AGATCCTCTT 001440 001441 GCTTCAGTTT CGTCATTGGA TCTCAGGAAT GTTCAGCTGC CCTCTCAAGG CAACTTCTTA CTTCACTTGA CCTTCCAAGA 001520 001521 CCTCTCGTTC TGTCAAACCC CAATTTTGGA TCAACCCAGG CATGCTTCCC TCATGTGTTC CAAAGCTGGT CAGAGTAGTC 001600 001601 TACACCACTA TCTGCTTCAA CTTCTAGTAA CGTCTAAGCC TTCAGCAGTT TTGCTTATGA AACTGCTTCA CTGAAGTTCT 001680 001681 CCACCACCAA GTAGTCAGCT GGCATCGGAA TTCGGCTTGT GTCAAATGGA ACTCAACATC TTCCTCTTCA GGACATCCCC 001760 001761 TATTTTCATC CTCCCAGTGA ATGACACCAC CAAGTTAAAG CCTGGAggct gggtgtagtg gttcatgcct gtaatcccag 001840 001841 tagtttagga aaccgaggtg ggcagatggc ttgcgcccag gtgtttgaga gcagcctggc caacatggcg aaaccctgtc 001920 001921 tctacaaaaa agtactgcca ggcgcggtgg cttacgcctg taatcccagc actttgggag gctaagcagg cagatcacct 002000 002001 caggtcagga gttcaagacc aggctgggcc aacatggcaa aaccccatct ctactaaaaa tacaaaaatt agcctggtgt 002080 002081 ggtggcatgt gtctagtccc agctactcga gaggctgagg caggggaact gcttgaaccc aggaggcggg ggttgcactg 002160 002161 aacctgttgc gccactgcat tccagcctgg gtggcagagc aagactctta tctcaaaaac aaccaaacac aaaacaaaaa 002240 002241 ttagctgggt ctggtgacat gtgcttatag tcccagctac ttggggggct gaggcaggag gattgcttga gcctgggagg 002320 002321 ttgaggctgc agcaatgagc tgtgtttgtg ccactgcact ctagcctgga caacaaaatg agaccttgtc |
Predicted Small Protein
Name | NONHSAT024533_smProtein_1370:1597 |
Length | 76 |
Molecular weight | 8015.8715 |
Aromaticity | 0.0933333333333 |
Instability index | 70.0786666667 |
Isoelectric point | 5.60357666016 |
Runs | 9 |
Runs residual | 0.0289361702128 |
Runs probability | 0.0316394826198 |
Amino acid sequence | MSFSGDTDAGSNLRSTGLGLRSSCFSFVIGSQECSAALSRQLLTSLDLPRPLVLSNPNFG STQACFPHVFQSWSE |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEEEEEEEELLHHHHHHHHHHHHHHLLLLLLEEELLLLLL LLLLLLLLLEEELLL |
PRMN | - |
PiMo | - |