NONHSAT023080

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT023080

Source

NONCODE4.0

Same with

,

Classification

sense

Length

5875 nt

Genomic location

chr11+:74910599..74917445

Exon number

2

Exons

74910599..74914472,74915445..74917445

Genome context

Sequence
000001 tgtctgcagc tgccagggct ggaggtgaga ggcccagagg gctccagctg tccaggccag ccagccactt caagggttga 000080
000081 tgggactaat ccctgcacac ctgtctccca tctgaggcCC TGTGTGGCTG GGGCACATGA GTCTAGAAGC TCTGGTCTAT 000160
000161 GGGAAAGCAA AGAGAAGCCC AGGCCTCTTG GCTTGGGCTG GCTTCTATCG GGTGCCTGTG AGCCCTGGCA GTCCAGATCA 000240
000241 CTTCGCAGAG TCCTTGGCTG GAGGTTTTCC TCGCTACCTA GGGAGTGAGT GCAGGCTGGG ATCAAACACT CCAGGGGGCA 000320
000321 AGCCCGGGGA CATGGCCAGC CTGGGGATGT TTTCTTACAG TTGGTGTGTA GAATGTGGGG GAATGATGCT CTCCTGGCTC 000400
000401 CCTCCCTCTT CTTCTCTACT TTCTCTCTGC TTCCCTCTCC CTGCCCACCA CCTCAGCCCA GGCTCAACTT GCACATAGAC 000480
000481 AGCCCTTGAG GTGCCTGCTC CTCAAGCCGT CTTTGCTCAG CCAACGGGTC ACGATCTCGG ACTCCCAGCC AGCTCTACCC 000560
000561 CAACTGGCTG TGGAACTTGG GCCTCTCACA AGCCTTCCCC GCTGCAAGCC CTTGGCCAGC TGCCTGCCCT TGGAGGCTCT 000640
000641 TGAAGTCTCT TCCTCCTCTT CCCACTCCAG GTTTTCTACA CCAACTGCAG CTGCGTGGTG GAGGGCAACC CCGTGCTGGC 000720
000721 AGGATCCTGC GACTCAACGT GCAGCCATCT GGTGGTGCCC TTCCTGCTCC TGGTCAGCCT GGGCTCGGCC CTGGCCTGTC 000800
000801 TCACCCACAC ACCCTCCTTC ATGCTCATCC TAAGGTGAAG GTGGGGGTGG GGCAGGGGCA GGTGGATACC AGGAGGTCCT 000880
000881 TAACCACAGG CAGAACAAGG AATTCCAAGG ACGGAGTTCA AGAAAGGAGG CCACTTGGGT GTCCTGGCCC CCACAATATG 000960
000961 GCCttaactg tgttcatccc atggcaacct actgaggcaa ggttttctcc ccatcttgca gataagaaaa ttgaggctca 001040
001041 gagaagttca ggagctggcc cccatcacat agcaagtgtt gggtggaata gtactggttc cctggcccac agcccaggct 001120
001121 cctacttgcc cagGGGAGAG GAGGACATAC CTAGGGCCCT GTCCTGGCCT CTGGAGGTGA GGGCATAATA CCTGCAATGG 001200
001201 ATGAGCTGCA GGAGGTGCAT CTAGGAAACC AAACTGTGTC AGTCTGGTGC ATGACTCTGA ATGCTGCTTC AAGGCTACAT 001280
001281 ACAAGTGCTT ATTAGGTGCC CGCTGTGGAC CCAACCCATG CTGAGCACTG CCTTTTGGGC CAAGATCTTT GTGGCCCTCG 001360
001361 TCCTAAGAAT GCCTGCTGGC CCTGACAAAT TGTCACCTGA GTTCAAAGTC AGGGTCTCCT GGGGTGAGGG CTGGGATAAG 001440
001441 AGGACTGAGT GAGAAAAAAA TAGtttttcc tttttttttt tttttttttt tgagatgcag ttttgctctg tctcccaggc 001520
001521 tggagtgcaa tggcgcaatc tcggctcact gcaacctcct cctcctgggt tcacgccatt ctcctgcctc agcctcccta 001600
001601 gtagctggga ttacaggcac ccgccaccac acccaactaa ttgtattttt agcagagacg gggtttcacc atgttggcca 001680
001681 ggacggtctc gaactcctga cctcagtgat ccacctgcct tggcctccca aagtgctggg attacaggca tgagccacca 001760
001761 cactcggcTG AGAAaaacag tttttctatt ctctcactca acaatcaaca cagaagactt ctgcaaccag aagtgtgggg 001840
001841 gtattttccc acacaccagg cactcaatta attctgcagt ggaccctagc cagtgtcccc caattctatt ctgacacaat 001920
001921 ctacctggag acagcatcag atcccacagg ctgagtgctc agtcccacaa gactttccct ccacttccca tgccaaccac 002000
