NONHSAT023080
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT023080 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5875 nt |
Genomic location |
chr11+:74910599..74917445 |
Exon number |
2 |
Exons |
74910599..74914472,74915445..74917445 |
Genome context |
|
Sequence |
000001 tgtctgcagc tgccagggct ggaggtgaga ggcccagagg gctccagctg tccaggccag ccagccactt caagggttga 000080
000081 tgggactaat ccctgcacac ctgtctccca tctgaggcCC TGTGTGGCTG GGGCACATGA GTCTAGAAGC TCTGGTCTAT 000160 000161 GGGAAAGCAA AGAGAAGCCC AGGCCTCTTG GCTTGGGCTG GCTTCTATCG GGTGCCTGTG AGCCCTGGCA GTCCAGATCA 000240 000241 CTTCGCAGAG TCCTTGGCTG GAGGTTTTCC TCGCTACCTA GGGAGTGAGT GCAGGCTGGG ATCAAACACT CCAGGGGGCA 000320 000321 AGCCCGGGGA CATGGCCAGC CTGGGGATGT TTTCTTACAG TTGGTGTGTA GAATGTGGGG GAATGATGCT CTCCTGGCTC 000400 000401 CCTCCCTCTT CTTCTCTACT TTCTCTCTGC TTCCCTCTCC CTGCCCACCA CCTCAGCCCA GGCTCAACTT GCACATAGAC 000480 000481 AGCCCTTGAG GTGCCTGCTC CTCAAGCCGT CTTTGCTCAG CCAACGGGTC ACGATCTCGG ACTCCCAGCC AGCTCTACCC 000560 000561 CAACTGGCTG TGGAACTTGG GCCTCTCACA AGCCTTCCCC GCTGCAAGCC CTTGGCCAGC TGCCTGCCCT TGGAGGCTCT 000640 000641 TGAAGTCTCT TCCTCCTCTT CCCACTCCAG GTTTTCTACA CCAACTGCAG CTGCGTGGTG GAGGGCAACC CCGTGCTGGC 000720 000721 AGGATCCTGC GACTCAACGT GCAGCCATCT GGTGGTGCCC TTCCTGCTCC TGGTCAGCCT GGGCTCGGCC CTGGCCTGTC 000800 000801 TCACCCACAC ACCCTCCTTC ATGCTCATCC TAAGGTGAAG GTGGGGGTGG GGCAGGGGCA GGTGGATACC AGGAGGTCCT 000880 000881 TAACCACAGG CAGAACAAGG AATTCCAAGG ACGGAGTTCA AGAAAGGAGG CCACTTGGGT GTCCTGGCCC CCACAATATG 000960 000961 GCCttaactg tgttcatccc atggcaacct actgaggcaa ggttttctcc ccatcttgca gataagaaaa ttgaggctca 001040 001041 gagaagttca ggagctggcc cccatcacat agcaagtgtt gggtggaata gtactggttc cctggcccac agcccaggct 001120 001121 cctacttgcc cagGGGAGAG GAGGACATAC CTAGGGCCCT GTCCTGGCCT CTGGAGGTGA GGGCATAATA CCTGCAATGG 001200 001201 ATGAGCTGCA GGAGGTGCAT CTAGGAAACC AAACTGTGTC AGTCTGGTGC ATGACTCTGA ATGCTGCTTC AAGGCTACAT 001280 001281 ACAAGTGCTT ATTAGGTGCC CGCTGTGGAC CCAACCCATG CTGAGCACTG CCTTTTGGGC CAAGATCTTT GTGGCCCTCG 001360 001361 TCCTAAGAAT GCCTGCTGGC CCTGACAAAT TGTCACCTGA GTTCAAAGTC AGGGTCTCCT GGGGTGAGGG CTGGGATAAG 001440 001441 AGGACTGAGT GAGAAAAAAA TAGtttttcc tttttttttt tttttttttt tgagatgcag ttttgctctg tctcccaggc 001520 001521 tggagtgcaa tggcgcaatc tcggctcact gcaacctcct cctcctgggt tcacgccatt ctcctgcctc agcctcccta 001600 001601 gtagctggga ttacaggcac ccgccaccac acccaactaa ttgtattttt agcagagacg gggtttcacc atgttggcca 001680 001681 ggacggtctc gaactcctga cctcagtgat ccacctgcct tggcctccca aagtgctggg attacaggca tgagccacca 001760 001761 cactcggcTG AGAAaaacag tttttctatt ctctcactca acaatcaaca cagaagactt ctgcaaccag aagtgtgggg 001840 001841 gtattttccc acacaccagg cactcaatta attctgcagt ggaccctagc cagtgtcccc caattctatt ctgacacaat 001920 001921 ctacctggag acagcatcag atcccacagg ctgagtgctc agtcccacaa gactttccct ccacttccca tgccaaccac 002000 002001 aagcctcagg ctgttttacc aatgattctg actgaccagc cgtatgctgg ggtttccaca gccccatctt tgagtttgct 002080 002081 ttatttgcta gagtggctca cagagctcag gaaaacatct acttaatgtt tatcggttta ttataaaaga tattacaaag 002160 002161 gatacagatg aagtgatgca tacggtgagg tatgggggag gagctttcat gccctccctg gctgcatcct gcagggacct 002240 002241 ccatgtgttc agctatccgg aagctcgcca aagcttcatt atgtaggcat gattgattaa atcactggat attggcagtc 002320 002321 acctcaacct tcagcccctc tccccttgct ggaggttggg gctgaaagtc ctaaccctct aatcctgcct tggtccctct 002400 002401 ggtgaccaag ccccagcctg aagctactag gggctgctca ccatcaatca actcattagc atacaaaaag acacttttca 002480 002481 ctttgaacat tccaagaatt ttaggagtgt atgccgggaa gaccaaatac acatctcaca atatcacaGG GACCTCAGAG 002560 002561 CAAGATAATT TCCATTTTCC TTCTCCTGGG ATTATTTTAT TCACTATCTA CTTTCTAGGA AATTAGAAGG GAAATGGAGC 002640 002641 CTCTTGCAAA TACCAGAAGA CATGTAGATC TAGAACACAA GCTGGCCTGG GAGAGAAAAT AGAGGAATCA GATGCCCAAC 002720 002721 AGGCAGCCTG ACTAAAagga gttgagaaca cagcctcagg gctgcgtgga tacaggccct gaccgctgtc agccatgaga 002800 002801 tcttggccaa gttattgaat ctgtctaagt gtcagtctcc ttatctgtaa aatggggcta atgtacacct cgctcatagg 002880 002881 agtgatgtgg ggttgcaggg cagagttact gagcccgtag taagcgctcc ataaatgCCA GCCACTGGTG TTGTCTGGCA 002960 002961 GGAGCTGGCG TTACAGTGGT TGGGGATGCT GGGGAAGTGT CTGACTGTCC CAGCTCCAGG TCTTGCCAAC TGTAGGAGTA 003040 003041 AGGGGAGAAT TTGATGGGAC CAGTGGGTGG AGGAAGAGGA GTGATGTCTG TGACCAGAAA CATACAGAGG TCAGCACAGG 003120 003121 ACCCTGATGG TCAGTGGGTG TGTTGTCTTG TATATGGGAC CAGGCTCTGC AGGTTGAAAA AGGATGGGGT ACGTCCCTGA 003200 003201 GCCCCCAGCC TAGATCATCA GATGGGAGAG AGGCTGGCTC TGGGTGGTGG GAGAGAAGGG CATAATAAGA ACCCTTCAAC 003280 003281 GTTGATGCAT GGCCCTTGGG GGCTGGAACC CCTCCAACCT CATGTTGCCC ATGTCTCTGC TTGTTAGAGG AGTGAAGAAA 003360 003361 GAAGACAAGA CTTTGGCTGT GGGCATCCAG TTCATGTTCC TGAGGATTTT GGGTAAAGAT CTTGCTTGGG ACCATTGGTG 003440 003441 GTGGTGATGG GGTCCAGATg cccactgtgt gccaggcctg gggcacaggc atgagcggaa ttcaatccct gatcttaggg 003520 003521 ctcacaagct catggggtga cagacCTGGC CCAGCTCTCC TAGAGCGGGG TATAGAGGCA GAGTCTAGAC AGCCCGTCAG 003600 003601 GAAGCCACCT CGGATGCAGG GGTGGGGCGG GCTTGAGGGC CAGACAGCCA AGAGGCCCCA GTAACCCAGA GCCCCTGAGG 003680 003681 GGTTGTACAT GCCAGGGAGG GGGCAGGGTA GGACGGTGGG CCTTCATTGT CCCCTGAGCA CCACCTCCCT CAGCCTGGAT 003760 003761 GCCCAGCCCC GTGATCCACG GCAGCGCCAT CGACACCACC TGTGTGCACT GGGCCCTGAG CTGTGGGCGT CGAGCTGTCT 003840 003841 GTCGCTACTA CAATAATGAC CTGCTCCGAA ACCGGTTCAT CGGCCTCCAG TTCTTCTTCA AAACAGGTTC TGTGATCTGC 003920 003921 TTCGCCTTAG TTTTGGCTGT CCTGAGGCAG CAGGACAAAG AGGCAAGGAC CAAAGAGAGC AGATCCAGCC CTGCCGTAGA 004000 004001 GCAGCAATTG CTAGTGTCGG GGCCAGGGAA GAAGCCAGAG GATTCCCGAG TGTGAGCTGT CTTGGGGCCC CACCTGGCCA 004080 004081 AGAGTAGCAG CCACAGCAGT ACCTCCTCTG AGTCCTTTGC CCAAgattgg gtgtcaagag ccctgtgttc cattctggct 004160 004161 cctccactaa attgctgtgt