002001 aagcctcagg ctgttttacc aatgattctg actgaccagc cgtatgctgg ggtttccaca gccccatctt tgagtttgct 002080
002081 ttatttgcta gagtggctca cagagctcag gaaaacatct acttaatgtt tatcggttta ttataaaaga tattacaaag 002160
002161 gatacagatg aagtgatgca tacggtgagg tatgggggag gagctttcat gccctccctg gctgcatcct gcagggacct 002240
002241 ccatgtgttc agctatccgg aagctcgcca aagcttcatt atgtaggcat gattgattaa atcactggat attggcagtc 002320
002321 acctcaacct tcagcccctc tccccttgct ggaggttggg gctgaaagtc ctaaccctct aatcctgcct tggtccctct 002400
002401 ggtgaccaag ccccagcctg aagctactag gggctgctca ccatcaatca actcattagc atacaaaaag acacttttca 002480
002481 ctttgaacat tccaagaatt ttaggagtgt atgccgggaa gaccaaatac acatctcaca atatcacaGG GACCTCAGAG 002560
002561 CAAGATAATT TCCATTTTCC TTCTCCTGGG ATTATTTTAT TCACTATCTA CTTTCTAGGA AATTAGAAGG GAAATGGAGC 002640
002641 CTCTTGCAAA TACCAGAAGA CATGTAGATC TAGAACACAA GCTGGCCTGG GAGAGAAAAT AGAGGAATCA GATGCCCAAC 002720
002721 AGGCAGCCTG ACTAAAagga gttgagaaca cagcctcagg gctgcgtgga tacaggccct gaccgctgtc agccatgaga 002800
002801 tcttggccaa gttattgaat ctgtctaagt gtcagtctcc ttatctgtaa aatggggcta atgtacacct cgctcatagg 002880
002881 agtgatgtgg ggttgcaggg cagagttact gagcccgtag taagcgctcc ataaatgCCA GCCACTGGTG TTGTCTGGCA 002960
002961 GGAGCTGGCG TTACAGTGGT TGGGGATGCT GGGGAAGTGT CTGACTGTCC CAGCTCCAGG TCTTGCCAAC TGTAGGAGTA 003040
003041 AGGGGAGAAT TTGATGGGAC CAGTGGGTGG AGGAAGAGGA GTGATGTCTG TGACCAGAAA CATACAGAGG TCAGCACAGG 003120
003121 ACCCTGATGG TCAGTGGGTG TGTTGTCTTG TATATGGGAC CAGGCTCTGC AGGTTGAAAA AGGATGGGGT ACGTCCCTGA 003200
003201 GCCCCCAGCC TAGATCATCA GATGGGAGAG AGGCTGGCTC TGGGTGGTGG GAGAGAAGGG CATAATAAGA ACCCTTCAAC 003280
003281 GTTGATGCAT GGCCCTTGGG GGCTGGAACC CCTCCAACCT CATGTTGCCC ATGTCTCTGC TTGTTAGAGG AGTGAAGAAA 003360
003361 GAAGACAAGA CTTTGGCTGT GGGCATCCAG TTCATGTTCC TGAGGATTTT GGGTAAAGAT CTTGCTTGGG ACCATTGGTG 003440
003441 GTGGTGATGG GGTCCAGATg cccactgtgt gccaggcctg gggcacaggc atgagcggaa ttcaatccct gatcttaggg 003520
003521 ctcacaagct catggggtga cagacCTGGC CCAGCTCTCC TAGAGCGGGG TATAGAGGCA GAGTCTAGAC AGCCCGTCAG 003600
003601 GAAGCCACCT CGGATGCAGG GGTGGGGCGG GCTTGAGGGC CAGACAGCCA AGAGGCCCCA GTAACCCAGA GCCCCTGAGG 003680
003681 GGTTGTACAT GCCAGGGAGG GGGCAGGGTA GGACGGTGGG CCTTCATTGT CCCCTGAGCA CCACCTCCCT CAGCCTGGAT 003760
003761 GCCCAGCCCC GTGATCCACG GCAGCGCCAT CGACACCACC TGTGTGCACT GGGCCCTGAG CTGTGGGCGT CGAGCTGTCT 003840
003841 GTCGCTACTA CAATAATGAC CTGCTCCGAA ACCGGTTCAT CGGCCTCCAG TTCTTCTTCA AAACAGGTTC TGTGATCTGC 003920
003921 TTCGCCTTAG TTTTGGCTGT CCTGAGGCAG CAGGACAAAG AGGCAAGGAC CAAAGAGAGC AGATCCAGCC CTGCCGTAGA 004000
004001 GCAGCAATTG CTAGTGTCGG GGCCAGGGAA GAAGCCAGAG GATTCCCGAG TGTGAGCTGT CTTGGGGCCC CACCTGGCCA 004080
004081 AGAGTAGCAG CCACAGCAGT ACCTCCTCTG AGTCCTTTGC CCAAgattgg gtgtcaagag ccctgtgttc cattctggct 004160
004161 cctccactaa attgctgtgt gacttcaggc aagacattga tcctctctca gcctttgctt gctagtctga accaaagagt 004240
004241 tgTTTGGGCA TTTGCTGTGT TGGCCATTTC TGGAGCAAGA GGGTCTTCTT CCTCCTTCCC CCAGCCAGCC AGCTGTCCTG 004320
004321 GGGCCAGGCT TTCCTGGGTG GAAAGAAGTA TACCTTTCCC TGGGGCCCTA GGATAGCAAA GTGAGCCATA GTGGGCCAGG 004400
004401 CTGCCCTCCA TGCTGGGCCC CAGCCCAGGT CTGCACTCGC CTGGATCACC TTCTTTGAGC CTTAGCCATC TCCTGTCAGG 004480
004481 TAGGAATGAA CTTGCCAGCC TTCAGGCTCG TTCAGCTATG ACCATCTGTG CGGTCAGGGT ACACTCAGCT CTCCTCCCCA 004560
004561 ACTCCAGCAG CCTTTAAGAA GTGTCCCTTT GGCGCCCCCT GGAGGCAGAG CACTGAGCTG GACCCTGGGT AGACTCCCAC 004640
004641 AGGGAGGACG GAGCTGGCCT CAGGAGTGGG ACACCCAGAC TTGGCAGGGC CTTCAAGAGG CCTGTGTGGG GGCCCCAGGA 004720
004721 ATCCTTAGCT GAAGCGGGGA GACTCACTCT CCATCTCAGG AAATTCTAGC CCTTGCCCTC AGGGAGCCAC GGTTGAGGGT 004800
004801 GAGGCCCAAC ACCTGCCTTA GGGCCCTGGG TGGGCAAGTC TGGGCCCTGG GGTAGGGAGG GAGACTCAGG CCCACACTTG 004880
004881 GGTATTTTCT AATTTCAGAC AAACACACAC TCAGCGCGCA CTCACTGATT CCTACACATT GCCAAGATTT CACACATGTG 004960
004961 ACCAGGGGCC ACCAAAGTCC CTGTGACCTT TGTGACTAGG ATCCTAATTT CTCTATTTTC TCCTGGGTGC CTGGGTCTGT 005040
005041 GTCACCTGGG GCAGTGTGGA TAATGTTTAG TTCTGTGACA CTGTTTTTTG GGGGTGGCAC CTGGTTCTCC GATGCCTGGG 005120
005121 CTGGTGTCAG GCCCAGGACT GTAGTGCTGG GAGCAGTAAA GCTCAGCTCT GTGTAATGAG TGATGCTATG GCTTGCTCGT 005200
005201 GTCTTATGAT CCAATCCTTT TCTACATCAG CCCTTGTTTT GTTTTATGGC TAGTCTTATC TGGCCTGGTT ATTTCCTTGC 005280
005281 GGGGAGGAGA GGGTTTGCTA ATCTGCTCCC AGCCCAACCT ATTACCACCC CACCTCGCTG GGACCTACTG CTCGGGAGGC 005360
005361 AGCAGACAGG GAGCCACCAG CAGTGGCTTC CTGGCCCTGT GCTGGGGGTG GGGGGAAGCT GGGGGCACAT GTGGCCCTTG 005440
005441 CCTTCTGAGC AGCTCCCAGT GCCAGGGCTT TGAGACTTTC CCACATGATA AAAGAAAAGG GAGGTACAGA AGTTCCAATT 005520
005521 CCCTTTTTAT TTTGCTGGTT GGTATCTGTA AATGTTTAAT AAATATCTGA GCATGTATCT ATCAACGCCA AGAATTTCAA 005600
005601 AGTCTCCTTC AACAATATGA GGCTTTTAGG ATGTTTATAT TCCTTCATCC CTCTTGTTTC CCAGGTTTTG CAGGGAAAAA 005680
005681 AAGTCTGGAA TTATAGATAC AGCTTATTAT TAAATTTGTT CTTGCATAAT GTCTCTTCTA TTACAAAAAT TCTTTCTTCA 005760
005761 TAAACTGCAT TAGAGGTTTG CAACAACCAc atcatttcca ttaacttaga tttaggtttt actggattca ttgctcacca 005840
005841 ttattgcttg tatattacat cttttccaat cttta
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Predicted Small Protein

Name NONHSAT023080_smProtein_3758:4054
Length 99
Molecular weight 10967.5472
Aromaticity 0.0816326530612
Instability index 65.6969387755
Isoelectric point 9.55377197266
Runs 19
Runs residual 0.0548350181194
Runs probability 0.0444686172241
Amino acid sequence MPSPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFFFKTGSVICFALVLA
VLRQQDKEARTKESRSSPAVEQQLLVSGPGKKPEDSRV
Secondary structure LLLLLEELLLLLLLLEEHHHLLLLEEEEEEELLHHHHHLEEEEEEEELLLLHHHHHHHHH
HHHHHLHHHLLLLLLLLHHHHEEEEELLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH
HLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTT
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