gacttcaggc aagacattga tcctctctca gcctttgctt gctagtctga accaaagagt 004240 004241 tgTTTGGGCA TTTGCTGTGT TGGCCATTTC TGGAGCAAGA GGGTCTTCTT CCTCCTTCCC CCAGCCAGCC AGCTGTCCTG 004320 004321 GGGCCAGGCT TTCCTGGGTG GAAAGAAGTA TACCTTTCCC TGGGGCCCTA GGATAGCAAA GTGAGCCATA GTGGGCCAGG 004400 004401 CTGCCCTCCA TGCTGGGCCC CAGCCCAGGT CTGCACTCGC CTGGATCACC TTCTTTGAGC CTTAGCCATC TCCTGTCAGG 004480 004481 TAGGAATGAA CTTGCCAGCC TTCAGGCTCG TTCAGCTATG ACCATCTGTG CGGTCAGGGT ACACTCAGCT CTCCTCCCCA 004560 004561 ACTCCAGCAG CCTTTAAGAA GTGTCCCTTT GGCGCCCCCT GGAGGCAGAG CACTGAGCTG GACCCTGGGT AGACTCCCAC 004640 004641 AGGGAGGACG GAGCTGGCCT CAGGAGTGGG ACACCCAGAC TTGGCAGGGC CTTCAAGAGG CCTGTGTGGG GGCCCCAGGA 004720 004721 ATCCTTAGCT GAAGCGGGGA GACTCACTCT CCATCTCAGG AAATTCTAGC CCTTGCCCTC AGGGAGCCAC GGTTGAGGGT 004800 004801 GAGGCCCAAC ACCTGCCTTA GGGCCCTGGG TGGGCAAGTC TGGGCCCTGG GGTAGGGAGG GAGACTCAGG CCCACACTTG 004880 004881 GGTATTTTCT AATTTCAGAC AAACACACAC TCAGCGCGCA CTCACTGATT CCTACACATT GCCAAGATTT CACACATGTG 004960 004961 ACCAGGGGCC ACCAAAGTCC CTGTGACCTT TGTGACTAGG ATCCTAATTT CTCTATTTTC TCCTGGGTGC CTGGGTCTGT 005040 005041 GTCACCTGGG GCAGTGTGGA TAATGTTTAG TTCTGTGACA CTGTTTTTTG GGGGTGGCAC CTGGTTCTCC GATGCCTGGG 005120 005121 CTGGTGTCAG GCCCAGGACT GTAGTGCTGG GAGCAGTAAA GCTCAGCTCT GTGTAATGAG TGATGCTATG GCTTGCTCGT 005200 005201 GTCTTATGAT CCAATCCTTT TCTACATCAG CCCTTGTTTT GTTTTATGGC TAGTCTTATC TGGCCTGGTT ATTTCCTTGC 005280 005281 GGGGAGGAGA GGGTTTGCTA ATCTGCTCCC AGCCCAACCT ATTACCACCC CACCTCGCTG GGACCTACTG CTCGGGAGGC 005360 005361 AGCAGACAGG GAGCCACCAG CAGTGGCTTC CTGGCCCTGT GCTGGGGGTG GGGGGAAGCT GGGGGCACAT GTGGCCCTTG 005440 005441 CCTTCTGAGC AGCTCCCAGT GCCAGGGCTT TGAGACTTTC CCACATGATA AAAGAAAAGG GAGGTACAGA AGTTCCAATT 005520 005521 CCCTTTTTAT TTTGCTGGTT GGTATCTGTA AATGTTTAAT AAATATCTGA GCATGTATCT ATCAACGCCA AGAATTTCAA 005600 005601 AGTCTCCTTC AACAATATGA GGCTTTTAGG ATGTTTATAT TCCTTCATCC CTCTTGTTTC CCAGGTTTTG CAGGGAAAAA 005680 005681 AAGTCTGGAA TTATAGATAC AGCTTATTAT TAAATTTGTT CTTGCATAAT GTCTCTTCTA TTACAAAAAT TCTTTCTTCA 005760 005761 TAAACTGCAT TAGAGGTTTG CAACAACCAc atcatttcca ttaacttaga tttaggtttt actggattca ttgctcacca 005840 005841 ttattgcttg tatattacat cttttccaat cttta |
Predicted Small Protein
Name | NONHSAT023080_smProtein_3758:4054 |
Length | 99 |
Molecular weight | 10967.5472 |
Aromaticity | 0.0816326530612 |
Instability index | 65.6969387755 |
Isoelectric point | 9.55377197266 |
Runs | 19 |
Runs residual | 0.0548350181194 |
Runs probability | 0.0444686172241 |
Amino acid sequence | MPSPVIHGSAIDTTCVHWALSCGRRAVCRYYNNDLLRNRFIGLQFFFKTGSVICFALVLA VLRQQDKEARTKESRSSPAVEQQLLVSGPGKKPEDSRV |
Secondary structure | LLLLLEELLLLLLLLEEHHHLLLLEEEEEEELLHHHHHLEEEEEEEELLLLHHHHHHHHH HHHHHLHHHLLLLLLLLHHHHEEEEELLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTT Tiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |